Rh5BG136800

Di-glucose binding within endoplasmic reticulum

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
13997924 .. 13999078
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG136800.1

Sequence Viewer

Length: 530 bp
ATGAAGCAAGTGGCTACCTTCTCTTTCGGTAGAATATGTGATGACTACTTCTTCTGTCTTATCTTCTTCCTGGGTTGCTTCTGGTTCCATGCTTCCACTGCCCAAAATGCTACTACGGACCCAACCGAAGTGGCGGCGTTGAACTCTATATTACTACAATGGGACGCGCCAGCGGTGCCTCTGTGGAACATCAGTGGAGAGCCATGCAGTGGATCGGCCATCAATGGCACCGACTTCGAGGACGGCCTCAATAACCCAGCCATCACTTGCGACTGTAGTTTTGAAAGTAACACCACCTGCCATATCACTCAATTGAGAGTTTATGCTTTGGACAAAACAGGAGTGTTACCTGAAGAACTTGTGGCTTTGAAATATCTTACTTTTTTCAAAATCGATCAGAACTTTTTCACCGGTCCCCTACCAGCATGGATTGGCAATATGTCTGAGTTGACTACGTTGTCGATTGCCCACAATGACTTCTATGGACCCATCCCCAAGGAGCTTGGAAACCTTAAGAAACTAAATCTGCT

Protein Analysis

176

Amino Acids

19.51

Weight (kDa)

