Rroxscaffold_1G00059010

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000088
Physical Location & Seq
Reverse (-)
81023453 .. 81027704
4252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059010.1

Sequence Viewer

Length: 1980 bp
ATGAAACTTTCATTTTCTCTGAGTCTTTGCCTTGGCATACAGCATACTGGTTACCAACCTACTTCAGATGAAAAGATTATTAAATCTAACCATACAACGAACACATGGCGGTGCAAGAACTTAGTGGTGAACAACTTCACCTTTGACAGTTCAAACGGAACTCTTCCTGGGTTGAATTGCCTTCAGAGAAATTTTCCATGCAATAGAAATACCCCACGATATGCAAACTTTTCAATCAAGTGTGGTGGACCAGAACTTAGAGGAAGTGATGGTATGGTGTATGAGGGAGAAAACTCAACTCTTGGCCCAGCAACATTTAGTGTAACCAGTACAGAGAAATGGGCGGTAAGCAATGTGGGTATGTTTGCTGACAGAAAGAATCCAGACTATGTTGTGAATACCCTGGCACAAGTCACTGGGACAGATGTGACCCCAGAGCTTTTCCAGACCTCAAGATTGTCTCCCGGATCGTTGAGGTACTTCGGCTTGGGTCTGGAGAATGGGCCTTATACTGGGGATCTAAAATGGAAGGACTTTGACATCTCGAAGGAGGCAGGTGGAGTTTTCAGAGCTGTTGCTAGAAACTTCAATGTTAATGTGTCAGAAAATTATCTTGACATTCATCTGTTCTGGGCTGGTAAGGGGACCTGCTGCATACCCGAACAAGGTCATTACGGCCCTCTAATATCAGCGAATTTACTCCCAACTGTTTCTGGGATTCCACCAACTACTCCGGGAAAGAAGAGCAACACAGGACTGATAGTTGGTATTGCAGTTCCTCTTGGAGTTGTGGGCTTGCTGTTAGTATTTTCAGTTCTATATTTGAGGAGGAAAAAAGCAGAAAAATATGATGATGAAGACCTTCTAGCACTAGAGAACAGACCAAATACATTTAGTTATTCTGAGTTGAAAGAAGCAACAGAAGATTTTAATCCTTCAAATAAGCTAGGAGAAGGAGGATATGGCCCTGTTTACAAGGGTACACTTTCTGATGGGAGGGTAGTGGCTGTGAAGCAACTTTCAGTGGCATCTCACCAAGGGAAGAGTCAATTTGCTGCAGAAATTGCTACTATATCTGCAGTGCAACATCGCAATCTAGTGAAATTGTATGGATGCTGTATCGAAGGAAGCCAGCGAATTTTGGTTTATGAATATCTTGAAAACAAGAGCCTTGATCAAGCACTTTTTGGAATAAATGACCTGCACCTTGACTGGCTTACCCGCTTCAATATAATGTTGGGAACAGCAAGAGGACTTGCTTATCTTCATGAGGAGTCAAGCCCAAGGATTGTGCATAGAGATGTCAAAGCCAGTAATATTTTGCTCGACGCAGAACTCTGCCCAAAAATATCAGATTTTGGATTAGCAAAGCTATATGATGATGACAAAACCCATATCAGTACCCGAGTTGCAGGGACAATAGGCTATTTGGCACCAGAGTATGCAATGCGTGGACATCTGACTGAGAAGGCTGATGTTTTCAGTTTTGGGGTTGTTGTTTTGGAGATTCTCAGTGGAAGACCAAATGCTGACAGTGATTTGGATGCTGGAAAGACTTATCTCCTTGAATGGGCTTGGACTCTACATGAAAATAACAAGACTTTGGAGTTGGTGGATCCCAGATTGACAGATTTTGATGATCAAGAAGCCATTAGGTTCATAAAAGTAGCTTTCCAATGCACACAGGGACCGCCAATGACGCGGCCATCTATGTCACGCGTGGTTGGCATGCTTTCTGGAGATATTGAAGTAGGCAGCACTGTCATGTCAAAGCCAAGTTATTTGACGGATTGGGACTATAAAGATGTAACAACAAGTAGCTTTTTGATTGATCGCGATACACCATCAACTGATAGTAAGAGTGAGCTCAACCTTCAGCCTGGCAGCACAACTCGTGCTAGCACCGATATTGACCTTGCGCCATCTCCTGTGGAGGCTAATCGATCAATGGTCACTGACATTATAAGAGAAGGAAGGTAA

