Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004501.1

Orthogroup ID

OG0000088

Physical Location & Seq

Genomic Coordinates Forward (+)

49210 .. 58793

Gene Structure 9584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004501.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3075 bp

atgtcactggtggtgcggttttggtatgctgcagcagcctgcagcatattcgtctctgggtttgttgcacaggctcaacccaccacagatccctctgaagtgagagcgctggatgcaatctttcagaaatggaatgtaacagccaatacgaagcaatggaacacaactggtgacccatgcagtgggcttgcggtagatgaagctgatgacaccggttatttctttaacggagataatgattacaatcccttcgtcaaatgcaactgttcttctgttacaaactcaacttgccatattacccaactgaaagcatctactttggacattgttgctccaattccagaagagctctatgctttgactttccttcaatatctgaatgtggaaaaaaattacttgacaggacccatctctgcatcgattggaaatctaaccagcatcacatacttgaactttggacacaacgacttatcaggcgaactaccaaaggaaattgcaaaactcaccaatttgacattcttggctgttgggacactcaacctttctggttctctgccacctgagattgggtatttaacaacaataaaaaagattttcattgataattctggacttagcggtgagattcctccaacatttgctaatctaacaaacttggaaacattttgggcaacagatacaaacctcactggcaggataccggacttcgtaggagattggacaaagcttactaccttgaggtttcagggaaactcctttgaaggttccataccatcttcactgtccagattgactcttttgacagagctgcgaattactgatttaacgattgccaatgaaaactcttctcttggatttatcaagaatatgacgtctctagaagtcttaatgctgaggaataacaatatttctgattcaattccttccaacattggagattaccgaaaattggttcacctggatttgagcttcaacaatttgaatggacaaataccagcctcactatttgatatgaatgtgctcgccatcctgtttcttggaaacaataagttgaatggtagccttcctgagtctaaaagctcgtctcttcttgttgttgatctaccttcagggttgacttgccttcaaaggggctttccttgccaccgtggtcgtccagtttattataacttcatgattaactgcggtggtcctcagactacgttatccaatggaactgtgtatgagacggacacggagccccttggtccagctacatattatgtgactgacacaaacagatggggagttagcaatgtcggtcttaaaacacagtttgtggctgcatcatatttgactgggaccaacaatccaaagtatacaatatccacttcatctccaatcggaaatgcttcagaccctgtgctatttcagagtgcaaggatctctgcttcatcactcagatactatggcttgggtcttgagaatggaaactataccgtgacgcttgaatttgcagaacaagctatcctagatactcctaaaagaaaaagtcttggaagacgtgtgtttgatatatatatccaggatgttcttgttgttaaagattttgatatacgaaaggagacaaataggacatctttgctagctattgaaaaggtttacaaggctcaggtggtttcagagaattaccttgaaatccatttcttctgggctggaaaggggacttgctgcataccagaggagggtacatatggacctcttatttcagccatcagtgctacacctgaattcaaacctaccgtcagcaacaagctgccaagtattaagaagaataggactgggctgattgtgggaattgttgttggtggtggagttttaattctggtggtgatgcttttctatattgttcaaagaagaaagaggcacaacactgatgatgactatgatgaagagctattggggatagatcttggacctctcactttcagtttctctgaactgaaggcagctacaaatgactttagtccagataataagcttggagagggaggatttgggcctgtcttcaaaggtactctaaatgatggaagagtaattgccgtaaaacaattgtctgcatcatcccaccaaggaaagaaccagtttgtgactgagattgccactatatcttctgtgcgacacaataacctagtaaatttgtatggattctgcaccgagggagctaaacggctccttgtctatgagtatctggagaataagagtcttgatcaagcattatttggaaaaagaaccttgcatcttgattggcagacacgttttgatatatgcttgggcgtagctagaggtttaacttatcttcatgaagaatcaaggcttcgaattgtacacagagatgtgaaggcaagtaacattctgcttgactctaatctcattgccaaaatatcagattttggtttggcgaagcattatgatgataaaaagacccacatgagtactcgggttgcaggaacaattgggtatcttgcaccggaatatgctatgcgtggacacctgacagagaagacagatgtgtttgcttatggtgttgtcattctagaaattgtcagcggtaggccaaattctgatccaagtttggaaggcgatatggtttatcttcttgaattggcttggaacttgcatgaaaacaaacgtgaagttgatctagtagactctagattatccgaattcaatgaggaagaagcaagacgaattatcaacataggacttttgtgcactcaatcatcaccaatgctacgaccacctatgtctcgcgtgatcggaatgcttgcaggagatattgaagtgacttctgctatttcaaagcctggttacttgacagactggagatttgatgatgtaactactatcaccagccaaacgaaatttggtgatgggagtactggcaacagtctgggaactgatatgtcaactagaggaactgacttcagcttttacaagtcatcggcaagtacaagcgtgatggagaatgcagggcaattacctttaaatgctactctttccatactcaataatacaaatggtgatggtagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

1024

Amino Acids

112.62

Weight (kDa)

5.51

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca	FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica	MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica	Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis	pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis	RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata	RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora	Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa	Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha	Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana	Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1167
AatII	GACGTC	1 cut(s)	875
AccB7I	CCANNNNNTGG	1 cut(s)	182
AccI	GTMKAC	2 cut(s)	1358, 2688
AccII	CGCG	1 cut(s)	2793
AciI	CCGC	5 cut(s)	16, 191, 618, 1185, 2589
AclWI	GGATC	3 cut(s)	83, 1430, 2600
AcsI	RAATTY	6 cut(s)	1490, 1769, 2176, 2599, 2705, 2903
AcuI	CTGAAG	5 cut(s)	117, 1092, 1377, 2003, 2950
AcyI	GRCGYC	1 cut(s)	872
AfaI	GTAC	6 cut(s)	1729, 2056, 2367, 2476, 2920, 2992
AfeI	AGCGCT	1 cut(s)	108
AfiI	CCNNNNNNNGG	5 cut(s)	182, 566, 949, 1129, 1724
AflIII	ACRYGT	2 cut(s)	1543, 2294
AgeI	ACCGGT	1 cut(s)	212
AjiI	CACGTC	1 cut(s)	1544
AjnI	CCWGG	3 cut(s)	957, 1563, 2845
