Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000088

Physical Location & Seq

Genomic Coordinates Reverse (-)

80935529 .. 80942997

Gene Structure 7469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00058950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3123 bp

ATGAAGCATTCTTCTCTTTCATTACTATGCTTCTGCCTAGGCTATCTGGGTAGTTTCTGGTTTCACGTTTCCGTGGCTCAAAATGCTACTAATGCTACTACGGACCCATCTGAAGTGTCGGCTTTGAACTCAATCTTCCAACAGTGGGGAGCACACTCAGCACAGTCGGTGGCGCTGTGGAATATCAGTGGAGAGCCATGCAGTGGATCAGCCATCGATGGAACTGAATTTGAGAGCACTCCTAATAACCCTGCCATTATATGTGATTGTAACTTTGACAATAGTACCACCTGCCATATTACCAAACTGAGAGTTTATGCTCTAGACAAAACAGGAGGGTTTCCAGAAGAGCTTCTGGCTTTGAAATATCTGAACTTTTTGAAAATAGATCAGAACTTTTTCACAGGCCCCTTACCCGCATGGATTGGCAATATGTCTGCATTGACGCTGTTGTCAATTGCCCATAATGCATTCTCTGGGCCGATCCCCAAGGAACTTGGAAATTTGAAGGACCTAAAACTTCTGTCCTTTGGATTAAATAATTTCTCTGGAACACTCCCTCCAGAACTTGGTAATCTAATCAAGCTCCAGGAACTTTACATAAACAGCTGTGGACTTACTGGTGAAATTCCTTCAACATTTTCTAACCTTCGTAACATGCAAGTCCTTTGGGCATCAGACACTCCTTTCTCCGGAAAGATACCTGATTTCATTGGGAATTGGACGAAGCTAAACTCACTGAGACTTCAAGGAAACTCTTTTGAAGGCCCAATACCAACCAATTTTTCCCAGTTGACCTCATTGAGTTCTCTGCGAATCAGTGATATATACAATGGGAGCTCCTCTCTTGGTTTCATAAAAAATTTGAAGAACTTGACTAATCTAGTTCTACGAAATGCATTGATTACTGGTAGCCTCCCTTCTGATATTGCAGAATATCCAAGTTTACAGATACTGGATTTGAGTTTCAACAATTTGACAGGCCAACTGCCAAATGCTTTGTTCAACATGAGTTCTCTTACATACTTATTTCTTGGGAACAATAGTCTGTCTGGATCACTTCCTAACCAAAAGACCAGTACACTTCAGAACGTAGACTTGTCTTACAACTATTTGTCAGGGAGTCTTCCTCCGTGGGTAACCTCAACAGAGCAACTGAACTTGGTGGTCAACAACTTCACTTTTAACGAAAGTTCAGAAATAACGTTTCCCGGATTGAATTGCCTTCAAAGAAATTTTCCTTGCAATAGATATCCCCCGCGCTATGCAAACTTCTCAATCAACTGTGGAGGACCAGACATGAGAGGAAGTGATGGCATATTATATGAGGCAGAAAACTCAACTCTTGGCCCAGCAACATATAATGTAACCAGTACAGAGAAATGGGCTGTTAGCAATGCGGGTTTGTTTGCTGAGAGGAAGAATCCAAGCTATTTGCTAAACTCCTTGGCACAGGTTACTGGGTCGGATGTGACCCCAGAGCTTTTCCAGACTGCAAGATTATCTGCAGGATCACTGAGATACTACGGCTTGGGTCTCCAGAATGGGCCTTATACAGTAAAATTACAATTTGCAGAAATGGTTTTTGATGATCGTGCATCACAAACTTGGAAAAGTTTAGGAAGGCGAGTATTTGATATCTATATTCAGGGGCATCTAGTAGTGAAGGACTTTGACATATCCAAGGAGGCAGGTGGTGTTTTAAGAGTAGCAGCGAAAAACTTCAATGTAAACGTGTCGGACAATTATGTTGAAATTCATTTGTTCTGGGCTGGTAAGGGGACCTGCTGTATACCTAATCAAGGTGATTATGGTCCACTAATATCAACGGTCAATGCTGTTCCAGATTTTAAACCAACTGTTTCTGGGATTCCACCAACTACTCCAGGAAAGAAGAGCATGGCAGGGGTGATTGTTGGCGTTGCAGTCTCTGTCGGAGTTGTGAGCTTGCTATTAATATTTGCAGTTTTATATTTGAGGAGAAAAATACCAGACAAAGATGACGATGAAGAACTTCAAGGATTAGACCCGCGACCAAATACATTCAGTTATAGTGAGTTAAAAGCTGCAACAGGAGATTTTAATCTTTCAAATAAACTAGGGGAAGGAGGATATGGCACCGTTTACAAGGGCATACTCTCTGAAGCAAGGTTAGTGGCTGTGAAGCAACTTTCAGTAGCATCTCACCAAGGGAAGAGTCAATTTGCAGCAGAAATTGCTGCCATATCTGCAGTGCAACATCGCAATCTAGTGAAACTGTTTGGATGCTGTGTCGAAGGAAACCAGCGAATTTTGGTTTATGAATATCTTGAAAACAAGAGCCTTGATCAGGCACTTTTTGGAAACAACTTGCATCTTGACTGGCATACCAGATTCAATATCTTGTTGGGAACAGCAAGGGGACTTGCCTATCTTCATGAGGAGTCGAGGCCAAGGATAGTACATAGAGATGTCAAAGCCAGTAATATTTTGCTTGATGCAGACCTCTCCCCAAAAATATCAGATTTTGGACTGGCAAAGCTTTATGATGATGAGAAAACCCACATCAGCACCCGAGTTGCAGGGACAATAGGCTATTTGGCACCGGAGTATGCAATGCGAGGACATCTGACTGAAAAAGCTGATGTATTCGGCTTTGGAGTTGTCATTTTGGAGACTCTTAGTGGGAGACCAAACACTGACAATGACTTGGATGCCGGAGAGATTTATCTCCTTGATTGGGCATGGACTCTACATGAAAAAAATGAGCGTTTGGGGCTTGTGGATCCGAGACTGACCGACTTTGATGAAGAAGAAGCAAATAGATTGATAAGATTAGCTTTCCTGTGTACTCAGGCATCCCCATTGATGCGGCCATCTATGTCTCGTGTGGTGGCCATGCTTGCTGGAGATATTGAAGTAGGTAATGTTATGGCAAAGCCAAGTTATTTGACAGACTGGGATTTCAAAGATGTAACAGGAAGCTTCTTGATTGATGGTGATACCCCCTCAACTGGGATGACTCACCCCAGCAATCAGTCTACTGGCATCACAACCGGTGCTAACACCGGAATTGACCTGATGCAGTCTCCTGTGAATCCTAATCATTCATTGCTCACTGGGATTATAGGAGAAGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

1040

Amino Acids

113.6

Weight (kDa)

5.45

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	94 - 202	1.8e-07	Leucine-rich repeat region
LRR_14	PF23598	184 - 273	6.2e-08	Leucine-rich repeat region
LRR_14	PF23598	264 - 356	7.9e-06	Leucine-rich repeat region
LRR_8	PF13855	291 - 350	4.5e-06	Leucine rich repeat
Malectin	PF11721	425 - 609	1.1e-41	Malectin domain
Pkinase	PF00069	695 - 899	2.2e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	695 - 960	2.6e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca	FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica	MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica	Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis	pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis	RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata	RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora	Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa	Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha	Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana	Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	299, 1682
AasI	GACNNNNNNGTC	1 cut(s)	451
Acc36I	ACCTGC	3 cut(s)	299, 1682, 1793
AccB1I	GGYRCC	2 cut(s)	2117, 2581
AccB7I	CCANNNNNTGG	2 cut(s)	203, 569
AccI	GTMKAC	3 cut(s)	1095, 1792, 3020
AccII	CGCG	2 cut(s)	1261, 2032
