Rorug05G0046500

Di-glucose binding within endoplasmic reticulum

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
4064513 .. 4067062
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0046500.1

Sequence Viewer

Length: 888 bp
ATGGATTTGAGTACAATGGATCGCGGGCAGTTGACCCTGCTAGGATCGGCTGGTTGTGTGATGCTCACAATGCATTTCACAGTCCAGTTATTGTCCCAACATCTCTTTTACTGGAAGAACCCAAAGGAACAGAAAGCTATAATAATTATCATTCTTATGGCTCCACTATATGCAATTGACTCATTTGTGGGTTTATTGGATATTCAAGGAAGCAAAGCAGTTTTCATGCTCTTAGACTCTATTAAGGAGTGTTACGAGGCTCTGGTGATTGCTAAGTTCTTGGCTCTAATGTATAGTTACCTGAACATATCTATAAGCAAAAATATTGTGCCAGACGAAATCAAAGGAAGAGAAATCCACCACTCTTTTCCAATGACTCTTTTTCAGCCTCACACTGTTCGGCTAAACCACCAAACCCTGAAGCTACTCAAATATTGGACTTGGCAGTTCGTCGTCATCCGCCCAGTTTTTTCTGTTTTGATGATAACACTACAAGTACTTGGAGTTTATCCCAGTTGGTTGAGCTGGACCTTCACTATCATTCTTAATGTTTCCGTTTCATTGGCATTGTACTCTCTGGTCGTGTTTTACCATGTGTTTGCAAAGGAACTGGAACCACATAAACCCCTTGCAAAGTTCATGTGCATCAAGGGAATTGTCTTCTTCTGCTTTTGGCAGGGAGTGGTCCTTGAGATATTAGCTGCTATCGGCATCATTCGATCTCATCATTTCTGGTTGGATGTGGAGCACATTGAAGAAGCTATTCAGAATGTCTTGGTATGTCTTGAGATGGTCGTCTTCTCTGTTCTCCAGCAGTATGCCTACCATGTTGCACCATACAGTGGAGACGTCGAAACAAAGATGAGATTAAACAAGAAGAAGGAATGA

Protein Analysis

295

Amino Acids

34.05

Weight (kDa)

