Rh5AG538200
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
92591618 .. 92592723
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG538200.1

Sequence Viewer

Length: 621 bp
ATGAAATCTATTTCTTCTGGGCTGGAAAGGGGACTTGCTATATACCAGATCGAGGAGGGTACATATGGACCTCTTATTTCAGCCATCCGTGCTACCCCTGTGGGTATCTTGCGCACCGGAATATGCTATGCGCCTATGCGTGGACACTTGACAGAGAAGACCGATGTGTTTGCCTATGGTGTTGTCATTCTAGAAATTGTCAGCGGTAGGCCAAATTCTGATCCAAGTTTGGAAGGCGATATGGTTTATCTTCTTAAATTGGAAGAAGCAAGACGAATTATCAACATAGGACTTTTTTGCACTCAGTCATCACCAATGCTACGACCACCTCTGTCTCGCGTGATCGGAATGCTTGCAGGAGATATTGAAGTGACTCCTGCTATTTCAAAGCCTGGTTACTTGACAGACTGGAGATTTGATGATGCAACTACTATCACCAGCCAAACGAAATTTGATGATGGGAGTACTGGCAACAGTCTAGGAACTGATATGTCAACTAGAGGAACTGACTTCAGCTTTTACAACTCGTCGGCAAGTACAAGCGTGATGGAGGATGCAGGGCAATTACCTTCAAATGCCACTCTTCCCATACTCGATAATACGAATGGTGGTGGTAGGTGA

Protein Analysis

206

Amino Acids

22.09

Weight (kDa)

4.8

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 113
AccII CGCG 1 cut(s) 339
AciI CCGC 1 cut(s) 204
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 2 cut(s) 214, 449
AcuI CTGAAG 1 cut(s) 496
AfaI GTAC 3 cut(s) 61, 466, 538
AfiI CCNNNNNNNGG 2 cut(s) 52, 140
AgsI TTSAA 3 cut(s) 368, 387, 573
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 1 cut(s) 516
AluI AGCT 1 cut(s) 516
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 215
AoxI GGCC 1 cut(s) 209
ApoI RAATTY 2 cut(s) 214, 449
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AspLEI GCGC 2 cut(s) 114, 133
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 303, 427
AvaII GGWCC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 164
BccI CCATC 3 cut(s) 92, 452, 541
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 3 cut(s) 191, 479, 498
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 2 cut(s) 412, 544
BpiI GAAGAC 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 430
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 140
Bse1I ACTGG 2 cut(s) 413, 472
BseBI CCWGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 84, 559
BseLI CCNNNNNNNGG 2 cut(s) 52, 140
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 2 cut(s) 413, 472
BseRI GAGGAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 52, 140
BsmAI GTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 45
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 1 cut(s) 211
Bsp143I GATC 3 cut(s) 48, 220, 342
BspACI CCGC 1 cut(s) 204
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 316
BspFNI CGCG 1 cut(s) 339
BspPI GGATC 1 cut(s) 215
BsrI ACTGG 2 cut(s) 413, 472
BssMI GATC 3 cut(s) 48, 220, 342
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 476
Bst6I CTCTTC 1 cut(s) 588
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 84, 559
BstFNI CGCG 1 cut(s) 339
BstHHI GCGC 2 cut(s) 114, 133
BstKTI GATC 3 cut(s) 51, 223, 345
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 3 cut(s) 48, 220, 342
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 391
BstUI CGCG 1 cut(s) 339
BstV2I GAAGAC 1 cut(s) 164
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 2 cut(s) 84, 559
Cac8I GCNNGC 1 cut(s) 354
CfoI GCGC 2 cut(s) 114, 133
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 60, 465, 537
CviJI RGCY 6 cut(s) 22, 83, 211, 391, 441, 516
CviKI_1 RGCY 6 cut(s) 22, 83, 211, 391, 441, 516
CviQI GTAC 3 cut(s) 60, 465, 537
DdeI CTNAG 1 cut(s) 303
DpnI GATC 3 cut(s) 50, 222, 344
DpnII GATC 3 cut(s) 48, 220, 342
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 391
FaqI GGGAC 1 cut(s) 45
FauNDI CATATG 1 cut(s) 64
FokI GGATG 2 cut(s) 71, 566
FspBI CTAG 3 cut(s) 191, 479, 498
FspI TGCGCA 1 cut(s) 113
GlaI GCGC 2 cut(s) 113, 132
GsuI CTGGAG 1 cut(s) 430
HaeIII GGCC 1 cut(s) 211
HapII CCGG 1 cut(s) 117
HhaI GCGC 2 cut(s) 114, 133
Hin6I GCGC 2 cut(s) 112, 131
HinP1I GCGC 2 cut(s) 112, 131
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HinfI GANTC 1 cut(s) 373
HpaII CCGG 1 cut(s) 117
HphI GGTGA 2 cut(s) 303, 427
Hpy166II GTNNAC 2 cut(s) 143, 495
Hpy188I TCNGA 2 cut(s) 220, 347
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 2 cut(s) 143, 495
Hpy99I CGWCG 1 cut(s) 532
HpyAV CCTTC 2 cut(s) 227, 579
HpyCH4III ACNGT 1 cut(s) 476
HpyCH4V TGCA 4 cut(s) 300, 356, 425, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 303
HspAI GCGC 2 cut(s) 112, 131
Kzo9I GATC 3 cut(s) 48, 220, 342
LweI GCATC 2 cut(s) 412, 544
MaeI CTAG 3 cut(s) 191, 479, 498
MaeIII GTNAC 2 cut(s) 370, 395
MalI GATC 3 cut(s) 50, 222, 344
MboI GATC 3 cut(s) 48, 220, 342
MboII GAAGA 5 cut(s) 6, 169, 242, 275, 575
MluCI AATT 6 cut(s) 195, 214, 257, 276, 449, 563
MlyI GAGTC 1 cut(s) 367
MnlI CCTC 6 cut(s) 46, 49, 81, 339, 494, 544
MseI TTAA 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 393
Mva1269I GAATGC 1 cut(s) 354
MvaI CCWGG 1 cut(s) 393
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeI CATATG 1 cut(s) 64
NdeII GATC 3 cut(s) 48, 220, 342
NmuCI GTSAC 1 cut(s) 370
NsbI TGCGCA 1 cut(s) 113
PctI GAATGC 1 cut(s) 354
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspPI GGNCC 1 cut(s) 68
RsaI GTAC 3 cut(s) 61, 466, 538
RsaNI GTAC 3 cut(s) 60, 465, 537
SaqAI TTAA 1 cut(s) 255
Sau3AI GATC 3 cut(s) 48, 220, 342
Sau96I GGNCC 1 cut(s) 68
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 1 cut(s) 367
ScrFI CCNGG 1 cut(s) 393
SetI ASST 5 cut(s) 73, 331, 518, 571, 620
SfaNI GCATC 2 cut(s) 412, 544
SinI GGWCC 1 cut(s) 68
Sse9I AATT 6 cut(s) 195, 214, 257, 276, 449, 563
SsiI CCGC 1 cut(s) 204
SspMI CTAG 3 cut(s) 191, 479, 498
StyD4I CCNGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 476
TaqI TCGA 2 cut(s) 51, 594
TaqII GACCGA 1 cut(s) 176
TasI AATT 6 cut(s) 195, 214, 257, 276, 449, 563
TatI WGTACW 2 cut(s) 464, 536
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 2 cut(s) 214, 449
XbaI TCTAGA 1 cut(s) 190
XspI CTAG 3 cut(s) 191, 479, 498
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.