AccIII	TCCGGA	1 cut(s)	692
AciI	CCGC	5 cut(s)	417, 1259, 1400, 2030, 2851
AclI	AACGTT	1 cut(s)	1205
AclWI	GGATC	6 cut(s)	214, 478, 1063, 1519, 2759, 2772
AcoI	YGGCCR	2 cut(s)	2852, 2874
AcsI	RAATTY	7 cut(s)	227, 502, 627, 862, 1234, 1755, 2289
AcuI	CTGAAG	3 cut(s)	132, 1070, 2163
AfaI	GTAC	5 cut(s)	286, 1081, 1375, 2442, 2830
AfiI	CCNNNNNNNGG	9 cut(s)	145, 203, 569, 692, 1802, 2329, 2719, 2993, 2994
AflIII	ACRYGT	1 cut(s)	1734
AgeI	ACCGGT	1 cut(s)	3035
AjnI	CCWGG	2 cut(s)	588, 1885
AjuI	GAANNNNNNNTTGG	2 cut(s)	769, 801
AloI	GAACNNNNNNTCC	2 cut(s)	544, 576
Alw21I	GWGCWC	3 cut(s)	154, 239, 842
Alw26I	GTCTC	8 cut(s)	736, 1541, 1933, 2648, 2662, 2764, 2868, 3072
AlwI	GGATC	6 cut(s)	214, 478, 1063, 1519, 2759, 2772
AlwNI	CAGNNNCTG	2 cut(s)	955, 1931
Ama87I	CYCGRG	1 cut(s)	2553
Aor13HI	TCCGGA	1 cut(s)	692
AoxI	GGCC	9 cut(s)	406, 479, 766, 982, 1348, 1547, 2429, 2852, 2874
ApeKI	GCWGC	4 cut(s)	1712, 2066, 2207, 2219
ApoI	RAATTY	7 cut(s)	227, 502, 627, 862, 1234, 1755, 2289
AseI	ATTAAT	1 cut(s)	1955
AsiGI	ACCGGT	1 cut(s)	3035
Asp700I	GAANNNNTTC	4 cut(s)	351, 398, 1721, 2013
AspA2I	CCTAGG	1 cut(s)	37
AspLEI	GCGC	2 cut(s)	175, 1263
AsuC2I	CCSGG	1 cut(s)	1212
AsuHPI	GGTGA	6 cut(s)	635, 1817, 1921, 2177, 2990, 2996
AvaI	CYCGRG	1 cut(s)	2553
AvaII	GGWCC	5 cut(s)	103, 511, 1292, 1782, 1814
AvrII	CCTAGG	1 cut(s)	37
BaeI	ACNNNNGTAYC	2 cut(s)	268, 301
BalI	TGGCCA	1 cut(s)	2876
BamHI	GGATCC	1 cut(s)	2764
BanI	GGYRCC	2 cut(s)	2117, 2581
BanII	GRGCYC	1 cut(s)	842
BarI	GAAGNNNNNNTAC	4 cut(s)	756, 788, 904, 936
BauI	CACGAG	1 cut(s)	2865
BbsI	GAAGAC	1 cut(s)	1118
Bbv12I	GWGCWC	3 cut(s)	154, 239, 842
BbvI	GCAGC	4 cut(s)	1724, 2053, 2206, 2219
BccI	CCATC	6 cut(s)	115, 212, 221, 1307, 2863, 2969
BceAI	ACGGC	1 cut(s)	1543
BciT130I	CCWGG	2 cut(s)	590, 1887
BclI	TGATCA	1 cut(s)	2326
BcnI	CCSGG	1 cut(s)	1212
BcoDI	GTCTC	8 cut(s)	736, 1541, 1933, 2648, 2662, 2764, 2868, 3072
BfaI	CTAG	6 cut(s)	38, 323, 884, 1658, 2099, 2249
BfmI	CTRYAG	2 cut(s)	1506, 2229
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	3 cut(s)	299, 1682, 1793
BisI	GCNGC	5 cut(s)	1713, 2067, 2208, 2220, 2852
BlnI	CCTAGG	1 cut(s)	37
BlsI	GCNGC	5 cut(s)	1714, 2068, 2209, 2221, 2853
Bme1390I	CCNGG	3 cut(s)	590, 1212, 1887
Bme18I	GGWCC	5 cut(s)	103, 511, 1292, 1782, 1814
BmeT110I	CYCGRG	1 cut(s)	2553
BmiI	GGNNCC	6 cut(s)	105, 409, 1783, 2119, 2583, 2766
BmrFI	CCNGG	3 cut(s)	590, 1212, 1887
BmrI	ACTGGG	5 cut(s)	784, 1470, 2947, 3003, 3108
BmuI	ACTGGG	5 cut(s)	784, 1470, 2947, 3003, 3108
BpiI	GAAGAC	1 cut(s)	1118
BplI	GAGNNNNNCTC	4 cut(s)	829, 861, 1114, 1146
BpmI	CTGGAG	5 cut(s)	546, 572, 1523, 1869, 2907
BpuMI	CCSGG	1 cut(s)	1212
Bsa29I	ATCGAT	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	2082
BsaI	GGTCTC	2 cut(s)	1541, 2662
BsaJI	CCNNGG	8 cut(s)	37, 72, 489, 1133, 1446, 1683, 2188, 2432
BsaWI	WCCGGW	4 cut(s)	692, 2584, 3035, 3047
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	9 cut(s)	145, 203, 569, 692, 1802, 2329, 2719, 2993, 2994
Bse118I	RCCGGY	1 cut(s)	3035
Bse3DI	GCAATG	3 cut(s)	1402, 2601, 3089
Bse8I	GATNNNNATC	1 cut(s)	2082
BseAI	TCCGGA	1 cut(s)	692
BseBI	CCWGG	2 cut(s)	590, 1887
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	8 cut(s)	37, 72, 489, 1133, 1446, 1683, 2188, 2432
BseGI	GGATG	5 cut(s)	1474, 2270, 2698, 2837, 3003
BseJI	GATNNNNATC	1 cut(s)	2082
BseLI	CCNNNNNNNGG	9 cut(s)	145, 203, 569, 692, 1802, 2329, 2719, 2993, 2994
BseMI	GCAATG	3 cut(s)	1402, 2601, 3089
BseMII	CTCAG	6 cut(s)	171, 299, 731, 1404, 1508, 2846
BseRI	GAGGAG	3 cut(s)	832, 1993, 2435
BseXI	GCAGC	4 cut(s)	1724, 2053, 2206, 2219
BseYI	CCCAGC	2 cut(s)	1351, 3008
Bsh1236I	CGCG	2 cut(s)	1261, 2032
BshFI	GGCC	9 cut(s)	408, 481, 768, 984, 1350, 1549, 2431, 2854, 2876
BshNI	GGYRCC	2 cut(s)	2117, 2581
BshTI	ACCGGT	1 cut(s)	3035
BshVI	ATCGAT	1 cut(s)	216
BsiHKAI	GWGCWC	3 cut(s)	154, 239, 842
BsiHKCI	CYCGRG	1 cut(s)	2553
BsiSI	CCGG	6 cut(s)	693, 1212, 2585, 2697, 3036, 3048
BslFI	GGGAC	3 cut(s)	1795, 2415, 2578
BslI	CCNNNNNNNGG	9 cut(s)	145, 203, 569, 692, 1802, 2329, 2719, 2993, 2994
BsmAI	GTCTC	8 cut(s)	736, 1541, 1933, 2648, 2662, 2764, 2868, 3072
BsmFI	GGGAC	3 cut(s)	1795, 2415, 2578
BsmI	GAATGC	2 cut(s)	7, 470
BsnI	GGCC	9 cut(s)	408, 481, 768, 984, 1350, 1549, 2431, 2854, 2876
Bso31I	GGTCTC	2 cut(s)	1541, 2662
BsoBI	CYCGRG	1 cut(s)	2553
Bsp1286I	GDGCHC	3 cut(s)	154, 239, 842
Bsp13I	TCCGGA	1 cut(s)	692
Bsp143I	GATC	8 cut(s)	206, 388, 483, 1055, 1511, 1591, 2326, 2764
BspACI	CCGC	5 cut(s)	417, 1259, 1400, 2030, 2851
BspANI	GGCC	9 cut(s)	408, 481, 768, 984, 1350, 1549, 2431, 2854, 2876
BspCNI	CTCAG	6 cut(s)	170, 300, 732, 1405, 1509, 2845
BspDI	ATCGAT	1 cut(s)	216
BspEI	TCCGGA	1 cut(s)	692
BspFNI	CGCG	2 cut(s)	1261, 2032
BspHI	TCATGA	1 cut(s)	2416
BspLI	GGNNCC	6 cut(s)	105, 409, 1783, 2119, 2583, 2766
BspMAI	CTGCAG	2 cut(s)	1510, 2233