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AloI	GAACNNNNNNTCC	2 cut(s)	1491, 1523
Alw21I	GWGCWC	3 cut(s)	351, 1023, 2756
Alw26I	GTCTC	6 cut(s)	58, 879, 1089, 1220, 1598, 2793
Alw44I	GTGCAC	1 cut(s)	2752
AlwI	GGATC	3 cut(s)	83, 1430, 2600
AlwNI	CAGNNNCTG	1 cut(s)	1400
Ama87I	CYCGRG	1 cut(s)	2478
Aor51HI	AGCGCT	1 cut(s)	108
AoxI	GGCC	2 cut(s)	2039, 2594
ApaLI	GTGCAC	1 cut(s)	2752
ApeKI	GCWGC	9 cut(s)	29, 32, 35, 42, 808, 1322, 1710, 1795, 1988
ApoI	RAATTY	6 cut(s)	1490, 1769, 2176, 2599, 2705, 2903
ArsI	GACNNNNNNTTYG	4 cut(s)	1767, 1799, 2852, 2884
AsiGI	ACCGGT	1 cut(s)	212
Asp700I	GAANNNNTTC	1 cut(s)	1390
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	7 cut(s)	404, 1190, 1247, 1341, 1736, 1955, 2039
AsuHPI	GGTGA	9 cut(s)	182, 496, 632, 947, 1882, 2757, 2881, 2921, 3074
AsuII	TTCGAA	1 cut(s)	2359
AsuNHI	GCTAGC	1 cut(s)	1624
AvaI	CYCGRG	1 cut(s)	2478
AvaII	GGWCC	6 cut(s)	404, 1190, 1247, 1341, 1736, 1955
BaeGI	GKGCMC	1 cut(s)	2756
BanII	GRGCYC	2 cut(s)	351, 1242
BarI	GAAGNNNNNNTAC	2 cut(s)	753, 785
BbsI	GAAGAC	3 cut(s)	1546, 2038, 2549
Bbv12I	GWGCWC	3 cut(s)	351, 1023, 2756
BbvCI	CCTCAGC	1 cut(s)	893
BbvI	GCAGC	9 cut(s)	16, 44, 47, 54, 795, 1309, 1697, 1782, 2000
BccI	CCATC	9 cut(s)	416, 781, 1034, 1275, 1760, 2060, 2906, 2995, 3059
BceAI	ACGGC	2 cut(s)	2066, 2225
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	3 cut(s)	959, 1565, 2847
BciVI	GTATCC	1 cut(s)	690
BclI	TGATCA	1 cut(s)	2248
BcoDI	GTCTC	6 cut(s)	58, 879, 1089, 1220, 1598, 2793
BfaI	CTAG	9 cut(s)	878, 1511, 1625, 2171, 2322, 2576, 2684, 2694, 2952
BfmI	CTRYAG	2 cut(s)	30, 40
BfoI	RGCGCY	1 cut(s)	110
BfuI	GTATCC	1 cut(s)	690
BglII	AGATCT	1 cut(s)	1948
BisI	GCNGC	9 cut(s)	30, 33, 36, 43, 809, 1323, 1711, 1796, 1989
BlsI	GCNGC	9 cut(s)	31, 34, 37, 44, 810, 1324, 1712, 1797, 1990
BmcAI	AGTACT	2 cut(s)	2476, 2920
Bme1390I	CCNGG	3 cut(s)	959, 1565, 2847
Bme18I	GGWCC	6 cut(s)	404, 1190, 1247, 1341, 1736, 1955
BmeT110I	CYCGRG	1 cut(s)	2478
BmgBI	CACGTC	1 cut(s)	1544
BmgT120I	GGNCC	7 cut(s)	404, 1190, 1247, 1341, 1736, 1955, 2039
BmiI	GGNNCC	5 cut(s)	406, 766, 1239, 1342, 2213
BmrFI	CCNGG	3 cut(s)	959, 1565, 2847
BmrI	ACTGGG	2 cut(s)	1347, 1830
BmsI	GCATC	8 cut(s)	103, 320, 425, 447, 1334, 1863, 2108, 2287
BmtI	GCTAGC	1 cut(s)	1628
BmuI	ACTGGG	2 cut(s)	1347, 1830
BoxI	GACNNNNGTC	1 cut(s)	2004
BpiI	GAAGAC	3 cut(s)	1546, 2038, 2549
BpmI	CTGGAG	2 cut(s)	2252, 2884