Protein Analysis

659

Amino Acids

72.55

Weight (kDa)

5.67

Isoelectric Point (pI)

27.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 77 - 174 2.1e-07 Malectin domain
Malectin PF11721 173 - 231 4.1e-10 Malectin domain
Pkinase PF00069 312 - 574 2.6e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 313 - 575 1.2e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1964
AarI CACCTGC 1 cut(s) 545
Acc36I ACCTGC 3 cut(s) 545, 656, 1209
AccB1I GGYRCC 1 cut(s) 1432
AccII CGCG 3 cut(s) 1702, 1719, 1836
AciI CCGC 5 cut(s) 109, 344, 1222, 1691, 1702
AclWI GGATC 4 cut(s) 475, 525, 1610, 1623
AcoI YGGCCR 1 cut(s) 1703
AcsI RAATTY 3 cut(s) 190, 694, 1137
AcuI CTGAAG 3 cut(s) 48, 167, 1859
AfaI GTAC 4 cut(s) 331, 479, 982, 1402
AfiI CCNNNNNNNGG 3 cut(s) 512, 665, 1570
AflIII ACRYGT 1 cut(s) 1717
AjnI CCWGG 3 cut(s) 166, 402, 1879
AluBI AGCT 7 cut(s) 439, 572, 946, 1372, 1670, 1821, 1867
AluI AGCT 7 cut(s) 439, 572, 946, 1372, 1670, 1821, 1867
Alw21I GWGCWC 1 cut(s) 1869
Alw26I GTCTC 1 cut(s) 465
AlwI GGATC 4 cut(s) 475, 525, 1610, 1623
Ama87I CYCGRG 1 cut(s) 1404
AoxI GGCC 5 cut(s) 304, 503, 676, 964, 1703
ApeKI GCWGC 4 cut(s) 651, 1055, 1755, 1884
ApoI RAATTY 3 cut(s) 190, 694, 1137
Asp700I GAANNNNTTC 2 cut(s) 134, 861
AspLEI GCGC 1 cut(s) 1921
AspS9I GGNCC 7 cut(s) 248, 305, 503, 645, 677, 965, 1688
AsuC2I CCSGG 2 cut(s) 465, 735
AsuHPI GGTGA 3 cut(s) 130, 139, 1025
AsuNHI GCTAGC 1 cut(s) 1898
AvaI CYCGRG 1 cut(s) 1404
AvaII GGWCC 3 cut(s) 248, 645, 1688
BamHI GGATCC 1 cut(s) 1615
BanI GGYRCC 1 cut(s) 1432
BanII GRGCYC 1 cut(s) 1869
BauI CACGAG 1 cut(s) 1893
BbsI GAAGAC 2 cut(s) 864, 1525
Bbv12I GWGCWC 1 cut(s) 1869
BbvI GCAGC 4 cut(s) 638, 1042, 1767, 1896
BccI CCATC 5 cut(s) 263, 986, 1714, 1852, 1930
BceAI ACGGC 1 cut(s) 691
BciT130I CCWGG 3 cut(s) 168, 404, 1881
BclI TGATCA 2 cut(s) 1174, 1639
BcnI CCSGG 2 cut(s) 465, 735
BcoDI GTCTC 1 cut(s) 465
BfaI CTAG 6 cut(s) 579, 866, 872, 947, 1097, 1899
BfmI CTRYAG 2 cut(s) 1056, 1077
BfuAI ACCTGC 3 cut(s) 545, 656, 1209
BisI GCNGC 5 cut(s) 652, 1056, 1703, 1756, 1885
BlsI GCNGC 5 cut(s) 653, 1057, 1704, 1757, 1886
Bme1390I CCNGG 5 cut(s) 168, 404, 465, 735, 1881
Bme18I GGWCC 3 cut(s) 248, 645, 1688
BmeT110I CYCGRG 1 cut(s) 1404
BmgT120I GGNCC 7 cut(s) 248, 305, 503, 645, 677, 965, 1688
BmiI GGNNCC 4 cut(s) 646, 1434, 1617, 1689
BmrFI CCNGG 5 cut(s) 168, 404, 465, 735, 1881
BmrI ACTGGG 2 cut(s) 426, 522
BmsI GCATC 3 cut(s) 1037, 1103, 1534
BmtI GCTAGC 1 cut(s) 1902
BmuI ACTGGG 2 cut(s) 426, 522
