Rorug05G0089500
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
7703021 .. 7708970
5950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0089500.1

Sequence Viewer

Length: 2856 bp
ATGTTGGTTTGTGATGTTGTTGTTTGTTTCATTATTGGATTGAGTTGCTTCAAACTGCCGGGACTTGCCGAGTCTAAGGTGCCCCAAGATGAGGTTGATGCTCTCCAACAAATTGTAAAAACCATGGGTGCAAAATATTGGAGTTTTGATGGTGATGCTTGCCGGATTGAAATGGTTGGTCTAACAGAGAAGCCACCAAAGGACTCTGAGAGCAGAACTGATTGTCAATGCAACCATGACAACACTGTTTGTCATGTCACAAAACTAATGTTCAAGGGTTATAGTTTACCTGGTTTGCTCCCACCTCAACTAGTCAATCTTCCTTACCTCCAAGAAATTGACTTTGCTTTCAACTATCTCAATGGTACAATACCAAAGGAATGGGCTTCAATGAAATTAACTTATATCTCTGTTCTTGCTAATCGGTTATCCGGCGAAATTCCAAAGGAGTTGGGAAATATAACTACCCTCACATACCTGTCCTTTGAAGCGAACCGGTTTTCTGGTGTTCTTCCTCCTGAGCTAGGGAATTTGATCAATCTGCGAACTTTGATGCTTTCCTCCAATCAGCTGACTGGAAACTTGCCAGAGGCATATGCTGGTTTAACAAGTTTGGGAGATTTCCGACTAAATGACAACAACTTTACTGGAGCCATCCCAGGTTTGGTTCAGAATTGGAAATTACTCCGGAGATTGGAAATGCATTCAAGTGGACTCATCGGCCCCATTCCATCAAATATTTCTCTTCTGTATAATCTAAAACTGTTGAGGATTAGTGATATAAATGGGCAAAGCCAGGAATTTCCTTTTCTGAGAAATATGACAGGCATAGTAAAATTGGTTTTGAGAAACTGTAATATTTTTGGAGAGATCCCCACATATATATGGTCTATGACAAATCTGGAAATGTTGGATGTCAGTTTTAACAAGTTAGTGGGTGAACTTTCATCCACAAAAGGTTCTGCGCATCTGAAGTTTGTTTTTTTGACTGGAAACTTGCTAAATGGAGATGTGCCGGATTCATTCTTGCGAGATGGCATCAGCATTGATTTGTCATATAATAACTTGACATTGCAAAGCCCTGAGCAACCTGATTGCCAAGAACACAGGAATCTAAATCTAAACTTGTTTCGAAGCTCTTCAAAGGAGAATTATTTAAGGGATGTTCTTCCATGCCTAGAAAATTTTCACTGCCCGCGATATTCAAATTGTATGCATGTCAATTGTGGTGGAAATGACATAACTCTCAAGGATGAGAATAACACAAATGTCATATATGAAGGAGATGGAAGAGTTGAAGGTGGTGCTGCAAAATATTTTAGGAATGAAGAAAGTATGTGGGGATTTAGTAGCACTGGGGACTTCATGGACGACTATGATTTGAAAAACACACGCTACTTAATATCTCTGGCATCTTCAAATCTCTCTGAACTATATACAACAGCTCGCACTTCTCCAATTTCACTTACTTATTTCTACTATTGTTTAGAGAATGGGGTTTACACTGTTACTCTCCACTTTGCGGAGATCAAGTTCACAAATGAGGGAACACACAGTCTTGGGAGGAGGTTTTTTGATATCTATGTTCAGGAAAGATTGGTTTGGAAGGATTTCAATATTGAAGATGAAGCAGGAATGGCTCAGAAAGGGATAATAAAACAAGTACTGAATGTCAATGTGACAAGTAATGTCTTAGAAATTCGATTCTATTGGGCTGGAAAAGGGACAACAAGGATTCCTGAAAGAGGGGATTATGGTCCCCTTATATCAGCTATTTCTGTGGTTTCCAATTTCAAACCTTGTACAGGCAGTAGAACCGCTGGTACTATTCCTATCATTGCTGGTGTCGGTATTGGTGCATTATTCCTCTCACTCATCACAATGGCAATCCTTTGGTGGAAAGGATATGTTCAAGGAAAATGGGGCAGACGAAGAGGAGGAAATATGCAGATGGGGAATTTTAGTCTGAAACAAATAAGAGCAGCCAGTGATGACTTTGATTCTGCAAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTATTCAAGGGTCAGTTACCAGATGGTTCTTTGATAGCCATTAAGCAGCTCTCATCAAATTCAAGGCAAGGAAATCGTGAATTTTTAAATGAGATTGGCATGATATCTTGTGTGCAACATCCAAATCTAGTGAAATTGCATGGATGTTGTATAGAAGGGGATCAGCTATTGCTGGTGTACGAGTACATGGAGAACAATAGTCTTGCACGCGCCTTATTTGATGCAGATTTGAACCCAAAAATATCTGACTTCGGATTGGCTAAGCTTGATGAAGAGGAGAATACACATATTAGCACCCGAGTTGCTGGAACCATAGGATATATGGCACCAGAATACGCTCTATGGGGTCACTTGACTTACAAAGCAGATGTGTACAGTTTTGGAGTTGTTGCTTTGGAACTCATTAGCGGGAAGAGCAACACAAGTCATGTGCCAAATGACAGTTATGCCTGTCTTCTAGATAGGGCTTGCCATTTGCAACAAACTGGAAACTTGAAGCAGCTGGTTGATGAGAGGTTGGGGGATGAAGTCAATGACAAAGAAGCAGAAGTTATGATTAAAGTTGGTATGCTATGTACAAATGCATCTCCGACGGTTAGGCCTACGATGTCTGAGGTGTTGAGCATGCTTGAAGGACGAACAGCAGTCCCGGATGTGACCCCAGAAGCAAGCACCTATGCCAAAGATTTGAGGTTCAAAGCCATGAGAGACCTCCAAAGGCTGTGTTCAAGTGAAAGCCAATTCCAGAATTTGACAACTACTAGTACATTGTGCTCTTCCTCTACTTCAGGCTGTGATTTGACAATTGGATCAGCTTAG

Protein Analysis

951

Amino Acids

105.6

Weight (kDa)

5.47

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 149 - 259 1.2e-06 Leucine-rich repeat region
Malectin PF11721 404 - 592 2.9e-40 Malectin domain
Pkinase PF00069 668 - 751 7.8e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 669 - 751 2.6e-15 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 751 - 887 8.7e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 752 - 887 1.6e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 966
AccB1I GGYRCC 2 cut(s) 79, 2362
AccII CGCG 2 cut(s) 1198, 2247
AccIII TCCGGA 1 cut(s) 687
AciI CCGC 4 cut(s) 1196, 1523, 1818, 2445
AclWI GGATC 3 cut(s) 865, 2205, 2854
AcsI RAATTY 9 cut(s) 438, 529, 800, 1183, 1698, 1957, 2095, 2117, 2785
AcuI CTGAAG 2 cut(s) 992, 2808
AfaI GTAC 9 cut(s) 367, 1665, 1804, 1825, 2216, 2222, 2411, 2614, 2803
AfiI CCNNNNNNNGG 7 cut(s) 91, 524, 664, 694, 1522, 1745, 1805
AgeI ACCGGT 1 cut(s) 495
AhlI ACTAGT 2 cut(s) 310, 2798
AjnI CCWGG 3 cut(s) 289, 658, 795
AjuI GAANNNNNNNTTGG 2 cut(s) 2013, 2045
AloI GAACNNNNNNTCC 2 cut(s) 1517, 1549
Alw21I GWGCWC 1 cut(s) 2813
Alw26I GTCTC 1 cut(s) 2739
AlwI GGATC 3 cut(s) 865, 2205, 2854
Ama87I CYCGRG 1 cut(s) 2334
Aor13HI TCCGGA 1 cut(s) 687
AoxI GGCC 2 cut(s) 721, 2636
ApeKI GCWGC 4 cut(s) 1307, 1982, 2083, 2536
ApoI RAATTY 9 cut(s) 438, 529, 800, 1183, 1698, 1957, 2095, 2117, 2785
AsiGI ACCGGT 1 cut(s) 495
Asp700I GAANNNNTTC 3 cut(s) 1138, 1185, 1610
AspLEI GCGC 2 cut(s) 967, 2249
AspS9I GGNCC 3 cut(s) 722, 1757, 2033