Bpu10I	CCTNAGC	2 cut(s)	893, 1650
Bpu14I	TTCGAA	1 cut(s)	2359
BpuEI	CTTGAG	2 cut(s)	757, 1481
Bsa29I	ATCGAT	1 cut(s)	419
BsaBI	GATNNNNATC	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	872
BsaJI	CCNNGG	4 cut(s)	1147, 1243, 2110, 2196
BsaWI	WCCGGW	3 cut(s)	212, 700, 2509
BsaXI	ACNNNNNCTCC	2 cut(s)	1360, 1390
Bsc4I	CCNNNNNNNGG	5 cut(s)	182, 566, 949, 1129, 1724
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	9 cut(s)	12, 172, 694, 1157, 1342, 1825, 2122, 2867, 2926
Bse3DI	GCAATG	3 cut(s)	161, 1300, 2412
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	3 cut(s)	959, 1565, 2847
BseCI	ATCGAT	1 cut(s)	419
BseDI	CCNNGG	4 cut(s)	1147, 1243, 2110, 2196
BseGI	GGATG	4 cut(s)	118, 1026, 1573, 2102
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	5 cut(s)	182, 566, 949, 1129, 1724
BseMI	GCAATG	3 cut(s)	161, 1300, 2412
BseMII	CTCAG	7 cut(s)	552, 884, 1059, 1208, 1453, 1664, 2124
BseNI	ACTGG	9 cut(s)	12, 172, 694, 1157, 1342, 1825, 2122, 2867, 2926
BseRI	GAGGAG	1 cut(s)	1736
BseSI	GKGCMC	1 cut(s)	2756
BseXI	GCAGC	9 cut(s)	16, 44, 47, 54, 795, 1309, 1697, 1782, 2000
BsgI	GTGCAG	1 cut(s)	2176
Bsh1236I	CGCG	1 cut(s)	2793
BshFI	GGCC	2 cut(s)	2041, 2596
BshTI	ACCGGT	1 cut(s)	212
BshVI	ATCGAT	1 cut(s)	419
BsiHKAI	GWGCWC	3 cut(s)	351, 1023, 2756
BsiHKCI	CYCGRG	1 cut(s)	2478
BsiSI	CCGG	3 cut(s)	213, 701, 2510
BslFI	GGGAC	3 cut(s)	544, 1354, 1717
BslI	CCNNNNNNNGG	5 cut(s)	182, 566, 949, 1129, 1724
BsmAI	GTCTC	6 cut(s)	58, 879, 1089, 1220, 1598, 2793
BsmBI	CGTCTC	4 cut(s)	58, 879, 1089, 1220
BsmFI	GGGAC	3 cut(s)	544, 1354, 1717
BsmI	GAATGC	2 cut(s)	2808, 3013
BsnI	GGCC	2 cut(s)	2041, 2596
BsoBI	CYCGRG	1 cut(s)	2478
Bsp119I	TTCGAA	1 cut(s)	2359
Bsp1286I	GDGCHC	4 cut(s)	351, 1023, 1242, 2756
Bsp1407I	TGTACA	1 cut(s)	2365
Bsp143I	GATC	8 cut(s)	88, 1099, 1422, 1948, 2248, 2605, 2680, 2796
BspACI	CCGC	5 cut(s)	16, 191, 618, 1185, 2589
BspANI	GGCC	2 cut(s)	2041, 2596
BspCNI	CTCAG	7 cut(s)	553, 885, 1060, 1207, 1452, 1663, 2125
BspDI	ATCGAT	1 cut(s)	419
BspFNI	CGCG	1 cut(s)	2793
BspHI	TCATGA	2 cut(s)	1173, 2341
BspLI	GGNNCC	5 cut(s)	406, 766, 1239, 1342, 2213
BspMAI	CTGCAG	2 cut(s)	34, 44
BspOI	GCTAGC	1 cut(s)	1628
BspPI	GGATC	3 cut(s)	83, 1430, 2600
BspQI	GCTCTTC	2 cut(s)	339, 1926
BspT104I	TTCGAA	1 cut(s)	2359
BsrDI	GCAATG	3 cut(s)	161, 1300, 2412
BsrFI	RCCGGY	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	2365