BspMI	ACCTGC	3 cut(s)	299, 1682, 1793
BspPI	GGATC	6 cut(s)	214, 478, 1063, 1519, 2759, 2772
BspQI	GCTCTTC	2 cut(s)	342, 1889
BspT107I	GGYRCC	2 cut(s)	2117, 2581
BspTNI	GGTCTC	2 cut(s)	1541, 2662
BsrDI	GCAATG	3 cut(s)	1402, 2601, 3089
BsrFI	RCCGGY	1 cut(s)	3035
BssAI	RCCGGY	1 cut(s)	3035
BssECI	CCNNGG	8 cut(s)	37, 72, 489, 1133, 1446, 1683, 2188, 2432
BssMI	GATC	8 cut(s)	206, 388, 483, 1055, 1511, 1591, 2326, 2764
BssNAI	GTATAC	1 cut(s)	1793
BssSI	CACGAG	1 cut(s)	2865
BssT1I	CCWWGG	6 cut(s)	37, 489, 1446, 1683, 2188, 2432
Bst1107I	GTATAC	1 cut(s)	1793
Bst2BI	CACGAG	1 cut(s)	2865
Bst2UI	CCWGG	2 cut(s)	590, 1887
Bst4CI	ACNGT	8 cut(s)	144, 165, 1286, 1558, 1831, 1861, 2122, 2259
Bst6I	CTCTTC	3 cut(s)	342, 1889, 2189
BstAPI	GCANNNNNTGC	1 cut(s)	2216
BstC8I	GCNNGC	2 cut(s)	1949, 2883
BstDEI	CTNAG	7 cut(s)	157, 308, 740, 1413, 1517, 2660, 2832
BstDSI	CCRYGG	2 cut(s)	72, 1133
BstEII	GGTNACC	1 cut(s)	1138
BstENI	CCTNNNNNAGG	2 cut(s)	1800, 2327
BstF5I	GGATG	5 cut(s)	1474, 2270, 2698, 2837, 3003
BstFNI	CGCG	2 cut(s)	1261, 2032
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	2 cut(s)	175, 1263
BstKTI	GATC	8 cut(s)	209, 391, 486, 1058, 1514, 1594, 2329, 2767
BstMAI	GTCTC	8 cut(s)	736, 1541, 1933, 2648, 2662, 2764, 2868, 3072
BstMBI	GATC	8 cut(s)	206, 388, 483, 1055, 1511, 1591, 2326, 2764
BstMWI	GCNNNNNNNGC	8 cut(s)	83, 92, 158, 467, 2216, 2228, 2755, 2882
BstNI	CCWGG	2 cut(s)	590, 1887
BstNSI	RCATGY	1 cut(s)	661
BstPI	GGTNACC	1 cut(s)	1138
BstSCI	CCNGG	3 cut(s)	588, 1210, 1885
BstSFI	CTRYAG	2 cut(s)	1506, 2229
BstUI	CGCG	2 cut(s)	1261, 2032
BstV1I	GCAGC	4 cut(s)	1724, 2053, 2206, 2219
BstV2I	GAAGAC	1 cut(s)	1118
BstX2I	RGATCY	1 cut(s)	2764
BstYI	RGATCY	1 cut(s)	2764
BstZ17I	GTATAC	1 cut(s)	1793
Bsu15I	ATCGAT	1 cut(s)	216
BsuRI	GGCC	9 cut(s)	408, 481, 768, 984, 1350, 1549, 2431, 2854, 2876
BsuTUI	ATCGAT	1 cut(s)	216
BtgI	CCRYGG	2 cut(s)	72, 1133
BtgZI	GCGATG	1 cut(s)	2225
BtsCI	GGATG	5 cut(s)	1474, 2270, 2698, 2837, 3003
BtsI	GCAGTG	2 cut(s)	208, 2238
BtsIMutI	CAGTG	9 cut(s)	149, 193, 208, 737, 826, 1514, 2238, 2676, 3096
BveI	ACCTGC	3 cut(s)	299, 1682, 1793
Cac8I	GCNNGC	2 cut(s)	1949, 2883
CaiI	CAGNNNCTG	2 cut(s)	955, 1931
CciI	TCATGA	1 cut(s)	2416
CfoI	GCGC	2 cut(s)	175, 1263
Cfr10I	RCCGGY	1 cut(s)	3035
ClaI	ATCGAT	1 cut(s)	216
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	5 cut(s)	285, 1080, 1374, 2441, 2829
CspAI	ACCGGT	1 cut(s)	3035