BpiI GAAGAC 2 cut(s) 864, 1525
BpmI CTGGAG 2 cut(s) 515, 1758
BpuEI CTTGAG 1 cut(s) 436
BpuMI CCSGG 2 cut(s) 465, 735
Bsa29I ATCGAT 1 cut(s) 1942
BsaBI GATNNNNATC 1 cut(s) 930
BsaJI CCNNGG 5 cut(s) 31, 167, 402, 1036, 1283
Bsc4I CCNNNNNNNGG 3 cut(s) 512, 665, 1570
Bse1I ACTGG 6 cut(s) 52, 327, 421, 517, 1217, 1311
Bse3DI GCAATG 2 cut(s) 358, 1452
Bse8I GATNNNNATC 1 cut(s) 930
BseBI CCWGG 3 cut(s) 168, 404, 1881
BseCI ATCGAT 1 cut(s) 1942
BseDI CCNNGG 5 cut(s) 31, 167, 402, 1036, 1283
BseGI GGATG 2 cut(s) 1118, 1549
BseJI GATNNNNATC 1 cut(s) 930
BseLI CCNNNNNNNGG 3 cut(s) 512, 665, 1570
BseMI GCAATG 2 cut(s) 358, 1452
BseMII CTCAG 4 cut(s) 11, 894, 1455, 1525
BseNI ACTGG 6 cut(s) 52, 327, 421, 517, 1217, 1311
BseRI GAGGAG 2 cut(s) 841, 1286
BseXI GCAGC 4 cut(s) 638, 1042, 1767, 1896
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 1187
Bsh1236I CGCG 3 cut(s) 1702, 1719, 1836
BshFI GGCC 5 cut(s) 306, 505, 678, 966, 1705
BshNI GGYRCC 1 cut(s) 1432
BshVI ATCGAT 1 cut(s) 1942
BsiHKAI GWGCWC 1 cut(s) 1869
BsiHKCI CYCGRG 1 cut(s) 1404
BsiSI CCGG 2 cut(s) 465, 734
BslFI GGGAC 5 cut(s) 433, 658, 1429, 1701, 1808
BslI CCNNNNNNNGG 3 cut(s) 512, 665, 1570
BsmAI GTCTC 1 cut(s) 465
BsmFI GGGAC 5 cut(s) 433, 658, 1429, 1701, 1808
BsnI GGCC 5 cut(s) 306, 505, 678, 966, 1705
BsoBI CYCGRG 1 cut(s) 1404
Bsp1286I GDGCHC 1 cut(s) 1869
Bsp143I GATC 7 cut(s) 467, 517, 1174, 1615, 1639, 1831, 1943
Bsp68I TCGCGA 1 cut(s) 1836
BspACI CCGC 5 cut(s) 109, 344, 1222, 1691, 1702
BspANI GGCC 5 cut(s) 306, 505, 678, 966, 1705
BspCNI CTCAG 4 cut(s) 12, 895, 1456, 1524
BspDI ATCGAT 1 cut(s) 1942
BspFNI CGCG 3 cut(s) 1702, 1719, 1836
BspHI TCATGA 1 cut(s) 1267
BspLI GGNNCC 4 cut(s) 646, 1434, 1617, 1689
BspMAI CTGCAG 2 cut(s) 1060, 1081
BspMI ACCTGC 3 cut(s) 545, 656, 1209
BspOI GCTAGC 1 cut(s) 1902
BspPI GGATC 4 cut(s) 475, 525, 1610, 1623
BspQI GCTCTTC 1 cut(s) 737
BspT107I GGYRCC 1 cut(s) 1432
BsrDI GCAATG 2 cut(s) 358, 1452
BsrI ACTGG 6 cut(s) 52, 327, 421, 517, 1217, 1311
BssECI CCNNGG 5 cut(s) 31, 167, 402, 1036, 1283
BssMI GATC 7 cut(s) 467, 517, 1174, 1615, 1639, 1831, 1943
BssSI CACGAG 1 cut(s) 1893
BssT1I CCWWGG 3 cut(s) 31, 1036, 1283
Bst2BI CACGAG 1 cut(s) 1893
Bst2UI CCWGG 3 cut(s) 168, 404, 1881
Bst4CI ACNGT 4 cut(s) 149, 709, 1535, 1762
Bst6I CTCTTC 3 cut(s) 168, 737, 1037
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstC8I GCNNGC 4 cut(s) 797, 1133, 1730, 1900
BstDEI CTNAG 6 cut(s) 20, 121, 257, 903, 1464, 1511
BstEII GGTNACC 1 cut(s) 50
BstF5I GGATG 2 cut(s) 1118, 1549