4.54

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 98 - 174 8e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 305
AasI GACNNNNNNGTC 1 cut(s) 457
Acc36I ACCTGC 1 cut(s) 305
AccB1I GGYRCC 2 cut(s) 175, 227
AccB7I CCANNNNNTGG 1 cut(s) 209
AccII CGCG 1 cut(s) 167
AciI CCGC 2 cut(s) 134, 173
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 372
AfiI CCNNNNNNNGG 1 cut(s) 209
AflII CTTAAG 1 cut(s) 512
AgeI ACCGGT 1 cut(s) 410
AgsI TTSAA 4 cut(s) 142, 284, 370, 388
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 1 cut(s) 502
AluI AGCT 1 cut(s) 502
AlwI GGATC 1 cut(s) 220
AoxI GGCC 2 cut(s) 216, 244
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AsiGI ACCGGT 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 404
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 3 cut(s) 118, 413, 485
AsuHPI GGTGA 1 cut(s) 400
AvaII GGWCC 3 cut(s) 118, 413, 485
BanI GGYRCC 2 cut(s) 175, 227
BccI CCATC 3 cut(s) 227, 269, 497
BceAI ACGGC 1 cut(s) 259
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 274
BfrI CTTAAG 1 cut(s) 512
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 3 cut(s) 118, 413, 485
BmgT120I GGNCC 3 cut(s) 118, 413, 485
BmiI GGNNCC 6 cut(s) 86, 120, 177, 229, 415, 487
BmrFI CCNGG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 393
BsaJI CCNNGG 2 cut(s) 70, 495
BsaWI WCCGGW 1 cut(s) 410
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse118I RCCGGY 1 cut(s) 410
BseBI CCWGG 1 cut(s) 71
BseCI ATCGAT 1 cut(s) 393
BseDI CCNNGG 2 cut(s) 70, 495
BseGI GGATG 1 cut(s) 489
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 435
BseYI CCCAGC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 2 cut(s) 218, 246
BshNI GGYRCC 2 cut(s) 175, 227
BshTI ACCGGT 1 cut(s) 410
BshVI ATCGAT 1 cut(s) 393
BsiSI CCGG 1 cut(s) 411
BslFI GGGAC 2 cut(s) 176, 399
BslI CCNNNNNNNGG 1 cut(s) 209
BsmFI GGGAC 2 cut(s) 176, 399
BsnI GGCC 2 cut(s) 218, 246
Bsp143I GATC 2 cut(s) 212, 394
BspACI CCGC 2 cut(s) 134, 173
BspANI GGCC 2 cut(s) 218, 246
BspCNI CTCAG 1 cut(s) 436
BspDI ATCGAT 1 cut(s) 393
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 6 cut(s) 86, 120, 177, 229, 415, 487
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 1 cut(s) 220
BspT107I GGYRCC 2 cut(s) 175, 227
BspTI CTTAAG 1 cut(s) 512
BsrFI RCCGGY 1 cut(s) 410
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 2 cut(s) 70, 495
BssMI GATC 2 cut(s) 212, 394
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 275
BstAFI CTTAAG 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 1 cut(s) 489
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 2 cut(s) 215, 397
BstMBI GATC 2 cut(s) 212, 394
BstMWI GCNNNNNNNGC 3 cut(s) 98, 107, 175
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 274
BstUI CGCG 1 cut(s) 167
Bsu15I ATCGAT 1 cut(s) 393
BsuRI GGCC 2 cut(s) 218, 246
BsuTUI ATCGAT 1 cut(s) 393
BtsCI GGATG 1 cut(s) 489
BtsI GCAGTG 2 cut(s) 96, 214
BtsIMutI CAGTG 3 cut(s) 96, 199, 214
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 410
Cfr13I GGNCC 3 cut(s) 118, 413, 485
ClaI ATCGAT 1 cut(s) 393
CseI GACGC 1 cut(s) 173
CspAI ACCGGT 1 cut(s) 410
CspCI CAANNNNNGTGG 2 cut(s) 111, 146
CviAII CATG 3 cut(s) 89, 204, 426
CviJI RGCY 7 cut(s) 14, 202, 218, 246, 260, 365, 502
CviKI_1 RGCY 7 cut(s) 14, 202, 218, 246, 260, 365, 502
DdeI CTNAG 1 cut(s) 444
DpnI GATC 2 cut(s) 214, 396
DpnII GATC 2 cut(s) 212, 394
DrdI GACNNNNNNGTC 1 cut(s) 457
DseDI GACNNNNNNGTC 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 495
Eco47I GGWCC 3 cut(s) 118, 413, 485
Eco57I CTGAAG 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 3 cut(s) 92, 207, 429
FaiI YATR 9 cut(s) 37, 90, 149, 205, 303, 324, 427, 440, 483
FaqI GGGAC 2 cut(s) 176, 399
FatI CATG 3 cut(s) 88, 203, 425
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 1 cut(s) 135
GlaI GCGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 260
HaeIII GGCC 2 cut(s) 218, 246
HapII CCGG 1 cut(s) 411
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 169
Hin1II CATG 3 cut(s) 92, 207, 429
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HpaII CCGG 1 cut(s) 411
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 2 cut(s) 399, 445
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 107, 175
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 3 cut(s) 92, 207, 429
HspAI GCGC 1 cut(s) 167
Kzo9I GATC 2 cut(s) 212, 394
LmnI GCTCC 1 cut(s) 499
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 2 cut(s) 287, 345
MalI GATC 2 cut(s) 214, 396
MboI GATC 2 cut(s) 212, 394
MboII GAAGA 4 cut(s) 43, 55, 58, 365
MfeI CAATTG 1 cut(s) 311
MluCI AATT 1 cut(s) 311
MnlI CCTC 3 cut(s) 189, 232, 257
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 173
MspCI CTTAAG 1 cut(s) 512
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 3 cut(s) 98, 107, 175
NdeII GATC 2 cut(s) 212, 394
NlaIII CATG 3 cut(s) 92, 207, 429
NlaIV GGNNCC 6 cut(s) 86, 120, 177, 229, 415, 487
PaqCI CACCTGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 410
PkrI GCNGC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 256
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 6 cut(s) 86, 120, 177, 229, 415, 487
PspPI GGNCC 3 cut(s) 118, 413, 485
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 212, 394
Sau96I GGNCC 3 cut(s) 118, 413, 485
ScrFI CCNGG 1 cut(s) 71
SetI ASST 6 cut(s) 20, 299, 352, 458, 504, 513
SfcI CTRYAG 1 cut(s) 274
SinI GGWCC 3 cut(s) 118, 413, 485
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 1 cut(s) 311
SsiI CCGC 2 cut(s) 134, 173
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 458
TaqI TCGA 3 cut(s) 237, 393, 461
TasI AATT 1 cut(s) 311
TauI GCSGC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 3 cut(s) 103, 199, 214
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 3 cut(s) 103, 199, 214
Van91I CCANNNNNTGG 1 cut(s) 209
Vha464I CTTAAG 1 cut(s) 512
VpaK11BI GGWCC 3 cut(s) 118, 413, 485
XmnI GAANNNNTTC 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.