Rh5DG137600

Di-glucose binding within endoplasmic reticulum

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
13857951 .. 13862259
4309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG137600.1

Sequence Viewer

Length: 633 bp
ATGAAGCAAGTAGCTACCTTCTCTTTCGGTAGAATATGTGATGACTACTTCTTCTTCTGTCTTATCTTCTTCCTGGGTTGCTTCTGGTTCCATGCTTCCACTGCCCAAAATGCTACTACGGACCCAACCGAAGTGGCGGCGTTGAACTCTATATTACTACAATGGGACGCGCCAGCGGTGCCTCTGTGGAACATCAGTGGAGAGCCATGCAGTGGATCGGCCATCAATGGCACCGCCTTCGAGGACGGCCTCAATAACCCAGCCATCACTTGCGACTGTAGTTTTGAAAGTAACACCACCTGCCATATCACTCAATTGAGAGTTTATGCTTTGGACAAAACAGGAGTGTTACCTGAAGAACTTGTGGCTTTGAAATATCTTACTTTTTTCAAAATCGATCAGAACTTTTTCACCGGTCCCCTACCAGCATGGATTGGCAACATGTCTGAGTTGACTACGTTGTCGATTGCCCACAATGACTTCTATGGACCCATCCCCAAGGAGCTTGGAAACCTTCAGAAACTAAATCTGCTGTCCTTTGGAATAAATAATTTCTCTGGAACACTGCCTCCAGAACTTGGTAATTTAGTCAATCTCGAAGAGCTATCTATATTTTCCGGTTTCCCGGATTGA

Protein Analysis

210

Amino Acids

23.13

Weight (kDa)