CspCI	CAANNNNNGTGG	2 cut(s)	2136, 2171
CviQI	GTAC	5 cut(s)	285, 1080, 1374, 2441, 2829
DdeI	CTNAG	7 cut(s)	157, 308, 740, 1413, 1517, 2660, 2832
DpnI	GATC	8 cut(s)	208, 390, 485, 1057, 1513, 1593, 2328, 2766
DpnII	GATC	8 cut(s)	206, 388, 483, 1055, 1511, 1591, 2326, 2764
DraI	TTTAAA	1 cut(s)	1852
DrdI	GACNNNNNNGTC	1 cut(s)	451
DseDI	GACNNNNNNGTC	1 cut(s)	451
EaeI	YGGCCR	2 cut(s)	2852, 2874
Eam1104I	CTCTTC	3 cut(s)	342, 1889, 2189
EarI	CTCTTC	3 cut(s)	342, 1889, 2189
Ecl136II	GAGCTC	1 cut(s)	840
Eco130I	CCWWGG	6 cut(s)	37, 489, 1446, 1683, 2188, 2432
Eco24I	GRGCYC	1 cut(s)	842
Eco31I	GGTCTC	2 cut(s)	1541, 2662
Eco32I	GATATC	2 cut(s)	1253, 1639
Eco47I	GGWCC	5 cut(s)	103, 511, 1292, 1782, 1814
Eco53kI	GAGCTC	1 cut(s)	840
Eco57I	CTGAAG	3 cut(s)	132, 1070, 2163
Eco88I	CYCGRG	1 cut(s)	2553
Eco91I	GGTNACC	1 cut(s)	1138
EcoICRI	GAGCTC	1 cut(s)	840
EcoNI	CCTNNNNNAGG	2 cut(s)	1800, 2327
EcoO109I	RGGNCCY	3 cut(s)	407, 511, 1782
EcoO65I	GGTNACC	1 cut(s)	1138
EcoRII	CCWGG	2 cut(s)	588, 1885
EcoRV	GATATC	2 cut(s)	1253, 1639
EcoT14I	CCWWGG	6 cut(s)	37, 489, 1446, 1683, 2188, 2432
EcoT22I	ATGCAT	2 cut(s)	472, 901
EcoT38I	GRGCYC	1 cut(s)	842
ErhI	CCWWGG	6 cut(s)	37, 489, 1446, 1683, 2188, 2432
FalI	AAGNNNNNCTT	2 cut(s)	2803, 2835
FaqI	GGGAC	3 cut(s)	1795, 2415, 2578
FauI	CCCGC	4 cut(s)	424, 1266, 1393, 2037
FbaI	TGATCA	1 cut(s)	2326
FblI	GTMKAC	3 cut(s)	1095, 1792, 3020
Fnu4HI	GCNGC	5 cut(s)	1713, 2067, 2208, 2220, 2852
FokI	GGATG	5 cut(s)	1481, 2277, 2705, 2824, 3010
FriOI	GRGCYC	1 cut(s)	842
Fsp4HI	GCNGC	5 cut(s)	1713, 2067, 2208, 2220, 2852
FspBI	CTAG	6 cut(s)	38, 323, 884, 1658, 2099, 2249
GlaI	GCGC	2 cut(s)	174, 1262
GluI	GCNGC	5 cut(s)	1713, 2067, 2208, 2220, 2852
GsaI	CCCAGC	2 cut(s)	1355, 3012
GsuI	CTGGAG	5 cut(s)	546, 572, 1523, 1869, 2907
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	9 cut(s)	408, 481, 768, 984, 1350, 1549, 2431, 2854, 2876
HapII	CCGG	6 cut(s)	693, 1212, 2585, 2697, 3036, 3048
HgaI	GACGC	1 cut(s)	454
HhaI	GCGC	2 cut(s)	175, 1263
Hin6I	GCGC	2 cut(s)	173, 1261
HinP1I	GCGC	2 cut(s)	173, 1261
HincII	GTYRAC	2 cut(s)	795, 1171
HindII	GTYRAC	2 cut(s)	795, 1171
HindIII	AAGCTT	2 cut(s)	2519, 2962
HpaII	CCGG	6 cut(s)	693, 1212, 2585, 2697, 3036, 3048
HphI	GGTGA	6 cut(s)	635, 1817, 1921, 2177, 2990, 2996
HpyCH4III	ACNGT	8 cut(s)	144, 165, 1286, 1558, 1831, 1861, 2122, 2259
HpyCH4IV	ACGT	4 cut(s)	66, 1092, 1205, 1734