BstFNI CGCG 3 cut(s) 1702, 1719, 1836
BstHHI GCGC 1 cut(s) 1921
BstKTI GATC 7 cut(s) 470, 520, 1177, 1618, 1642, 1834, 1946
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 7 cut(s) 467, 517, 1174, 1615, 1639, 1831, 1943
BstMWI GCNNNNNNNGC 3 cut(s) 1064, 1699, 1725
BstNI CCWGG 3 cut(s) 168, 404, 1881
BstNSI RCATGY 1 cut(s) 1732
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 5 cut(s) 166, 402, 463, 733, 1879
BstSFI CTRYAG 2 cut(s) 1056, 1077
BstUI CGCG 3 cut(s) 1702, 1719, 1836
BstV1I GCAGC 4 cut(s) 638, 1042, 1767, 1896
BstV2I GAAGAC 2 cut(s) 864, 1525
BstX2I RGATCY 2 cut(s) 517, 1615
BstYI RGATCY 2 cut(s) 517, 1615
Bsu15I ATCGAT 1 cut(s) 1942
BsuRI GGCC 5 cut(s) 306, 505, 678, 966, 1705
BsuTUI ATCGAT 1 cut(s) 1942
BtgZI GCGATG 1 cut(s) 1073
BtsCI GGATG 2 cut(s) 1118, 1549
BtsI GCAGTG 1 cut(s) 1086
BtsIMutI CAGTG 7 cut(s) 414, 1029, 1086, 1519, 1540, 1758, 1953
BtuMI TCGCGA 1 cut(s) 1836
BveI ACCTGC 3 cut(s) 545, 656, 1209
Cac8I GCNNGC 4 cut(s) 797, 1133, 1730, 1900
CciI TCATGA 1 cut(s) 1267
CfoI GCGC 1 cut(s) 1921
Cfr13I GGNCC 7 cut(s) 248, 305, 503, 645, 677, 965, 1688
ClaI ATCGAT 1 cut(s) 1942
CseI GACGC 2 cut(s) 1337, 1708
Csp6I GTAC 4 cut(s) 330, 478, 981, 1401
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 6 cut(s) 105, 198, 1268, 1586, 1729, 1765
CviQI GTAC 4 cut(s) 330, 478, 981, 1401
DdeI CTNAG 6 cut(s) 20, 121, 257, 903, 1464, 1511
DpnI GATC 7 cut(s) 469, 519, 1176, 1617, 1641, 1833, 1945
DpnII GATC 7 cut(s) 467, 517, 1174, 1615, 1639, 1831, 1943
EaeI YGGCCR 1 cut(s) 1703
Eam1104I CTCTTC 3 cut(s) 168, 737, 1037
EarI CTCTTC 3 cut(s) 168, 737, 1037
Ecl136II GAGCTC 1 cut(s) 1867
Eco130I CCWWGG 3 cut(s) 31, 1036, 1283
Eco24I GRGCYC 1 cut(s) 1869
Eco47I GGWCC 3 cut(s) 248, 645, 1688
Eco53kI GAGCTC 1 cut(s) 1867
Eco57I CTGAAG 3 cut(s) 48, 167, 1859
Eco88I CYCGRG 1 cut(s) 1404
Eco91I GGTNACC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 1867
EcoO109I RGGNCCY 1 cut(s) 645
EcoO65I GGTNACC 1 cut(s) 50
EcoRII CCWGG 3 cut(s) 166, 402, 1879
EcoT14I CCWWGG 3 cut(s) 31, 1036, 1283
EcoT38I GRGCYC 1 cut(s) 1869
ErhI CCWWGG 3 cut(s) 31, 1036, 1283
FaeI CATG 6 cut(s) 108, 201, 1271, 1589, 1732, 1768
FaqI GGGAC 5 cut(s) 433, 658, 1429, 1701, 1808
FatI CATG 6 cut(s) 104, 197, 1267, 1585, 1728, 1764
FauI CCCGC 1 cut(s) 1229
FbaI TGATCA 2 cut(s) 1174, 1639
Fnu4HI GCNGC 5 cut(s) 652, 1056, 1703, 1756, 1885
FokI GGATG 2 cut(s) 1125, 1556
FriOI GRGCYC 1 cut(s) 1869
Fsp4HI GCNGC 5 cut(s) 652, 1056, 1703, 1756, 1885