4.35

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 95 - 204 8.8e-10 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 308
AasI GACNNNNNNGTC 1 cut(s) 460
Acc36I ACCTGC 1 cut(s) 308
AccB1I GGYRCC 2 cut(s) 178, 230
AccB7I CCANNNNNTGG 2 cut(s) 212, 578
AccII CGCG 1 cut(s) 170
AciI CCGC 3 cut(s) 137, 176, 234
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 219
AcuI CTGAAG 2 cut(s) 375, 500
AfiI CCNNNNNNNGG 2 cut(s) 212, 578
AflIII ACRYGT 1 cut(s) 441
AgeI ACCGGT 1 cut(s) 413
AgsI TTSAA 4 cut(s) 145, 287, 373, 391
AjnI CCWGG 1 cut(s) 72
AloI GAACNNNNNNTCC 2 cut(s) 553, 585
AluBI AGCT 3 cut(s) 14, 505, 604
AluI AGCT 3 cut(s) 14, 505, 604
AlwI GGATC 1 cut(s) 223
AoxI GGCC 2 cut(s) 219, 247
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AsiGI ACCGGT 1 cut(s) 413
Asp700I GAANNNNTTC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 3 cut(s) 121, 416, 488
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 1 cut(s) 403
AvaII GGWCC 3 cut(s) 121, 416, 488
BanI GGYRCC 2 cut(s) 178, 230
BccI CCATC 3 cut(s) 230, 272, 500
BceAI ACGGC 1 cut(s) 262
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 74, 626
Bme18I GGWCC 3 cut(s) 121, 416, 488
BmgT120I GGNCC 3 cut(s) 121, 416, 488
BmiI GGNNCC 6 cut(s) 89, 123, 180, 232, 418, 490
BmrFI CCNGG 2 cut(s) 74, 626
BpmI CTGGAG 1 cut(s) 555
BpuMI CCSGG 1 cut(s) 626
Bsa29I ATCGAT 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 73, 498
BsaWI WCCGGW 2 cut(s) 413, 617
BsaXI ACNNNNNCTCC 2 cut(s) 553, 583
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 578
Bse118I RCCGGY 1 cut(s) 413
BseBI CCWGG 1 cut(s) 74
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 2 cut(s) 73, 498
BseGI GGATG 1 cut(s) 492
BseLI CCNNNNNNNGG 2 cut(s) 212, 578
BseMII CTCAG 1 cut(s) 438
BseYI CCCAGC 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 2 cut(s) 221, 249
BshNI GGYRCC 2 cut(s) 178, 230
BshTI ACCGGT 1 cut(s) 413
BshVI ATCGAT 1 cut(s) 396
BsiSI CCGG 3 cut(s) 414, 618, 626
BslFI GGGAC 2 cut(s) 179, 402
BslI CCNNNNNNNGG 2 cut(s) 212, 578
BsmFI GGGAC 2 cut(s) 179, 402
BsnI GGCC 2 cut(s) 221, 249
Bsp143I GATC 2 cut(s) 215, 397
BspACI CCGC 3 cut(s) 137, 176, 234
BspANI GGCC 2 cut(s) 221, 249
BspCNI CTCAG 1 cut(s) 439
BspDI ATCGAT 1 cut(s) 396
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 6 cut(s) 89, 123, 180, 232, 418, 490
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 594
BspT107I GGYRCC 2 cut(s) 178, 230
BsrFI RCCGGY 1 cut(s) 413
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 2 cut(s) 73, 498
BssMI GATC 2 cut(s) 215, 397
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 594
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 492
BstFNI CGCG 1 cut(s) 170
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 2 cut(s) 218, 400
BstMBI GATC 2 cut(s) 215, 397
BstMWI GCNNNNNNNGC 3 cut(s) 101, 110, 178
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 445
BstSCI CCNGG 2 cut(s) 72, 624
BstSFI CTRYAG 1 cut(s) 277
BstUI CGCG 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 396
BsuRI GGCC 2 cut(s) 221, 249
BsuTUI ATCGAT 1 cut(s) 396
BtsCI GGATG 1 cut(s) 492
BtsI GCAGTG 3 cut(s) 99, 217, 563
BtsIMutI CAGTG 4 cut(s) 99, 202, 217, 563
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 1 cut(s) 174
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 3 cut(s) 121, 416, 488
ClaI ATCGAT 1 cut(s) 396
CseI GACGC 1 cut(s) 176
CspAI ACCGGT 1 cut(s) 413
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviAII CATG 4 cut(s) 92, 207, 429, 442
CviJI RGCY 8 cut(s) 14, 205, 221, 249, 263, 368, 505, 604
CviKI_1 RGCY 8 cut(s) 14, 205, 221, 249, 263, 368, 505, 604
DdeI CTNAG 1 cut(s) 447
DpnI GATC 2 cut(s) 217, 399
DpnII GATC 2 cut(s) 215, 397
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Eco130I CCWWGG 1 cut(s) 498
Eco47I GGWCC 3 cut(s) 121, 416, 488
Eco57I CTGAAG 2 cut(s) 375, 500
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 4 cut(s) 95, 210, 432, 445
FaqI GGGAC 2 cut(s) 179, 402
FatI CATG 4 cut(s) 91, 206, 428, 441
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 479
Fsp4HI GCNGC 1 cut(s) 138
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 138
GsaI CCCAGC 1 cut(s) 263
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 2 cut(s) 221, 249
HapII CCGG 3 cut(s) 414, 618, 626
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 172
Hin1II CATG 4 cut(s) 95, 210, 432, 445
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HpaII CCGG 3 cut(s) 414, 618, 626
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 3 cut(s) 402, 448, 519
Hpy188III TCNNGA 3 cut(s) 558, 572, 596
Hpy8I GTNNAC 1 cut(s) 453
HpyAV CCTTC 3 cut(s) 28, 247, 524
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 110, 178
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 4 cut(s) 95, 210, 432, 445
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 2 cut(s) 215, 397
LguI GCTCTTC 1 cut(s) 594
LmnI GCTCC 1 cut(s) 502
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 2 cut(s) 290, 348
MalI GATC 2 cut(s) 217, 399
MboI GATC 2 cut(s) 215, 397
MboII GAAGA 6 cut(s) 43, 46, 58, 61, 368, 611
MfeI CAATTG 1 cut(s) 314
MluCI AATT 3 cut(s) 314, 550, 583
MnlI CCTC 4 cut(s) 192, 235, 260, 579
MroXI GAANNNNTTC 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 3 cut(s) 414, 618, 626
MspR9I CCNGG 2 cut(s) 74, 626
MunI CAATTG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 3 cut(s) 101, 110, 178
NciI CCSGG 1 cut(s) 626
NdeII GATC 2 cut(s) 215, 397
NlaIII CATG 4 cut(s) 95, 210, 432, 445
NlaIV GGNNCC 6 cut(s) 89, 123, 180, 232, 418, 490
NspI RCATGY 1 cut(s) 445
PaqCI CACCTGC 1 cut(s) 308
PciI ACATGT 1 cut(s) 441
PciSI GCTCTTC 1 cut(s) 594
PdmI GAANNNNTTC 1 cut(s) 407
PflMI CCANNNNNTGG 2 cut(s) 212, 578
PfoI TCCNGGA 1 cut(s) 624
PinAI ACCGGT 1 cut(s) 413
PkrI GCNGC 1 cut(s) 139
PscI ACATGT 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 6 cut(s) 89, 123, 180, 232, 418, 490
PspPI GGNCC 3 cut(s) 121, 416, 488
SapI GCTCTTC 1 cut(s) 594
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 2 cut(s) 215, 397
Sau96I GGNCC 3 cut(s) 121, 416, 488
ScrFI CCNGG 2 cut(s) 74, 626
SetI ASST 8 cut(s) 16, 20, 302, 355, 461, 507, 516, 606
SfcI CTRYAG 1 cut(s) 277
SinI GGWCC 3 cut(s) 121, 416, 488
Sse9I AATT 3 cut(s) 314, 550, 583
SsiI CCGC 3 cut(s) 137, 176, 234
StyD4I CCNGG 2 cut(s) 72, 624
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 461
TaqI TCGA 4 cut(s) 240, 396, 464, 597
TasI AATT 3 cut(s) 314, 550, 583
TauI GCSGC 1 cut(s) 140
TscAI CASTG 4 cut(s) 106, 202, 217, 570
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 4 cut(s) 106, 202, 217, 570
Van91I CCANNNNNTGG 2 cut(s) 212, 578
VpaK11BI GGWCC 3 cut(s) 121, 416, 488
XceI RCATGY 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.