BsrI	ACTGG	9 cut(s)	12, 172, 694, 1157, 1342, 1825, 2122, 2867, 2926
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	4 cut(s)	1147, 1243, 2110, 2196
BssMI	GATC	8 cut(s)	88, 1099, 1422, 1948, 2248, 2605, 2680, 2796
BssNAI	GTATAC	1 cut(s)	1359
BssNI	GRCGYC	1 cut(s)	872
BssT1I	CCWWGG	2 cut(s)	1243, 2110
Bst1107I	GTATAC	1 cut(s)	1359
Bst2UI	CCWGG	3 cut(s)	959, 1565, 2847
Bst4CI	ACNGT	8 cut(s)	266, 783, 1148, 1219, 1314, 1480, 1783, 2930
Bst6I	CTCTTC	5 cut(s)	339, 850, 1092, 1926, 2065
BstACI	GRCGYC	1 cut(s)	872
BstAUI	TGTACA	1 cut(s)	2365
BstBI	TTCGAA	1 cut(s)	2359
BstC8I	GCNNGC	5 cut(s)	40, 189, 1023, 1626, 2808
BstDEI	CTNAG	8 cut(s)	561, 614, 893, 1068, 1194, 1439, 1650, 2133
BstDSI	CCRYGG	1 cut(s)	1147
BstEII	GGTNACC	1 cut(s)	170
BstF5I	GGATG	4 cut(s)	118, 1026, 1573, 2102
BstFNI	CGCG	1 cut(s)	2793
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	8 cut(s)	91, 1102, 1425, 1951, 2251, 2608, 2683, 2799
BstMAI	GTCTC	6 cut(s)	58, 879, 1089, 1220, 1598, 2793
BstMBI	GATC	8 cut(s)	88, 1099, 1422, 1948, 2248, 2605, 2680, 2796
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 113, 1140, 1502, 1757
BstNI	CCWGG	3 cut(s)	959, 1565, 2847
BstPAI	GACNNNNGTC	1 cut(s)	2004
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	3 cut(s)	957, 1563, 2845
BstSFI	CTRYAG	2 cut(s)	30, 40
BstSLI	GKGCMC	1 cut(s)	2756
BstUI	CGCG	1 cut(s)	2793
BstV1I	GCAGC	9 cut(s)	16, 44, 47, 54, 795, 1309, 1697, 1782, 2000
BstV2I	GAAGAC	3 cut(s)	1546, 2038, 2549
BstX2I	RGATCY	3 cut(s)	88, 1422, 1948
BstYI	RGATCY	3 cut(s)	88, 1422, 1948
BstZ17I	GTATAC	1 cut(s)	1359
Bsu15I	ATCGAT	1 cut(s)	419
BsuI	GTATCC	1 cut(s)	690
BsuRI	GGCC	2 cut(s)	2041, 2596
BsuTUI	ATCGAT	1 cut(s)	419
BtgI	CCRYGG	1 cut(s)	1147
BtrI	CACGTC	1 cut(s)	1544
BtsCI	GGATG	4 cut(s)	118, 1026, 1573, 2102
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	6 cut(s)	5, 187, 687, 779, 1762, 1911
Cac8I	GCNNGC	5 cut(s)	40, 189, 1023, 1626, 2808
CaiI	CAGNNNCTG	1 cut(s)	1400
CciI	TCATGA	2 cut(s)	1173, 2341
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	7 cut(s)	404, 1190, 1247, 1341, 1736, 1955, 2039
ClaI	ATCGAT	1 cut(s)	419
CseI	GACGC	1 cut(s)	1492
Csp6I	GTAC	6 cut(s)	1728, 2055, 2366, 2475, 2919, 2991
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	5 cut(s)	177, 1174, 2342, 2470, 2660
CviQI	GTAC	6 cut(s)	1728, 2055, 2366, 2475, 2919, 2991
DdeI	CTNAG	8 cut(s)	561, 614, 893, 1068, 1194, 1439, 1650, 2133
