pycom05g23980

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
25594825 .. 25596056
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23980.5

Sequence Viewer

Length: 720 bp
ATGAGGAGGAAAAAATCAGAAAAAGAAGATGATGAAGATATTCTAGGATTAGGCCCCCGGCCATATACTTTCAGTTATGCTGAATTGAGAGCTGCAACTGAAGATTTTAATCCTTCAAATAAGCTAGGAGAGGGAGGATATGGCCCCGTTTATAAGGGTACACTTTCTGATGGTAGAGTAGTGGCTGTGAAGCAACTTTCAGTATCATCTCACCAAGGGAAGAGGCAATTTGTATCTGAAATTGCTACCATATCTGCTGTGCAACATCGGAATTTAGTGAAATTGTATGGATGCTGCATTGAAGGCAACCACCACATTTTGGTGTATGAGTATCTTGAAAACAAGAGCCTTGATCAATCACTTCTGAAATTTGGAACAAGTAACTTGCACCTTGACTGGCCTACTCGATTCAATATATTGTTGGGAACAGCACGAGGACTTGCTTACCTTCATGAGGAGTCAAGGCCAAGGATTGTACATCGAGATGTCAAAGCAAGTAATATTTTGCTCGATGCAGAACTCTCCCCAAAAATATCAGATTTTGGATTGGCAAAGCTTTATGATGACGAGAAAACCCACATCAGCACCCGGGTTGCAGGGACAATGCTATTTGGCACCAGAGTATGCATTGTTTGGACATTTGACAGAGAAGGCCGATGTGTTTGGTTTTGGAGTCGTTGTTTTAGAGATCCTCGCCGGGAGACCAAACTCTTACAATAA

Protein Analysis

240

Amino Acids

27.31

Weight (kDa)

