pycom05g23840

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
25561065 .. 25561861
797 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23840.2

Sequence Viewer

Length: 594 bp
ATGAGCAAAAATTGCACTTTATCGTATGAAATGGGTATTAATCAGTTGCCTTATGATTTTCCCAGTTACATGGACACTCACCAAGATGCAAGCCCTGTAAGAACGGCTCTTAAATCGTATTTTAGATTTGTTCGTTTATCCATCAACTTTTTGAATTTTAGGTGGGCATCGGACAATCCTTTCTCAGGAAAGATACCTGATTTCATAGGGAATTGGACACAACTCACTTCTTTCAGACCTGAGATGGATAATTTGTTCACAAGCTTCTTATATGTTTCTGTAGAAACAATAGTCTCTCCGGATCTCTTCCGAGCCAAAAGAGCGATGGACTTCAGACTATGTAAGTCCTCGTGTTTGTGTATAATCGTAAGCATTCTAATCCTATCTTACACAATTTGTTATTTGCAGAGATTTGTCTTACAATTTTTTATCAGGAAGCTTTCCCAGTGGGTGACCACAGTATCGCAGCAACTGTACGTTTCCTTTTATCTTTCATGTTCATTTTATAGTTTAAATCACCAGAACATGTTCGGACAAAAAATTATCGTTGAGATTCGTTTTCACAGTGCTACTTGCCTGCTTACTAAGTTTTGA

Protein Analysis

198

Amino Acids

23.16

Weight (kDa)

9.11

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 298
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 316
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 1 cut(s) 154
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 2 cut(s) 264, 439
AluI AGCT 2 cut(s) 264, 439
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 1 cut(s) 309
AlwNI CAGNNNCTG 1 cut(s) 472
Aor13HI TCCGGA 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 1 cut(s) 154
AseI ATTAAT 1 cut(s) 39
Asp700I GAANNNNTTC 1 cut(s) 527
AsuHPI GGTGA 3 cut(s) 71, 463, 509
BaeI ACNNNNGTAYC 2 cut(s) 444, 477
BauI CACGAG 1 cut(s) 349
BbvI GCAGC 1 cut(s) 478
BccI CCATC 3 cut(s) 149, 238, 319
BceAI ACGGC 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 298
BfmI CTRYAG 1 cut(s) 279
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
BmrI ACTGGG 2 cut(s) 57, 439
BmsI GCATC 2 cut(s) 76, 176
BmuI ACTGGG 2 cut(s) 57, 439
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 2 cut(s) 63, 445
BseAI TCCGGA 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMII CTCAG 2 cut(s) 198, 231
BseNI ACTGG 2 cut(s) 63, 445
BseXI GCAGC 1 cut(s) 478
BsiSI CCGG 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 298
BsmI GAATGC 1 cut(s) 372
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 1 cut(s) 301
BspCNI CTCAG 2 cut(s) 197, 232
BspEI TCCGGA 1 cut(s) 298
BspPI GGATC 1 cut(s) 309
BsrI ACTGG 2 cut(s) 63, 445
BssMI GATC 1 cut(s) 301
BssSI CACGAG 1 cut(s) 349
Bst2BI CACGAG 1 cut(s) 349
Bst4CI ACNGT 3 cut(s) 460, 474, 566
Bst6I CTCTTC 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 91, 578
BstDEI CTNAG 3 cut(s) 184, 240, 585
BstEII GGTNACC 1 cut(s) 451
BstENI CCTNNNNNAGG 1 cut(s) 183
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 2 cut(s) 12, 320
BstNSI RCATGY 1 cut(s) 529
BstPI GGTNACC 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 478
BstX2I RGATCY 1 cut(s) 301
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 1 cut(s) 301
BtgZI GCGATG 1 cut(s) 338
BtsIMutI CAGTG 2 cut(s) 452, 571
Cac8I GCNNGC 2 cut(s) 91, 578
CaiI CAGNNNCTG 1 cut(s) 472
Csp6I GTAC 1 cut(s) 475
CviAII CATG 3 cut(s) 70, 495, 526
CviJI RGCY 5 cut(s) 93, 107, 264, 314, 439
CviKI_1 RGCY 5 cut(s) 93, 107, 264, 314, 439
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 3 cut(s) 184, 240, 585
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
DraI TTTAAA 1 cut(s) 513
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 316
Eco91I GGTNACC 1 cut(s) 451
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoO65I GGTNACC 1 cut(s) 451
FaeI CATG 3 cut(s) 73, 498, 529
FatI CATG 3 cut(s) 69, 494, 525
Fnu4HI GCNGC 1 cut(s) 467
Fsp4HI GCNGC 1 cut(s) 467
GluI GCNGC 1 cut(s) 467
HapII CCGG 1 cut(s) 299
Hin1II CATG 3 cut(s) 73, 498, 529
HindIII AAGCTT 2 cut(s) 262, 437
HinfI GANTC 1 cut(s) 553
HpaII CCGG 1 cut(s) 299
HphI GGTGA 3 cut(s) 71, 463, 509
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 5 cut(s) 172, 236, 311, 335, 533
Hpy188III TCNNGA 3 cut(s) 186, 299, 433
Hpy8I GTNNAC 1 cut(s) 258
HpyCH4III ACNGT 3 cut(s) 460, 474, 566
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 3 cut(s) 15, 89, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 320
HpyF3I CTNAG 3 cut(s) 184, 240, 585
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 3 cut(s) 73, 498, 529
Kpn2I TCCGGA 1 cut(s) 298
Kzo9I GATC 1 cut(s) 301
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 2 cut(s) 76, 176
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 2 cut(s) 65, 451
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 1 cut(s) 298
MflI RGATCY 1 cut(s) 301
MluCI AATT 7 cut(s) 10, 154, 211, 250, 393, 422, 540
MnlI CCTC 1 cut(s) 358
MroI TCCGGA 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 527
MseI TTAA 3 cut(s) 39, 111, 512
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 12, 320
NdeII GATC 1 cut(s) 301
NlaIII CATG 3 cut(s) 73, 498, 529
NmuCI GTSAC 1 cut(s) 451
NspI RCATGY 1 cut(s) 529
PciI ACATGT 1 cut(s) 525
PctI GAATGC 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 1 cut(s) 553
PkrI GCNGC 1 cut(s) 468
PscI ACATGT 1 cut(s) 525
PshBI ATTAAT 1 cut(s) 39
PspEI GGTNACC 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 3 cut(s) 39, 111, 512
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 1 cut(s) 301
SetI ASST 6 cut(s) 164, 199, 241, 266, 441, 480
SfaNI GCATC 2 cut(s) 76, 176
SfcI CTRYAG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 7 cut(s) 10, 154, 211, 250, 393, 422, 540
TaaI ACNGT 3 cut(s) 460, 474, 566
TaiI ACGT 1 cut(s) 480
TasI AATT 7 cut(s) 10, 154, 211, 250, 393, 422, 540
TfiI GAWTC 1 cut(s) 553
Tru1I TTAA 3 cut(s) 39, 111, 512
Tru9I TTAA 3 cut(s) 39, 111, 512
TscAI CASTG 2 cut(s) 452, 571
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 4 cut(s) 42, 193, 483, 489
TspRI CASTG 2 cut(s) 452, 571
VspI ATTAAT 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 183
XapI RAATTY 1 cut(s) 154
XceI RCATGY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.