DpnI	GATC	8 cut(s)	90, 1101, 1424, 1950, 2250, 2607, 2682, 2798
DpnII	GATC	8 cut(s)	88, 1099, 1422, 1948, 2248, 2605, 2680, 2796
DraI	TTTAAA	1 cut(s)	3027
Eam1104I	CTCTTC	5 cut(s)	339, 850, 1092, 1926, 2065
EarI	CTCTTC	5 cut(s)	339, 850, 1092, 1926, 2065
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	2 cut(s)	1243, 2110
Eco24I	GRGCYC	2 cut(s)	351, 1242
Eco47I	GGWCC	6 cut(s)	404, 1190, 1247, 1341, 1736, 1955
Eco47III	AGCGCT	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	5 cut(s)	117, 1092, 1377, 2003, 2950
Eco88I	CYCGRG	1 cut(s)	2478
Eco91I	GGTNACC	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	170
EcoRI	GAATTC	2 cut(s)	1769, 2705
EcoRII	CCWGG	3 cut(s)	957, 1563, 2845
EcoT14I	CCWWGG	2 cut(s)	1243, 2110
EcoT38I	GRGCYC	2 cut(s)	351, 1242
ErhI	CCWWGG	2 cut(s)	1243, 2110
Esp3I	CGTCTC	4 cut(s)	58, 879, 1089, 1220
FaeI	CATG	5 cut(s)	180, 1177, 2345, 2473, 2663
FaqI	GGGAC	3 cut(s)	544, 1354, 1717
FatI	CATG	5 cut(s)	176, 1173, 2341, 2469, 2659
FauNDI	CATATG	1 cut(s)	1732
FbaI	TGATCA	1 cut(s)	2248
FblI	GTMKAC	2 cut(s)	1358, 2688
Fnu4HI	GCNGC	9 cut(s)	30, 33, 36, 43, 809, 1323, 1711, 1796, 1989
FokI	GGATG	4 cut(s)	125, 1013, 1580, 2089
FriOI	GRGCYC	2 cut(s)	351, 1242
Fsp4HI	GCNGC	9 cut(s)	30, 33, 36, 43, 809, 1323, 1711, 1796, 1989
FspBI	CTAG	9 cut(s)	878, 1511, 1625, 2171, 2322, 2576, 2684, 2694, 2952
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	9 cut(s)	30, 33, 36, 43, 809, 1323, 1711, 1796, 1989
GsuI	CTGGAG	2 cut(s)	2252, 2884
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	2041, 2596
HapII	CCGG	3 cut(s)	213, 701, 2510
HgaI	GACGC	1 cut(s)	1492
HhaI	GCGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	872
Hin1II	CATG	5 cut(s)	180, 1177, 2345, 2473, 2663
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	2 cut(s)	1116, 2949
HindII	GTYRAC	2 cut(s)	1116, 2949
HindIII	AAGCTT	2 cut(s)	725, 2018
HinfI	GANTC	9 cut(s)	625, 793, 914, 1070, 2187, 2242, 2348, 2402, 2690
HpaII	CCGG	3 cut(s)	213, 701, 2510
HphI	GGTGA	9 cut(s)	182, 496, 632, 947, 1882, 2757, 2881, 2921, 3074
Hpy166II	GTNNAC	9 cut(s)	955, 1116, 1359, 1642, 2368, 2528, 2689, 2754, 2949
Hpy8I	GTNNAC	9 cut(s)	955, 1116, 1359, 1642, 2368, 2528, 2689, 2754, 2949
HpyCH4III	ACNGT	8 cut(s)	266, 783, 1148, 1219, 1314, 1480, 1783, 2930
HpyCH4IV	ACGT	5 cut(s)	872, 1202, 1543, 2296, 2671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 113, 1140, 1502, 1757