8.9

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 614
AccB7I CCANNNNNTGG 1 cut(s) 319
AclWI GGATC 1 cut(s) 683
AcoI YGGCCR 1 cut(s) 59
AcsI RAATTY 2 cut(s) 271, 368
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 2 cut(s) 160, 477
AfiI CCNNNNNNNGG 2 cut(s) 319, 454
AgsI TTSAA 4 cut(s) 117, 302, 338, 412
AluBI AGCT 3 cut(s) 92, 124, 556
AluI AGCT 3 cut(s) 92, 124, 556
Alw26I GTCTC 1 cut(s) 695
AlwI GGATC 1 cut(s) 683
Ama87I CYCGRG 1 cut(s) 588
AoxI GGCC 6 cut(s) 52, 59, 142, 398, 464, 652
ApeKI GCWGC 2 cut(s) 92, 294
ApoI RAATTY 2 cut(s) 271, 368
Asp700I GAANNNNTTC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 53, 143
AsuC2I CCSGG 4 cut(s) 58, 589, 590, 698
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 588
BanI GGYRCC 1 cut(s) 614
BauI CACGAG 1 cut(s) 432
BbvI GCAGC 2 cut(s) 79, 281
BccI CCATC 1 cut(s) 164
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 4 cut(s) 58, 589, 590, 698
BcoDI GTCTC 1 cut(s) 695
BfaI CTAG 2 cut(s) 44, 125
BisI GCNGC 2 cut(s) 93, 295
BlsI GCNGC 2 cut(s) 94, 296
Bme1390I CCNGG 4 cut(s) 58, 589, 590, 698
BmeT110I CYCGRG 1 cut(s) 588
BmgT120I GGNCC 2 cut(s) 53, 143
BmiI GGNNCC 3 cut(s) 55, 145, 616
BmrFI CCNGG 4 cut(s) 58, 589, 590, 698
BmsI GCATC 2 cut(s) 281, 502
BpuMI CCSGG 4 cut(s) 58, 589, 590, 698
BsaBI GATNNNNATC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 695
BsaJI CCNNGG 4 cut(s) 56, 214, 467, 588
BsaXI ACNNNNNCTCC 2 cut(s) 664, 694
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 454
Bse1I ACTGG 1 cut(s) 401
Bse8I GATNNNNATC 1 cut(s) 108
BseDI CCNNGG 4 cut(s) 56, 214, 467, 588
BseGI GGATG 1 cut(s) 296
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 319, 454
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 2 cut(s) 19, 470
BseXI GCAGC 2 cut(s) 79, 281
BshFI GGCC 6 cut(s) 54, 61, 144, 400, 466, 654
BshNI GGYRCC 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 588
BsiSI CCGG 3 cut(s) 58, 589, 697
BslFI GGGAC 1 cut(s) 613
BslI CCNNNNNNNGG 2 cut(s) 319, 454
BsmAI GTCTC 1 cut(s) 695
BsmFI GGGAC 1 cut(s) 613
BsnI GGCC 6 cut(s) 54, 61, 144, 400, 466, 654
Bso31I GGTCTC 1 cut(s) 695
BsoBI CYCGRG 1 cut(s) 588
Bsp1407I TGTACA 1 cut(s) 475
Bsp143I GATC 2 cut(s) 352, 688
BspANI GGCC 6 cut(s) 54, 61, 144, 400, 466, 654
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 3 cut(s) 55, 145, 616
BspPI GGATC 1 cut(s) 683
BspT107I GGYRCC 1 cut(s) 614
BspTNI GGTCTC 1 cut(s) 695
BsrGI TGTACA 1 cut(s) 475
BsrI ACTGG 1 cut(s) 401
BssECI CCNNGG 4 cut(s) 56, 214, 467, 588
BssMI GATC 2 cut(s) 352, 688
BssSI CACGAG 1 cut(s) 432
BssT1I CCWWGG 2 cut(s) 214, 467
Bst2BI CACGAG 1 cut(s) 432
Bst6I CTCTTC 1 cut(s) 215
BstAUI TGTACA 1 cut(s) 475
BstENI CCTNNNNNAGG 1 cut(s) 452
BstF5I GGATG 1 cut(s) 296
BstKTI GATC 2 cut(s) 355, 691
BstMAI GTCTC 1 cut(s) 695
BstMBI GATC 2 cut(s) 352, 688
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstSCI CCNGG 4 cut(s) 56, 587, 588, 696
BstV1I GCAGC 2 cut(s) 79, 281
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BsuRI GGCC 6 cut(s) 54, 61, 144, 400, 466, 654
BtsCI GGATG 1 cut(s) 296
CciI TCATGA 1 cut(s) 451
Cfr13I GGNCC 2 cut(s) 53, 143
Cfr9I CCCGGG 1 cut(s) 588
Csp6I GTAC 2 cut(s) 159, 476
CviAII CATG 1 cut(s) 452
CviQI GTAC 2 cut(s) 159, 476
DpnI GATC 2 cut(s) 354, 690
DpnII GATC 2 cut(s) 352, 688
EaeI YGGCCR 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco130I CCWWGG 2 cut(s) 214, 467