FspBI CTAG 6 cut(s) 579, 866, 872, 947, 1097, 1899
GlaI GCGC 1 cut(s) 1920
GluI GCNGC 5 cut(s) 652, 1056, 1703, 1756, 1885
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 2 cut(s) 515, 1758
HaeIII GGCC 5 cut(s) 306, 505, 678, 966, 1705
HapII CCGG 2 cut(s) 465, 734
HgaI GACGC 2 cut(s) 1337, 1708
HhaI GCGC 1 cut(s) 1921
Hin1II CATG 6 cut(s) 108, 201, 1271, 1589, 1732, 1768
Hin6I GCGC 1 cut(s) 1919
HinP1I GCGC 1 cut(s) 1919
HinfI GANTC 7 cut(s) 22, 379, 718, 1045, 1274, 1507, 1579
HpaII CCGG 2 cut(s) 465, 734
HphI GGTGA 3 cut(s) 130, 139, 1025
Hpy166II GTNNAC 5 cut(s) 130, 248, 973, 983, 1454
Hpy188I TCNGA 9 cut(s) 21, 67, 186, 569, 604, 904, 991, 1354, 1461
Hpy8I GTNNAC 5 cut(s) 130, 248, 973, 983, 1454
Hpy99I CGWCG 1 cut(s) 1331
HpyCH4III ACNGT 4 cut(s) 149, 709, 1535, 1762
HpyF10VI GCNNNNNNNGC 3 cut(s) 1064, 1699, 1725
HpyF3I CTNAG 6 cut(s) 20, 121, 257, 903, 1464, 1511
Hsp92II CATG 6 cut(s) 108, 201, 1271, 1589, 1732, 1768
HspAI GCGC 1 cut(s) 1919
Ksp22I TGATCA 2 cut(s) 1174, 1639
Kzo9I GATC 7 cut(s) 467, 517, 1174, 1615, 1639, 1831, 1943
LguI GCTCTTC 1 cut(s) 737
Lsp1109I GCAGC 4 cut(s) 638, 1042, 1767, 1896
LweI GCATC 3 cut(s) 1037, 1103, 1534
MaeI CTAG 6 cut(s) 579, 866, 872, 947, 1097, 1899
MaeIII GTNAC 7 cut(s) 50, 322, 412, 427, 1713, 1807, 1951
MalI GATC 7 cut(s) 469, 519, 1176, 1617, 1641, 1833, 1945
MboI GATC 7 cut(s) 467, 517, 1174, 1615, 1639, 1831, 1943
MboII GAAGA 7 cut(s) 155, 754, 869, 935, 1054, 1256, 1530
MflI RGATCY 2 cut(s) 517, 1615
MhlI GDGCHC 1 cut(s) 1869
MluCI AATT 8 cut(s) 175, 190, 607, 694, 1049, 1062, 1103, 1137
MluI ACGCGT 1 cut(s) 1717
MlyI GAGTC 4 cut(s) 31, 1054, 1283, 1573
MroXI GAANNNNTTC 2 cut(s) 134, 861
MseI TTAA 3 cut(s) 81, 594, 930
MslI CAYNNNNRTG 3 cut(s) 109, 1299, 1763
MspI CCGG 2 cut(s) 465, 734
MspR9I CCNGG 5 cut(s) 168, 404, 465, 735, 1881
MvaI CCWGG 3 cut(s) 168, 404, 1881
MvnI CGCG 3 cut(s) 1702, 1719, 1836
MwoI GCNNNNNNNGC 3 cut(s) 1064, 1699, 1725
NciI CCSGG 2 cut(s) 465, 735
NdeII GATC 7 cut(s) 467, 517, 1174, 1615, 1639, 1831, 1943
NheI GCTAGC 1 cut(s) 1898
NlaIII CATG 6 cut(s) 108, 201, 1271, 1589, 1732, 1768
NlaIV GGNNCC 4 cut(s) 646, 1434, 1617, 1689
NmuCI GTSAC 4 cut(s) 412, 427, 1713, 1951
NruI TCGCGA 1 cut(s) 1836
NspI RCATGY 1 cut(s) 1732
PaeI GCATGC 1 cut(s) 1732
PagI TCATGA 1 cut(s) 1267
PaqCI CACCTGC 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 737
PdmI GAANNNNTTC 2 cut(s) 134, 861
PfeI GAWTC 3 cut(s) 379, 718, 1507
PfoI TCCNGGA 2 cut(s) 463, 733
PkrI GCNGC 5 cut(s) 653, 1057, 1704, 1757, 1886
