Rh5AG483600
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
82720923 .. 82721651
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG483600.1

Sequence Viewer

Length: 555 bp
ATGCGTGGACACCTGACAGAGAAGACCGATGTGTTTGCTTATGGTGTTGTCATTCTAGAAATTGTCAGCGGTAGGCCAAATTCTGATCCAAGTTTGCAAGGCGATATGGTTTATCTTCTTGAATTGGCTTGGAACTTGCATGAAAACAAACGTGAAGTTGATCTAGTAGACTCTAGATTATCCGAATTCAATGAGGAAGAAGCAAGACGAATTATCAACATAGGACTTTTGTGCACTCAATCATCACCAATGCTACGACCACCTATGTCTCGCGTGATCGGAATGCTTGCAGGAGATATTGAAGTGACTTCTGCTATTTCAAAGCCTGGTTACTTGACGGACTGGAAATTTGATGATGTAACTACTATCACCAGCCAAACGAAATTTGGTGATGGGAGTACTGGCAACAGTCTAGGAACTGATTTGTCAACTATAGGAACTGACTTCAGCTTTTACAAGTCATCAGCAAGTACAAGCGTGATGGAGAATGCAGGGCAATTACCTTCAAATGCTACTCTTTCCATACTCAATAATACAAATGATGATGGTAGATGA

Protein Analysis

184

Amino Acids

20.1

Weight (kDa)

4.57

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 168
AccII CGCG 1 cut(s) 273
AciI CCGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 4 cut(s) 79, 185, 347, 383
AcuI CTGAAG 1 cut(s) 430
AfaI GTAC 2 cut(s) 400, 472
AgsI TTSAA 5 cut(s) 122, 190, 302, 321, 507
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 1 cut(s) 450
AluI AGCT 1 cut(s) 450
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 273
Alw44I GTGCAC 1 cut(s) 232
AlwI GGATC 1 cut(s) 80
AoxI GGCC 1 cut(s) 74
ApaLI GTGCAC 1 cut(s) 232
ApoI RAATTY 4 cut(s) 79, 185, 347, 383
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AsuHPI GGTGA 3 cut(s) 237, 361, 401
BaeGI GKGCMC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 236
BccI CCATC 3 cut(s) 386, 475, 539
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 4 cut(s) 56, 164, 174, 413
BfmI CTRYAG 1 cut(s) 432
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 347, 406
BseBI CCWGG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 347, 406
BseSI GKGCMC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 273
BsmI GAATGC 2 cut(s) 288, 493
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 3 cut(s) 85, 160, 276
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 76
BspFNI CGCG 1 cut(s) 273
BspPI GGATC 1 cut(s) 80
BsrI ACTGG 2 cut(s) 347, 406
BssMI GATC 3 cut(s) 85, 160, 276
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 288
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 3 cut(s) 88, 163, 279
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 3 cut(s) 85, 160, 276
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstSFI CTRYAG 1 cut(s) 432
BstSLI GKGCMC 1 cut(s) 236
BstUI CGCG 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 29
BsuRI GGCC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 288
Csp6I GTAC 2 cut(s) 399, 471
CviAII CATG 1 cut(s) 140
CviJI RGCY 5 cut(s) 76, 128, 325, 375, 450
CviKI_1 RGCY 5 cut(s) 76, 128, 325, 375, 450
CviQI GTAC 2 cut(s) 399, 471
DpnI GATC 3 cut(s) 87, 162, 278
DpnII GATC 3 cut(s) 85, 160, 276
Eco57I CTGAAG 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 325
FaeI CATG 1 cut(s) 143
FaiI YATR 7 cut(s) 42, 107, 141, 221, 266, 434, 524
FatI CATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 168
FspBI CTAG 4 cut(s) 56, 164, 174, 413
HaeIII GGCC 1 cut(s) 76
Hin1II CATG 1 cut(s) 143
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HinfI GANTC 1 cut(s) 170
HphI GGTGA 3 cut(s) 237, 361, 401
Hpy166II GTNNAC 4 cut(s) 8, 169, 234, 429
Hpy188I TCNGA 3 cut(s) 85, 184, 281
Hpy188III TCNNGA 3 cut(s) 56, 119, 174
Hpy8I GTNNAC 4 cut(s) 8, 169, 234, 429
HpyAV CCTTC 1 cut(s) 513
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 5 cut(s) 97, 139, 234, 290, 491
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 3 cut(s) 85, 160, 276
LpnPI CCDG 8 cut(s) 26, 276, 312, 328, 339, 385, 387, 477
MaeI CTAG 4 cut(s) 56, 164, 174, 413
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 3 cut(s) 304, 329, 358
MalI GATC 3 cut(s) 87, 162, 278
MboI GATC 3 cut(s) 85, 160, 276
MboII GAAGA 3 cut(s) 34, 107, 209
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 8 cut(s) 60, 79, 122, 185, 210, 347, 383, 497
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 1 cut(s) 187
MspA1I CMGCKG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 327
Mva1269I GAATGC 2 cut(s) 288, 493
MvaI CCWGG 1 cut(s) 327
MvnI CGCG 1 cut(s) 273
NdeII GATC 3 cut(s) 85, 160, 276
NlaIII CATG 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 304
PctI GAATGC 2 cut(s) 288, 493
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
RsaI GTAC 2 cut(s) 400, 472
RsaNI GTAC 2 cut(s) 399, 471
Sau3AI GATC 3 cut(s) 85, 160, 276
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 236
SetI ASST 5 cut(s) 15, 154, 265, 452, 505
SfcI CTRYAG 1 cut(s) 432
Sse9I AATT 8 cut(s) 60, 79, 122, 185, 210, 347, 383, 497
SsiI CCGC 1 cut(s) 69
SspMI CTAG 4 cut(s) 56, 164, 174, 413
StyD4I CCNGG 1 cut(s) 325
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 1 cut(s) 154
TaqII GACCGA 1 cut(s) 41
TasI AATT 8 cut(s) 60, 79, 122, 185, 210, 347, 383, 497
TatI WGTACW 2 cut(s) 398, 470
TseFI GTSAC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 353
VneI GTGCAC 1 cut(s) 232
XapI RAATTY 4 cut(s) 79, 185, 347, 383
XbaI TCTAGA 2 cut(s) 55, 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 4 cut(s) 56, 164, 174, 413
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.