Eco31I GGTCTC 1 cut(s) 695
Eco57I CTGAAG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 588
EcoNI CCTNNNNNAGG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 53
EcoT14I CCWWGG 2 cut(s) 214, 467
EcoT22I ATGCAT 1 cut(s) 629
ErhI CCWWGG 2 cut(s) 214, 467
FaeI CATG 1 cut(s) 455
FaqI GGGAC 1 cut(s) 613
FatI CATG 1 cut(s) 451
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 93, 295
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 2 cut(s) 93, 295
FspBI CTAG 2 cut(s) 44, 125
GluI GCNGC 2 cut(s) 93, 295
HaeIII GGCC 6 cut(s) 54, 61, 144, 400, 466, 654
HapII CCGG 3 cut(s) 58, 589, 697
Hin1II CATG 1 cut(s) 455
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 3 cut(s) 408, 458, 673
HpaII CCGG 3 cut(s) 58, 589, 697
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 6 cut(s) 19, 169, 238, 270, 366, 538
Hpy188III TCNNGA 3 cut(s) 335, 452, 482
Hpy8I GTNNAC 1 cut(s) 161
HpyAV CCTTC 4 cut(s) 123, 296, 458, 644
HpyCH4V TGCA 7 cut(s) 95, 262, 297, 388, 515, 596, 627
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
Hsp92II CATG 1 cut(s) 455
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 2 cut(s) 352, 688
LpnPI CCDG 6 cut(s) 71, 382, 582, 602, 631, 710
Lsp1109I GCAGC 2 cut(s) 79, 281
LweI GCATC 2 cut(s) 281, 502
MaeI CTAG 2 cut(s) 44, 125
MaeIII GTNAC 1 cut(s) 380
MalI GATC 2 cut(s) 354, 690
MboI GATC 2 cut(s) 352, 688
MboII GAAGA 4 cut(s) 38, 47, 113, 232
MflI RGATCY 1 cut(s) 688
MluCI AATT 6 cut(s) 83, 227, 240, 271, 281, 368
MlyI GAGTC 2 cut(s) 467, 682
MnlI CCTC 6 cut(s) 124, 128, 216, 428, 448, 702
Mph1103I ATGCAT 1 cut(s) 629
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 2 cut(s) 320, 483
MspI CCGG 3 cut(s) 58, 589, 697
MspR9I CCNGG 4 cut(s) 58, 589, 590, 698
MwoI GCNNNNNNNGC 1 cut(s) 303
NciI CCSGG 4 cut(s) 58, 589, 590, 698
NdeII GATC 2 cut(s) 352, 688
NlaIII CATG 1 cut(s) 455
NlaIV GGNNCC 3 cut(s) 55, 145, 616
NsiI ATGCAT 1 cut(s) 629
PagI TCATGA 1 cut(s) 451
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 408
PflMI CCANNNNNTGG 1 cut(s) 319
PkrI GCNGC 2 cut(s) 94, 296
PleI GAGTC 2 cut(s) 466, 681
PpsI GAGTC 2 cut(s) 466, 681
PsiI TTATAA 1 cut(s) 153
PspN4I GGNNCC 3 cut(s) 55, 145, 616
PspPI GGNCC 2 cut(s) 53, 143
PsuI RGATCY 1 cut(s) 688
RsaI GTAC 2 cut(s) 160, 477
RsaNI GTAC 2 cut(s) 159, 476
RseI CAYNNNNRTG 2 cut(s) 320, 483
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 93, 295
Sau3AI GATC 2 cut(s) 352, 688
Sau96I GGNCC 2 cut(s) 53, 143
SchI GAGTC 2 cut(s) 467, 682
ScrFI CCNGG 4 cut(s) 58, 589, 590, 698
SetI ASST 5 cut(s) 94, 126, 393, 450, 558
SfaNI GCATC 2 cut(s) 281, 502
SmaI CCCGGG 1 cut(s) 590
SmiMI CAYNNNNRTG 2 cut(s) 320, 483
Sse9I AATT 6 cut(s) 83, 227, 240, 271, 281, 368
SspI AATATT 1 cut(s) 502
SspMI CTAG 2 cut(s) 44, 125
StyD4I CCNGG 4 cut(s) 56, 587, 588, 696
StyI CCWWGG 2 cut(s) 214, 467
TaqI TCGA 3 cut(s) 406, 481, 510
TasI AATT 6 cut(s) 83, 227, 240, 271, 281, 368
TatI WGTACW 1 cut(s) 475
TfiI GAWTC 1 cut(s) 408
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseI GCWGC 2 cut(s) 92, 294
TspDTI ATGAA 2 cut(s) 48, 440
TspMI CCCGGG 1 cut(s) 588
Van91I CCANNNNNTGG 1 cut(s) 319
XagI CCTNNNNNAGG 1 cut(s) 452
XapI RAATTY 2 cut(s) 271, 368
XmaI CCCGGG 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 2 cut(s) 44, 125
Zsp2I ATGCAT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.