HpyF10VI	GCNNNNNNNGC	8 cut(s)	83, 92, 158, 467, 2216, 2228, 2755, 2882
HpyF3I	CTNAG	7 cut(s)	157, 308, 740, 1413, 1517, 2660, 2832
HpySE526I	ACGT	4 cut(s)	66, 1092, 1205, 1734
HspAI	GCGC	2 cut(s)	173, 1261
Kpn2I	TCCGGA	1 cut(s)	692
Ksp22I	TGATCA	1 cut(s)	2326
Kzo9I	GATC	8 cut(s)	206, 388, 483, 1055, 1511, 1591, 2326, 2764
LguI	GCTCTTC	2 cut(s)	342, 1889
LmnI	GCTCC	4 cut(s)	149, 591, 837, 845
Lsp1109I	GCAGC	4 cut(s)	1724, 2053, 2206, 2219
MaeI	CTAG	6 cut(s)	38, 323, 884, 1658, 2099, 2249
MaeII	ACGT	4 cut(s)	66, 1092, 1205, 1734
MaeIII	GTNAC	7 cut(s)	269, 653, 1138, 1366, 1456, 1471, 2953
MalI	GATC	8 cut(s)	208, 390, 485, 1057, 1513, 1593, 2328, 2766
MboI	GATC	8 cut(s)	206, 388, 483, 1055, 1511, 1591, 2326, 2764
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	2764
MhlI	GDGCHC	3 cut(s)	154, 239, 842
MlsI	TGGCCA	1 cut(s)	2876
MluNI	TGGCCA	1 cut(s)	2876
MlyI	GAGTC	6 cut(s)	1132, 2206, 2432, 2650, 2722, 2995
MmeI	TCCRAC	4 cut(s)	163, 1446, 1719, 1915
Mox20I	TGGCCA	1 cut(s)	2876
Mph1103I	ATGCAT	2 cut(s)	472, 901
MroI	TCCGGA	1 cut(s)	692
MroXI	GAANNNNTTC	4 cut(s)	351, 398, 1721, 2013
MscI	TGGCCA	1 cut(s)	2876
MseI	TTAA	7 cut(s)	536, 1185, 1703, 1851, 1955, 2060, 2082
MslI	CAYNNNNRTG	2 cut(s)	25, 2448
Msp20I	TGGCCA	1 cut(s)	2876
MspA1I	CMGCKG	1 cut(s)	609
MspI	CCGG	6 cut(s)	693, 1212, 2585, 2697, 3036, 3048
MspR9I	CCNGG	3 cut(s)	590, 1212, 1887
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	2 cut(s)	7, 470
MvaI	CCWGG	2 cut(s)	590, 1887
MvnI	CGCG	2 cut(s)	1261, 2032
MwoI	GCNNNNNNNGC	8 cut(s)	83, 92, 158, 467, 2216, 2228, 2755, 2882
NciI	CCSGG	1 cut(s)	1212
NdeII	GATC	8 cut(s)	206, 388, 483, 1055, 1511, 1591, 2326, 2764
NlaIV	GGNNCC	6 cut(s)	105, 409, 1783, 2119, 2583, 2766
NmuCI	GTSAC	1 cut(s)	1471
NsiI	ATGCAT	2 cut(s)	472, 901
NspI	RCATGY	1 cut(s)	661
PagI	TCATGA	1 cut(s)	2416
PaqCI	CACCTGC	2 cut(s)	299, 1682
PciSI	GCTCTTC	2 cut(s)	342, 1889
PctI	GAATGC	2 cut(s)	7, 470
PdmI	GAANNNNTTC	4 cut(s)	351, 398, 1721, 2013
PfeI	GAWTC	5 cut(s)	816, 1423, 1870, 2373, 3076
PflMI	CCANNNNNTGG	2 cut(s)	203, 569
PfoI	TCCNGGA	3 cut(s)	588, 1210, 1885
PinAI	ACCGGT	1 cut(s)	3035
PkrI	GCNGC	5 cut(s)	1714, 2068, 2209, 2221, 2853
PleI	GAGTC	6 cut(s)	1131, 2205, 2431, 2650, 2722, 2995
PpsI	GAGTC	6 cut(s)	1131, 2205, 2431, 2650, 2722, 2995
PpuMI	RGGWCCY	2 cut(s)	511, 1782
PshBI	ATTAAT	1 cut(s)	1955
Psp124BI	GAGCTC	1 cut(s)	842
Psp1406I	AACGTT	1 cut(s)	1205
Psp5II	RGGWCCY	2 cut(s)	511, 1782