AsuC2I CCSGG 2 cut(s) 60, 2687
AsuHPI GGTGA 2 cut(s) 164, 950
AsuII TTCGAA 1 cut(s) 1132
AvaI CYCGRG 1 cut(s) 2334
AvaII GGWCC 2 cut(s) 1757, 2033
BaeGI GKGCMC 1 cut(s) 84
BanI GGYRCC 2 cut(s) 79, 2362
BbsI GAAGAC 1 cut(s) 2483
Bbv12I GWGCWC 1 cut(s) 2813
BbvI GCAGC 4 cut(s) 1294, 1994, 2095, 2548
BccI CCATC 7 cut(s) 143, 662, 739, 1028, 1280, 1945, 2054
BcgI CGANNNNNNTGC 2 cut(s) 2093, 2127
BciT130I CCWGG 3 cut(s) 291, 660, 797
BclI TGATCA 1 cut(s) 534
BcnI CCSGG 2 cut(s) 60, 2687
BcoDI GTCTC 1 cut(s) 2739
BcuI ACTAGT 2 cut(s) 310, 2798
BfaI CTAG 6 cut(s) 311, 524, 1178, 2165, 2495, 2799
BisI GCNGC 4 cut(s) 1308, 1983, 2084, 2537
BlpI GCTNAGC 1 cut(s) 2298
BlsI GCNGC 4 cut(s) 1309, 1984, 2085, 2538
BmcAI AGTACT 1 cut(s) 1665
Bme1390I CCNGG 5 cut(s) 60, 291, 660, 797, 2687
Bme18I GGWCC 2 cut(s) 1757, 2033
BmeT110I CYCGRG 1 cut(s) 2334
BmgT120I GGNCC 3 cut(s) 722, 1757, 2033
BmiI GGNNCC 6 cut(s) 81, 652, 724, 1759, 2347, 2364
BmrFI CCNGG 5 cut(s) 60, 291, 660, 797, 2687
BmrI ACTGGG 1 cut(s) 1365
BmsI GCATC 8 cut(s) 88, 145, 543, 976, 1047, 1421, 2248, 2630
BmuI ACTGGG 1 cut(s) 1365
BpiI GAAGAC 1 cut(s) 2483
BpmI CTGGAG 1 cut(s) 669
Bpu10I CCTNAGC 2 cut(s) 519, 1083
Bpu1102I GCTNAGC 1 cut(s) 2298
Bpu14I TTCGAA 1 cut(s) 1132
BpuEI CTTGAG 1 cut(s) 1232
BpuMI CCSGG 2 cut(s) 60, 2687
BsaI GGTCTC 1 cut(s) 2739
BsaJI CCNNGG 2 cut(s) 123, 658
BsaWI WCCGGW 2 cut(s) 495, 687
BsaXI ACNNNNNCTCC 2 cut(s) 1517, 1547
Bsc4I CCNNNNNNNGG 7 cut(s) 91, 524, 664, 694, 1522, 1745, 1805
Bse118I RCCGGY 1 cut(s) 495
Bse1I ACTGG 6 cut(s) 580, 652, 994, 1360, 1986, 2527
Bse3DI GCAATG 2 cut(s) 1070, 1836
BseAI TCCGGA 1 cut(s) 687
BseBI CCWGG 3 cut(s) 291, 660, 797
BseDI CCNNGG 2 cut(s) 123, 658
BseGI GGATG 9 cut(s) 654, 919, 947, 1168, 1258, 2155, 2186, 2566, 2695
BseLI CCNNNNNNNGG 7 cut(s) 91, 524, 664, 694, 1522, 1745, 1805
BseMI GCAATG 2 cut(s) 1070, 1836
BseMII CTCAG 6 cut(s) 198, 510, 803, 1074, 1655, 2640
BseNI ACTGG 6 cut(s) 580, 652, 994, 1360, 1986, 2527
BseRI GAGGAG 3 cut(s) 1579, 1950, 2327
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 4 cut(s) 1294, 1994, 2095, 2548
Bsh1236I CGCG 2 cut(s) 1198, 2247
BshFI GGCC 2 cut(s) 723, 2638
BshNI GGYRCC 2 cut(s) 79, 2362
BshTI ACCGGT 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 2813
BsiHKCI CYCGRG 1 cut(s) 2334