8.19

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 16 - 280 1.9e-75 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 852
AccB7I CCANNNNNTGG 1 cut(s) 842
AccII CGCG 1 cut(s) 24
AciI CCGC 2 cut(s) 24, 460
AclWI GGATC 2 cut(s) 27, 52
AcuI CTGAAG 1 cut(s) 440
AcyI GRCGYC 1 cut(s) 849
AfaI GTAC 3 cut(s) 13, 498, 572
AfiI CCNNNNNNNGG 1 cut(s) 842
AgsI TTSAA 2 cut(s) 206, 755
AluBI AGCT 5 cut(s) 137, 424, 525, 701, 761
AluI AGCT 5 cut(s) 137, 424, 525, 701, 761
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 2 cut(s) 27, 52
ApeKI GCWGC 1 cut(s) 701
Asp700I GAANNNNTTC 1 cut(s) 762
AspS9I GGNCC 2 cut(s) 528, 685
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 2 cut(s) 528, 685
BbsI GAAGAC 2 cut(s) 652, 790
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 1 cut(s) 688
BccI CCATC 1 cut(s) 784
BcoDI GTCTC 1 cut(s) 840
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 702
BlsI GCNGC 1 cut(s) 703
BmcAI AGTACT 1 cut(s) 498
Bme18I GGWCC 2 cut(s) 528, 685
BmgT120I GGNCC 2 cut(s) 528, 685
BmiI GGNNCC 2 cut(s) 162, 615
BmrI ACTGGG 2 cut(s) 458, 507
BmsI GCATC 3 cut(s) 51, 654, 720
BmuI ACTGGG 2 cut(s) 458, 507
BpiI GAAGAC 2 cut(s) 652, 790
BpmI CTGGAG 1 cut(s) 794
BpuEI CTTGAG 2 cut(s) 710, 806
BsaHI GRCGYC 1 cut(s) 849
Bsc4I CCNNNNNNNGG 1 cut(s) 842
Bse1I ACTGG 5 cut(s) 85, 116, 464, 513, 615
BseGI GGATG 2 cut(s) 456, 745
BseLI CCNNNNNNNGG 1 cut(s) 842
BseNI ACTGG 5 cut(s) 85, 116, 464, 513, 615
BseXI GCAGC 1 cut(s) 688
Bsh1236I CGCG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 750
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 842
BsmAI GTCTC 1 cut(s) 840
BsmBI CGTCTC 1 cut(s) 840
BsmFI GGGAC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 750
Bsp143I GATC 3 cut(s) 19, 44, 719
BspACI CCGC 2 cut(s) 24, 460
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 162, 615
BspPI GGATC 2 cut(s) 27, 52
BsrI ACTGG 5 cut(s) 85, 116, 464, 513, 615
BssMI GATC 3 cut(s) 19, 44, 719
BssNI GRCGYC 1 cut(s) 849
Bst4CI ACNGT 3 cut(s) 82, 397, 842
Bst6I CTCTTC 1 cut(s) 343
BstACI GRCGYC 1 cut(s) 849
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 232, 273
BstF5I GGATG 2 cut(s) 456, 745
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 3 cut(s) 22, 47, 722
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 3 cut(s) 19, 44, 719
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 688
BstV2I GAAGAC 2 cut(s) 652, 790
BtsCI GGATG 2 cut(s) 456, 745
BtsIMutI CAGTG 2 cut(s) 393, 847
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 528, 685
Csp6I GTAC 3 cut(s) 12, 497, 571
CviAII CATG 4 cut(s) 226, 593, 640, 827
CviQI GTAC 3 cut(s) 12, 497, 571
DdeI CTNAG 2 cut(s) 232, 273
DpnI GATC 3 cut(s) 21, 46, 721
DpnII GATC 3 cut(s) 19, 44, 719
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
EciI GGCGGA 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 528, 685
Eco57I CTGAAG 1 cut(s) 440
EcoT22I ATGCAT 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 4 cut(s) 229, 596, 643, 830
FaqI GGGAC 1 cut(s) 79
FatI CATG 4 cut(s) 225, 592, 639, 826
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 1 cut(s) 702
FokI GGATG 2 cut(s) 443, 752
Fsp4HI GCNGC 1 cut(s) 702
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 702
GsuI CTGGAG 1 cut(s) 794
Hin1I GRCGYC 1 cut(s) 849
Hin1II CATG 4 cut(s) 229, 596, 643, 830
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 3 cut(s) 179, 236, 376
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 768
Hpy188III TCNNGA 1 cut(s) 785
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 2 cut(s) 455, 854
HpyAV CCTTC 2 cut(s) 541, 874
HpyCH4III ACNGT 3 cut(s) 82, 397, 842
HpyCH4IV ACGT 1 cut(s) 849
HpyCH4V TGCA 6 cut(s) 73, 173, 602, 632, 645, 833
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 2 cut(s) 232, 273
HpySE526I ACGT 1 cut(s) 849
Hsp92I GRCGYC 1 cut(s) 849
Hsp92II CATG 4 cut(s) 229, 596, 643, 830
Kzo9I GATC 3 cut(s) 19, 44, 719
LmnI GCTCC 2 cut(s) 166, 745
Lsp1109I GCAGC 1 cut(s) 688
LweI GCATC 3 cut(s) 51, 654, 720
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 849
MaeIII GTNAC 2 cut(s) 251, 296
MalI GATC 3 cut(s) 21, 46, 721
MboI GATC 3 cut(s) 19, 44, 719
MboII GAAGA 6 cut(s) 127, 360, 652, 655, 767, 790
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 750
MluCI AATT 3 cut(s) 144, 174, 654
MlyI GAGTC 3 cut(s) 173, 230, 370
MmeI TCCRAC 1 cut(s) 717
MnlI CCTC 2 cut(s) 250, 399
Mph1103I ATGCAT 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 762
MseI TTAA 3 cut(s) 243, 546, 869
MslI CAYNNNNRTG 1 cut(s) 155
MunI CAATTG 1 cut(s) 174
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 3 cut(s) 19, 44, 719
NlaIII CATG 4 cut(s) 229, 596, 643, 830
NlaIV GGNNCC 2 cut(s) 162, 615
NsiI ATGCAT 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 762
PflMI CCANNNNNTGG 1 cut(s) 842
PkrI GCNGC 1 cut(s) 703
PleI GAGTC 3 cut(s) 173, 230, 370
PpsI GAGTC 3 cut(s) 173, 230, 370
PspN4I GGNNCC 2 cut(s) 162, 615
PspPI GGNCC 2 cut(s) 528, 685
RsaI GTAC 3 cut(s) 13, 498, 572
RsaNI GTAC 3 cut(s) 12, 497, 571
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 3 cut(s) 243, 546, 869
SatI GCNGC 1 cut(s) 702
Sau3AI GATC 3 cut(s) 19, 44, 719
Sau96I GGNCC 2 cut(s) 528, 685
ScaI AGTACT 1 cut(s) 498
SchI GAGTC 3 cut(s) 173, 230, 370
SduI GDGCHC 1 cut(s) 750
SetI ASST 8 cut(s) 139, 303, 426, 527, 533, 703, 763, 852
SfaNI GCATC 3 cut(s) 51, 654, 720
SinI GGWCC 2 cut(s) 528, 685
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 689, 785
SmoI CTYRAG 2 cut(s) 689, 785
Sse9I AATT 3 cut(s) 144, 174, 654
SsiI CCGC 2 cut(s) 24, 460
SspI AATATT 2 cut(s) 325, 434
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 3 cut(s) 82, 397, 842
TaiI ACGT 1 cut(s) 852
TaqI TCGA 2 cut(s) 718, 852
TasI AATT 3 cut(s) 144, 174, 654
TatI WGTACW 3 cut(s) 11, 496, 570
Tru1I TTAA 3 cut(s) 243, 546, 869
Tru9I TTAA 3 cut(s) 243, 546, 869
TscAI CASTG 2 cut(s) 400, 847
TseI GCWGC 1 cut(s) 701
TspDTI ATGAA 3 cut(s) 214, 549, 628
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 2 cut(s) 400, 847
Van91I CCANNNNNTGG 1 cut(s) 842
VpaK11BI GGWCC 2 cut(s) 528, 685
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 1 cut(s) 41
ZraI GACGTC 1 cut(s) 850
ZrmI AGTACT 1 cut(s) 498
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.