Psp6I	CCWGG	2 cut(s)	588, 1885
PspEI	GGTNACC	1 cut(s)	1138
PspFI	CCCAGC	2 cut(s)	1351, 3008
PspGI	CCWGG	2 cut(s)	588, 1885
PspN4I	GGNNCC	6 cut(s)	105, 409, 1783, 2119, 2583, 2766
PspPPI	RGGWCCY	2 cut(s)	511, 1782
PstI	CTGCAG	2 cut(s)	1510, 2233
PstNI	CAGNNNCTG	2 cut(s)	955, 1931
PsuI	RGATCY	1 cut(s)	2764
PvuII	CAGCTG	1 cut(s)	609
RsaI	GTAC	5 cut(s)	286, 1081, 1375, 2442, 2830
RsaNI	GTAC	5 cut(s)	285, 1080, 1374, 2441, 2829
RseI	CAYNNNNRTG	2 cut(s)	25, 2448
SacI	GAGCTC	1 cut(s)	842
SapI	GCTCTTC	2 cut(s)	342, 1889
SaqAI	TTAA	7 cut(s)	536, 1185, 1703, 1851, 1955, 2060, 2082
SatI	GCNGC	5 cut(s)	1713, 2067, 2208, 2220, 2852
Sau3AI	GATC	8 cut(s)	206, 388, 483, 1055, 1511, 1591, 2326, 2764
SchI	GAGTC	6 cut(s)	1132, 2206, 2432, 2650, 2722, 2995
ScrFI	CCNGG	3 cut(s)	590, 1212, 1887
SduI	GDGCHC	3 cut(s)	154, 239, 842
SfcI	CTRYAG	2 cut(s)	1506, 2229
SinI	GGWCC	5 cut(s)	103, 511, 1292, 1782, 1814
SmiMI	CAYNNNNRTG	2 cut(s)	25, 2448
SsiI	CCGC	5 cut(s)	417, 1259, 1400, 2030, 2851
SspI	AATATT	2 cut(s)	1959, 2467
SspMI	CTAG	6 cut(s)	38, 323, 884, 1658, 2099, 2249
SstI	GAGCTC	1 cut(s)	842
StyD4I	CCNGG	3 cut(s)	588, 1210, 1885
StyI	CCWWGG	6 cut(s)	37, 489, 1446, 1683, 2188, 2432
TaaI	ACNGT	8 cut(s)	144, 165, 1286, 1558, 1831, 1861, 2122, 2259
TaiI	ACGT	4 cut(s)	69, 1095, 1208, 1737
TaqI	TCGA	3 cut(s)	216, 2274, 2426
TaqII	GACCGA	1 cut(s)	2792
TatI	WGTACW	4 cut(s)	1079, 1373, 2440, 2828
TauI	GCSGC	1 cut(s)	2854
TfiI	GAWTC	5 cut(s)	816, 1423, 1870, 2373, 3076
Tru1I	TTAA	7 cut(s)	536, 1185, 1703, 1851, 1955, 2060, 2082
Tru9I	TTAA	7 cut(s)	536, 1185, 1703, 1851, 1955, 2060, 2082
TscAI	CASTG	9 cut(s)	149, 193, 208, 744, 826, 1521, 2238, 2683, 3103
TseFI	GTSAC	1 cut(s)	1471
TseI	GCWGC	4 cut(s)	1712, 2066, 2207, 2219
Tsp45I	GTSAC	1 cut(s)	1471
TspGWI	ACGGA	3 cut(s)	61, 116, 1122
TspRI	CASTG	9 cut(s)	149, 193, 208, 744, 826, 1521, 2238, 2683, 3103
Van91I	CCANNNNNTGG	2 cut(s)	203, 569
VpaK11BI	GGWCC	5 cut(s)	103, 511, 1292, 1782, 1814
VspI	ATTAAT	1 cut(s)	1955
XagI	CCTNNNNNAGG	2 cut(s)	1800, 2327
XapI	RAATTY	7 cut(s)	227, 502, 627, 862, 1234, 1755, 2289
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	1 cut(s)	661
XmaJI	CCTAGG	1 cut(s)	37
XmiI	GTMKAC	3 cut(s)	1095, 1792, 3020
XmnI	GAANNNNTTC	4 cut(s)	351, 398, 1721, 2013
XspI	CTAG	6 cut(s)	38, 323, 884, 1658, 2099, 2249
Zsp2I	ATGCAT	2 cut(s)	472, 901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.