BsiSI CCGG 7 cut(s) 59, 163, 432, 496, 688, 1016, 2687
BslFI GGGAC 5 cut(s) 75, 1373, 1738, 1743, 2669
BslI CCNNNNNNNGG 7 cut(s) 91, 524, 664, 694, 1522, 1745, 1805
BsmAI GTCTC 1 cut(s) 2739
BsmFI GGGAC 5 cut(s) 75, 1373, 1738, 1743, 2669
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 2 cut(s) 723, 2638
Bso31I GGTCTC 1 cut(s) 2739
BsoBI CYCGRG 1 cut(s) 2334
Bsp119I TTCGAA 1 cut(s) 1132
Bsp1286I GDGCHC 2 cut(s) 84, 2813
Bsp13I TCCGGA 1 cut(s) 687
Bsp1407I TGTACA 3 cut(s) 1802, 2409, 2612
Bsp143I GATC 5 cut(s) 534, 870, 1527, 2197, 2846
Bsp1720I GCTNAGC 1 cut(s) 2298
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 4 cut(s) 1196, 1523, 1818, 2445
BspANI GGCC 2 cut(s) 723, 2638
BspCNI CTCAG 6 cut(s) 199, 511, 804, 1075, 1654, 2641
BspEI TCCGGA 1 cut(s) 687
BspFNI CGCG 2 cut(s) 1198, 2247
BspLI GGNNCC 6 cut(s) 81, 652, 724, 1759, 2347, 2364
BspPI GGATC 3 cut(s) 865, 2205, 2854
BspQI GCTCTTC 3 cut(s) 1144, 2444, 2818
BspT104I TTCGAA 1 cut(s) 1132
BspT107I GGYRCC 2 cut(s) 79, 2362
BspTNI GGTCTC 1 cut(s) 2739
BsrDI GCAATG 2 cut(s) 1070, 1836
BsrFI RCCGGY 1 cut(s) 495
BsrGI TGTACA 3 cut(s) 1802, 2409, 2612
BsrI ACTGG 6 cut(s) 580, 652, 994, 1360, 1986, 2527
BssAI RCCGGY 1 cut(s) 495
BssECI CCNNGG 2 cut(s) 123, 658
BssMI GATC 5 cut(s) 534, 870, 1527, 2197, 2846
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 3 cut(s) 291, 660, 797
Bst4CI ACNGT 8 cut(s) 247, 765, 854, 1507, 1556, 2414, 2480, 2632
Bst6I CTCTTC 7 cut(s) 750, 1144, 1285, 1927, 2304, 2444, 2818
BstAUI TGTACA 3 cut(s) 1802, 2409, 2612
BstBI TTCGAA 1 cut(s) 1132
BstC8I GCNNGC 7 cut(s) 160, 1196, 1447, 2245, 2506, 2663, 2707
BstDSI CCRYGG 1 cut(s) 123
BstENI CCTNNNNNAGG 3 cut(s) 522, 1743, 1803
BstF5I GGATG 9 cut(s) 654, 919, 947, 1168, 1258, 2155, 2186, 2566, 2695
BstFNI CGCG 2 cut(s) 1198, 2247
BstHHI GCGC 2 cut(s) 967, 2249
BstKTI GATC 5 cut(s) 537, 873, 1530, 2200, 2849
BstMAI GTCTC 1 cut(s) 2739
BstMBI GATC 5 cut(s) 534, 870, 1527, 2197, 2846
BstMWI GCNNNNNNNGC 2 cut(s) 1637, 2451
BstNI CCWGG 3 cut(s) 291, 660, 797
BstNSI RCATGY 2 cut(s) 1220, 2665
BstSCI CCNGG 5 cut(s) 58, 289, 658, 795, 2685
BstSLI GKGCMC 1 cut(s) 84
BstUI CGCG 2 cut(s) 1198, 2247
BstV1I GCAGC 4 cut(s) 1294, 1994, 2095, 2548
BstV2I GAAGAC 1 cut(s) 2483
BstX2I RGATCY 1 cut(s) 870
BstXI CCANNNNNNTGG 1 cut(s) 381
BstYI RGATCY 1 cut(s) 870
