Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000088

Physical Location & Seq

Genomic Coordinates Reverse (-)

26020206 .. 26023505

Gene Structure 3300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0249900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAGTTGATTCTGTCTTATTTCGATGAGGTGAAGAAGGTAGGTAACTCAGAGAAAAGGAAGAGGGGGACGGGAACAATCGGTGTATCAATACGTAATGGAAGAGAAATCCTTTTAAAGGACGATTGGAGAAGGTTAGAGGAGCCTTATGGAAGTATATTCATAACTATTCCAACTGTTCTTGATTCATCATTGGCTCCAGAAGGGCACTGTATTCTTCATATTTACGACCTCTTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

80

Amino Acids

9.19

Weight (kDa)

6.27

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca	FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica	MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica	Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis	pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis	RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata	RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora	Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa	Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha	Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana	Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	144, 198
BpmI	CTGGAG	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	144, 198
Bst4CI	ACNGT	2 cut(s)	178, 212
Bst6I	CTCTTC	3 cut(s)	56, 97, 239
BstBAI	YACGTR	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	49
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	210
BstSNI	TACGTA	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	208
CviJI	RGCY	2 cut(s)	145, 197
CviKI_1	RGCY	2 cut(s)	145, 197
DdeI	CTNAG	1 cut(s)	49
DraI	TTTAAA	1 cut(s)	117
Eam1104I	CTCTTC	3 cut(s)	56, 97, 239
EarI	CTCTTC	3 cut(s)	56, 97, 239
Eco105I	TACGTA	1 cut(s)	95
EcoNI	CCTNNNNNAGG	1 cut(s)	116
FaiI	YATR	4 cut(s)	150, 158, 164, 222
FaqI	GGGAC	1 cut(s)	82
GsuI	CTGGAG	1 cut(s)	183
HinfI	GANTC	2 cut(s)	10, 185
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	182, 200
HpyAV	CCTTC	3 cut(s)	31, 126, 197
HpyCH4III	ACNGT	2 cut(s)	178, 212
HpyCH4IV	ACGT	1 cut(s)	94
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	142, 202
LpnPI	CCDG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	44
MboII	GAAGA	5 cut(s)	46, 73, 114, 209, 226
MhlI	GDGCHC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	4 cut(s)	22, 57, 133, 242
MseI	TTAA	1 cut(s)	116
NlaIV	GGNNCC	2 cut(s)	144, 198
PfeI	GAWTC	2 cut(s)	10, 185
Ppu21I	YACGTR	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	144, 198
SaqAI	TTAA	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	6 cut(s)	33, 42, 46, 97, 137, 234
SgeI	CNNG	3 cut(s)	84, 194, 212
SnaBI	TACGTA	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	178, 212
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	10, 185
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	1 cut(s)	215
TspDTI	ATGAA	3 cut(s)	151, 177, 209
TspRI	CASTG	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.