HpyF3I	CTNAG	8 cut(s)	561, 614, 893, 1068, 1194, 1439, 1650, 2133
HpySE526I	ACGT	5 cut(s)	872, 1202, 1543, 2296, 2671
Hsp92I	GRCGYC	1 cut(s)	872
Hsp92II	CATG	5 cut(s)	180, 1177, 2345, 2473, 2663
HspAI	GCGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	2248
Kzo9I	GATC	8 cut(s)	88, 1099, 1422, 1948, 2248, 2605, 2680, 2796
LguI	GCTCTTC	2 cut(s)	339, 1926
LmnI	GCTCC	4 cut(s)	337, 1237, 2201, 2217
Lsp1109I	GCAGC	9 cut(s)	16, 44, 47, 54, 795, 1309, 1697, 1782, 2000
LweI	GCATC	8 cut(s)	103, 320, 425, 447, 1334, 1863, 2108, 2287
MaeI	CTAG	9 cut(s)	878, 1511, 1625, 2171, 2322, 2576, 2684, 2694, 2952
MaeII	ACGT	5 cut(s)	872, 1202, 1543, 2296, 2671
MalI	GATC	8 cut(s)	90, 1101, 1424, 1950, 2250, 2607, 2682, 2798
MboI	GATC	8 cut(s)	88, 1099, 1422, 1948, 2248, 2605, 2680, 2796
MfeI	CAATTG	2 cut(s)	2090, 2493
MflI	RGATCY	3 cut(s)	88, 1422, 1948
MhlI	GDGCHC	4 cut(s)	351, 1023, 1242, 2756
MlyI	GAGTC	5 cut(s)	787, 1079, 2251, 2396, 2684
MmeI	TCCRAC	2 cut(s)	656, 951
MroXI	GAANNNNTTC	1 cut(s)	1390
MslI	CAYNNNNRTG	2 cut(s)	2373, 2451
MspA1I	CMGCKG	1 cut(s)	2589
MspI	CCGG	3 cut(s)	213, 701, 2510
MspR9I	CCNGG	3 cut(s)	959, 1565, 2847
MunI	CAATTG	2 cut(s)	2090, 2493
Mva1269I	GAATGC	2 cut(s)	2808, 3013
MvaI	CCWGG	3 cut(s)	959, 1565, 2847
MvnI	CGCG	1 cut(s)	2793
MwoI	GCNNNNNNNGC	5 cut(s)	35, 113, 1140, 1502, 1757
NdeI	CATATG	1 cut(s)	1732
NdeII	GATC	8 cut(s)	88, 1099, 1422, 1948, 2248, 2605, 2680, 2796
NheI	GCTAGC	1 cut(s)	1624
NlaIII	CATG	5 cut(s)	180, 1177, 2345, 2473, 2663
NlaIV	GGNNCC	5 cut(s)	406, 766, 1239, 1342, 2213
NmuCI	GTSAC	6 cut(s)	3, 170, 1264, 1480, 2128, 2824
NspV	TTCGAA	1 cut(s)	2359
PagI	TCATGA	2 cut(s)	1173, 2341
PciSI	GCTCTTC	2 cut(s)	339, 1926
PctI	GAATGC	2 cut(s)	2808, 3013
PdmI	GAANNNNTTC	1 cut(s)	1390
PfeI	GAWTC	4 cut(s)	625, 914, 2187, 2348
PflMI	CCANNNNNTGG	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	1563
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	9 cut(s)	31, 34, 37, 44, 810, 1324, 1712, 1797, 1990
PleI	GAGTC	5 cut(s)	787, 1078, 2250, 2396, 2684
PpsI	GAGTC	5 cut(s)	787, 1078, 2250, 2396, 2684
PpuMI	RGGWCCY	1 cut(s)	404
PshAI	GACNNNNGTC	1 cut(s)	2004
PsiI	TTATAA	1 cut(s)	1167
Psp124BI	GAGCTC	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	3 cut(s)	957, 1563, 2845
PspEI	GGTNACC	1 cut(s)	170
PspGI	CCWGG	3 cut(s)	957, 1563, 2845
PspN4I	GGNNCC	5 cut(s)	406, 766, 1239, 1342, 2213