BsuRI GGCC 2 cut(s) 723, 2638
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 9 cut(s) 654, 919, 947, 1168, 1258, 2155, 2186, 2566, 2695
BtsI GCAGTG 1 cut(s) 1189
BtsIMutI CAGTG 5 cut(s) 243, 1189, 1353, 1503, 1993
Cac8I GCNNGC 7 cut(s) 160, 1196, 1447, 2245, 2506, 2663, 2707
CfoI GCGC 2 cut(s) 967, 2249
Cfr10I RCCGGY 1 cut(s) 495
Cfr13I GGNCC 3 cut(s) 722, 1757, 2033
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 9 cut(s) 366, 1664, 1803, 1824, 2215, 2221, 2410, 2613, 2802
CspAI ACCGGT 1 cut(s) 495
CspCI CAANNNNNGTGG 2 cut(s) 1210, 1245
CviQI GTAC 9 cut(s) 366, 1664, 1803, 1824, 2215, 2221, 2410, 2613, 2802
DpnI GATC 5 cut(s) 536, 872, 1529, 2199, 2848
DpnII GATC 5 cut(s) 534, 870, 1527, 2197, 2846
DraI TTTAAA 1 cut(s) 2124
Eam1104I CTCTTC 7 cut(s) 750, 1144, 1285, 1927, 2304, 2444, 2818
EarI CTCTTC 7 cut(s) 750, 1144, 1285, 1927, 2304, 2444, 2818
Eco130I CCWWGG 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 2638
Eco31I GGTCTC 1 cut(s) 2739
Eco32I GATATC 2 cut(s) 1579, 2142
Eco47I GGWCC 2 cut(s) 1757, 2033
Eco57I CTGAAG 2 cut(s) 992, 2808
Eco88I CYCGRG 1 cut(s) 2334
EcoNI CCTNNNNNAGG 3 cut(s) 522, 1743, 1803
EcoRII CCWGG 3 cut(s) 289, 658, 795
EcoRV GATATC 2 cut(s) 1579, 2142
EcoT14I CCWWGG 1 cut(s) 123
EcoT22I ATGCAT 3 cut(s) 705, 1218, 2623
ErhI CCWWGG 1 cut(s) 123
FaqI GGGAC 5 cut(s) 75, 1373, 1738, 1743, 2669
FauI CCCGC 2 cut(s) 1203, 2438
FauNDI CATATG 1 cut(s) 595
FbaI TGATCA 1 cut(s) 534
Fnu4HI GCNGC 4 cut(s) 1308, 1983, 2084, 2537
FokI GGATG 9 cut(s) 641, 926, 934, 1175, 1265, 2142, 2193, 2573, 2702
Fsp4HI GCNGC 4 cut(s) 1308, 1983, 2084, 2537
FspBI CTAG 6 cut(s) 311, 524, 1178, 2165, 2495, 2799
FspI TGCGCA 1 cut(s) 966
GlaI GCGC 2 cut(s) 966, 2248
GluI GCNGC 4 cut(s) 1308, 1983, 2084, 2537
GsuI CTGGAG 1 cut(s) 669
HaeIII GGCC 2 cut(s) 723, 2638
HapII CCGG 7 cut(s) 59, 163, 432, 496, 688, 1016, 2687
HhaI GCGC 2 cut(s) 967, 2249
Hin6I GCGC 2 cut(s) 965, 2247
HinP1I GCGC 2 cut(s) 965, 2247
HindIII AAGCTT 1 cut(s) 2300
HinfI GANTC 8 cut(s) 71, 203, 714, 1019, 1111, 1704, 1735, 2000
HpaII CCGG 7 cut(s) 59, 163, 432, 496, 688, 1016, 2687
HphI GGTGA 2 cut(s) 164, 950
Hpy166II GTNNAC 7 cut(s) 287, 713, 941, 1501, 1536, 2215, 2410
Hpy188III TCNNGA 8 cut(s) 518, 688, 902, 1589, 1739, 2114, 2495, 2782
Hpy8I GTNNAC 7 cut(s) 287, 713, 941, 1501, 1536, 2215, 2410