PleI GAGTC 4 cut(s) 30, 1053, 1282, 1573
PpsI GAGTC 4 cut(s) 30, 1053, 1282, 1573
PpuMI RGGWCCY 1 cut(s) 645
PsiI TTATAA 1 cut(s) 1964
Psp124BI GAGCTC 1 cut(s) 1869
Psp5II RGGWCCY 1 cut(s) 645
Psp6I CCWGG 3 cut(s) 166, 402, 1879
PspEI GGTNACC 1 cut(s) 50
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 3 cut(s) 166, 402, 1879
PspN4I GGNNCC 4 cut(s) 646, 1434, 1617, 1689
PspPI GGNCC 7 cut(s) 248, 305, 503, 645, 677, 965, 1688
PspPPI RGGWCCY 1 cut(s) 645
PsrI GAACNNNNNNTAC 2 cut(s) 798, 830
PstI CTGCAG 2 cut(s) 1060, 1081
PsuI RGATCY 2 cut(s) 517, 1615
RruI TCGCGA 1 cut(s) 1836
RsaI GTAC 4 cut(s) 331, 479, 982, 1402
RsaNI GTAC 4 cut(s) 330, 478, 981, 1401
RseI CAYNNNNRTG 3 cut(s) 109, 1299, 1763
SacI GAGCTC 1 cut(s) 1869
SapI GCTCTTC 1 cut(s) 737
SaqAI TTAA 3 cut(s) 81, 594, 930
SatI GCNGC 5 cut(s) 652, 1056, 1703, 1756, 1885
Sau3AI GATC 7 cut(s) 467, 517, 1174, 1615, 1639, 1831, 1943
Sau96I GGNCC 7 cut(s) 248, 305, 503, 645, 677, 965, 1688
SchI GAGTC 4 cut(s) 31, 1054, 1283, 1573
ScrFI CCNGG 5 cut(s) 168, 404, 465, 735, 1881
SduI GDGCHC 1 cut(s) 1869
SfaNI GCATC 3 cut(s) 1037, 1103, 1534
SfcI CTRYAG 2 cut(s) 1056, 1077
SinI GGWCC 3 cut(s) 248, 645, 1688
SmiMI CAYNNNNRTG 3 cut(s) 109, 1299, 1763
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
SphI GCATGC 1 cut(s) 1732
Sse9I AATT 8 cut(s) 175, 190, 607, 694, 1049, 1062, 1103, 1137
SsiI CCGC 5 cut(s) 109, 344, 1222, 1691, 1702
SspI AATATT 1 cut(s) 1318
SspMI CTAG 6 cut(s) 579, 866, 872, 947, 1097, 1899
SstI GAGCTC 1 cut(s) 1869
StyD4I CCNGG 5 cut(s) 166, 402, 463, 733, 1879
StyI CCWWGG 3 cut(s) 31, 1036, 1283
TaaI ACNGT 4 cut(s) 149, 709, 1535, 1762
TaqI TCGA 4 cut(s) 545, 1122, 1326, 1942
TasI AATT 8 cut(s) 175, 190, 607, 694, 1049, 1062, 1103, 1137
TatI WGTACW 1 cut(s) 329
TauI GCSGC 1 cut(s) 1705
TfiI GAWTC 3 cut(s) 379, 718, 1507
Tru1I TTAA 3 cut(s) 81, 594, 930
Tru9I TTAA 3 cut(s) 81, 594, 930
TscAI CASTG 7 cut(s) 421, 1029, 1086, 1519, 1540, 1765, 1960
TseFI GTSAC 4 cut(s) 412, 427, 1713, 1951
TseI GCWGC 4 cut(s) 651, 1055, 1755, 1884
Tsp45I GTSAC 4 cut(s) 412, 427, 1713, 1951
TspDTI ATGAA 8 cut(s) 17, 84, 611, 870, 1164, 1256, 1602, 1648
TspGWI ACGGA 2 cut(s) 171, 1802
TspRI CASTG 7 cut(s) 421, 1029, 1086, 1519, 1540, 1765, 1960
VpaK11BI GGWCC 3 cut(s) 248, 645, 1688
XapI RAATTY 3 cut(s) 190, 694, 1137
XceI RCATGY 1 cut(s) 1732
XmnI GAANNNNTTC 2 cut(s) 134, 861
XspI CTAG 6 cut(s) 579, 866, 872, 947, 1097, 1899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.