PspPI	GGNCC	7 cut(s)	404, 1190, 1247, 1341, 1736, 1955, 2039
PspPPI	RGGWCCY	1 cut(s)	404
PstI	CTGCAG	2 cut(s)	34, 44
PstNI	CAGNNNCTG	1 cut(s)	1400
PsuI	RGATCY	3 cut(s)	88, 1422, 1948
RsaI	GTAC	6 cut(s)	1729, 2056, 2367, 2476, 2920, 2992
RsaNI	GTAC	6 cut(s)	1728, 2055, 2366, 2475, 2919, 2991
RseI	CAYNNNNRTG	2 cut(s)	2373, 2451
SacI	GAGCTC	1 cut(s)	351
SapI	GCTCTTC	2 cut(s)	339, 1926
SatI	GCNGC	9 cut(s)	30, 33, 36, 43, 809, 1323, 1711, 1796, 1989
Sau3AI	GATC	8 cut(s)	88, 1099, 1422, 1948, 2248, 2605, 2680, 2796
Sau96I	GGNCC	7 cut(s)	404, 1190, 1247, 1341, 1736, 1955, 2039
ScaI	AGTACT	2 cut(s)	2476, 2920
SchI	GAGTC	5 cut(s)	787, 1079, 2251, 2396, 2684
ScrFI	CCNGG	3 cut(s)	959, 1565, 2847
SduI	GDGCHC	4 cut(s)	351, 1023, 1242, 2756
SfaNI	GCATC	8 cut(s)	103, 320, 425, 447, 1334, 1863, 2108, 2287
SfcI	CTRYAG	2 cut(s)	30, 40
SfuI	TTCGAA	1 cut(s)	2359
SinI	GGWCC	6 cut(s)	404, 1190, 1247, 1341, 1736, 1955
SmiMI	CAYNNNNRTG	2 cut(s)	2373, 2451
SmlI	CTYRAG	2 cut(s)	736, 1460
SmoI	CTYRAG	2 cut(s)	736, 1460
SsiI	CCGC	5 cut(s)	16, 191, 618, 1185, 2589
SspI	AATATT	1 cut(s)	907
SspMI	CTAG	9 cut(s)	878, 1511, 1625, 2171, 2322, 2576, 2684, 2694, 2952
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	3 cut(s)	957, 1563, 2845
StyI	CCWWGG	2 cut(s)	1243, 2110
TaaI	ACNGT	8 cut(s)	266, 783, 1148, 1219, 1314, 1480, 1783, 2930
TaiI	ACGT	5 cut(s)	875, 1205, 1546, 2299, 2674
TaqI	TCGA	2 cut(s)	419, 2359
TaqII	GACCGA	1 cut(s)	1289
TatI	WGTACW	4 cut(s)	2365, 2474, 2918, 2990
TfiI	GAWTC	4 cut(s)	625, 914, 2187, 2348
TscAI	CASTG	6 cut(s)	12, 187, 694, 786, 1762, 1918
TseFI	GTSAC	6 cut(s)	3, 170, 1264, 1480, 2128, 2824
TseI	GCWGC	9 cut(s)	29, 32, 35, 42, 808, 1322, 1710, 1795, 1988
Tsp45I	GTSAC	6 cut(s)	3, 170, 1264, 1480, 2128, 2824
TspGWI	ACGGA	3 cut(s)	243, 1244, 1250
TspRI	CASTG	6 cut(s)	12, 187, 694, 786, 1762, 1918
Van91I	CCANNNNNTGG	1 cut(s)	182
VneI	GTGCAC	1 cut(s)	2752
VpaK11BI	GGWCC	6 cut(s)	404, 1190, 1247, 1341, 1736, 1955
XapI	RAATTY	6 cut(s)	1490, 1769, 2176, 2599, 2705, 2903
XbaI	TCTAGA	3 cut(s)	877, 2575, 2693
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2903
XmiI	GTMKAC	2 cut(s)	1358, 2688
XmnI	GAANNNNTTC	1 cut(s)	1390
XspI	CTAG	9 cut(s)	878, 1511, 1625, 2171, 2322, 2576, 2684, 2694, 2952
ZraI	GACGTC	1 cut(s)	873
ZrmI	AGTACT	2 cut(s)	2476, 2920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.