Hpy99I CGWCG 1 cut(s) 2632
HpyAV CCTTC 6 cut(s) 1274, 1292, 1600, 2015, 2186, 2663
HpyCH4III ACNGT 8 cut(s) 247, 765, 854, 1507, 1556, 2414, 2480, 2632
HpyF10VI GCNNNNNNNGC 2 cut(s) 1637, 2451
HspAI GCGC 2 cut(s) 965, 2247
Kpn2I TCCGGA 1 cut(s) 687
Ksp22I TGATCA 1 cut(s) 534
Kzo9I GATC 5 cut(s) 534, 870, 1527, 2197, 2846
LguI GCTCTTC 3 cut(s) 1144, 2444, 2818
LmnI GCTCC 2 cut(s) 303, 650
Lsp1109I GCAGC 4 cut(s) 1294, 1994, 2095, 2548
LweI GCATC 8 cut(s) 88, 145, 543, 976, 1047, 1421, 2248, 2630
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 6 cut(s) 311, 524, 1178, 2165, 2495, 2799
MaeIII GTNAC 6 cut(s) 256, 1507, 1678, 2052, 2384, 2692
MalI GATC 5 cut(s) 536, 872, 1529, 2199, 2848
MboI GATC 5 cut(s) 534, 870, 1527, 2197, 2846
MfeI CAATTG 2 cut(s) 1222, 2841
MflI RGATCY 1 cut(s) 870
MhlI GDGCHC 2 cut(s) 84, 2813
MlyI GAGTC 3 cut(s) 80, 197, 708
MmeI TCCRAC 4 cut(s) 130, 649, 891, 2651
Mph1103I ATGCAT 3 cut(s) 705, 1218, 2623
MroI TCCGGA 1 cut(s) 687
MroXI GAANNNNTTC 3 cut(s) 1138, 1185, 1610
MseI TTAA 8 cut(s) 398, 605, 924, 1157, 1400, 2079, 2123, 2595
MslI CAYNNNNRTG 3 cut(s) 708, 883, 1880
MspA1I CMGCKG 3 cut(s) 571, 1820, 2539
MspI CCGG 7 cut(s) 59, 163, 432, 496, 688, 1016, 2687
MspR9I CCNGG 5 cut(s) 60, 291, 660, 797, 2687
MunI CAATTG 2 cut(s) 1222, 2841
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 3 cut(s) 291, 660, 797
MvnI CGCG 2 cut(s) 1198, 2247
MwoI GCNNNNNNNGC 2 cut(s) 1637, 2451
NciI CCSGG 2 cut(s) 60, 2687
NcoI CCATGG 1 cut(s) 123
NdeI CATATG 1 cut(s) 595
NdeII GATC 5 cut(s) 534, 870, 1527, 2197, 2846
NlaIV GGNNCC 6 cut(s) 81, 652, 724, 1759, 2347, 2364
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 4 cut(s) 256, 1678, 2384, 2692
NsbI TGCGCA 1 cut(s) 966
NsiI ATGCAT 3 cut(s) 705, 1218, 2623
NspI RCATGY 2 cut(s) 1220, 2665
NspV TTCGAA 1 cut(s) 1132
PaeI GCATGC 1 cut(s) 2665
PceI AGGCCT 1 cut(s) 2638
PciSI GCTCTTC 3 cut(s) 1144, 2444, 2818
PctI GAATGC 1 cut(s) 703
PdmI GAANNNNTTC 3 cut(s) 1138, 1185, 1610
PfeI GAWTC 5 cut(s) 1019, 1111, 1704, 1735, 2000
PfoI TCCNGGA 1 cut(s) 2685
PinAI ACCGGT 1 cut(s) 495
PkrI GCNGC 4 cut(s) 1309, 1984, 2085, 2538
PleI GAGTC 3 cut(s) 79, 197, 708
PpsI GAGTC 3 cut(s) 79, 197, 708
Psp6I CCWGG 3 cut(s) 289, 658, 795
PspGI CCWGG 3 cut(s) 289, 658, 795
PspN4I GGNNCC 6 cut(s) 81, 652, 724, 1759, 2347, 2364
PspPI GGNCC 3 cut(s) 722, 1757, 2033
PsrI GAACNNNNNNTAC 2 cut(s) 1807, 1839
PsuI RGATCY 1 cut(s) 870
PvuII CAGCTG 2 cut(s) 571, 2539
RsaI GTAC 9 cut(s) 367, 1665, 1804, 1825, 2216, 2222, 2411, 2614, 2803
RsaNI GTAC 9 cut(s) 366, 1664, 1803, 1824, 2215, 2221, 2410, 2613, 2802
RseI CAYNNNNRTG 3 cut(s) 708, 883, 1880
SapI GCTCTTC 3 cut(s) 1144, 2444, 2818
SaqAI TTAA 8 cut(s) 398, 605, 924, 1157, 1400, 2079, 2123, 2595
SatI GCNGC 4 cut(s) 1308, 1983, 2084, 2537
Sau3AI GATC 5 cut(s) 534, 870, 1527, 2197, 2846
Sau96I GGNCC 3 cut(s) 722, 1757, 2033
ScaI AGTACT 1 cut(s) 1665
SchI GAGTC 3 cut(s) 80, 197, 708
ScrFI CCNGG 5 cut(s) 60, 291, 660, 797, 2687
SduI GDGCHC 2 cut(s) 84, 2813
SexAI ACCWGGT 1 cut(s) 289
SfaNI GCATC 8 cut(s) 88, 145, 543, 976, 1047, 1421, 2248, 2630
SfuI TTCGAA 1 cut(s) 1132
SinI GGWCC 2 cut(s) 1757, 2033
SmiMI CAYNNNNRTG 3 cut(s) 708, 883, 1880
SmlI CTYRAG 1 cut(s) 1247
SmoI CTYRAG 1 cut(s) 1247
SpeI ACTAGT 2 cut(s) 310, 2798
SphI GCATGC 1 cut(s) 2665
SseBI AGGCCT 1 cut(s) 2638
SsiI CCGC 4 cut(s) 1196, 1523, 1818, 2445
SspI AATATT 5 cut(s) 137, 739, 859, 1316, 1618
SspMI CTAG 6 cut(s) 311, 524, 1178, 2165, 2495, 2799
StuI AGGCCT 1 cut(s) 2638
StyD4I CCNGG 5 cut(s) 58, 289, 658, 795, 2685
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 8 cut(s) 247, 765, 854, 1507, 1556, 2414, 2480, 2632
TaqI TCGA 2 cut(s) 1132, 1702
TatI WGTACW 6 cut(s) 1663, 1802, 2220, 2409, 2612, 2801
TfiI GAWTC 5 cut(s) 1019, 1111, 1704, 1735, 2000
Tru1I TTAA 8 cut(s) 398, 605, 924, 1157, 1400, 2079, 2123, 2595
Tru9I TTAA 8 cut(s) 398, 605, 924, 1157, 1400, 2079, 2123, 2595
TscAI CASTG 5 cut(s) 250, 1196, 1360, 1510, 1993
TseFI GTSAC 4 cut(s) 256, 1678, 2384, 2692
TseI GCWGC 4 cut(s) 1307, 1982, 2083, 2536
Tsp45I GTSAC 4 cut(s) 256, 1678, 2384, 2692
TspRI CASTG 5 cut(s) 250, 1196, 1360, 1510, 1993
VpaK11BI GGWCC 2 cut(s) 1757, 2033
XagI CCTNNNNNAGG 3 cut(s) 522, 1743, 1803
XapI RAATTY 9 cut(s) 438, 529, 800, 1183, 1698, 1957, 2095, 2117, 2785
XbaI TCTAGA 1 cut(s) 2494
XceI RCATGY 2 cut(s) 1220, 2665
XcmI CCANNNNNNNNNTGG 2 cut(s) 661, 2356
XmnI GAANNNNTTC 3 cut(s) 1138, 1185, 1610
XspI CTAG 6 cut(s) 311, 524, 1178, 2165, 2495, 2799
ZrmI AGTACT 1 cut(s) 1665
Zsp2I ATGCAT 3 cut(s) 705, 1218, 2623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.