Rh5BG137000

Di-glucose binding within endoplasmic reticulum

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
14016518 .. 14027750
11233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG137000.1

Sequence Viewer

Length: 354 bp
ATGGATGAGATTCTAGAGCTGACTCCGCCAGAAGCGAAGAAGCTGATCAACAAGGCGTCGAGGAGAGTCTATGCTCTAAACAAACGAGGAGTGTTTGCAAAGGAACTTTTGGCTTTGAGATACCTGACCTTCTTGAAAATCGATCAGAATTATTTCACAGGCCCTCTACCAGCATGGATCGGCAATATGACTGCATTGACATTATTGTCAATTGCTCACAATGCATTCTCTGGGCCCATCCCCAAGGAGCTTGGAAACCTCAAGGACTTAAATATGCTTTTCTCAATGCAGTTTTATATGTGGGGAAAAATTGGGAAAAAGATGACGGAAGGTAAGATGGAATTGGGTCTGTGA

Protein Analysis

117

Amino Acids

13.28

Weight (kDa)

9.66

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 36 - 101 4.9e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 205
AciI CCGC 1 cut(s) 26
AclWI GGATC 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 56
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 3 cut(s) 19, 43, 250
AluI AGCT 3 cut(s) 19, 43, 250
AlwI GGATC 1 cut(s) 185
AoxI GGCC 2 cut(s) 160, 233
ApaI GGGCCC 1 cut(s) 237
Asp700I GAANNNNTTC 1 cut(s) 152
AspS9I GGNCC 3 cut(s) 161, 233, 234
BaeGI GKGCMC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 237
BccI CCATC 2 cut(s) 245, 331
BclI TGATCA 1 cut(s) 45
BfaI CTAG 1 cut(s) 14
BmgT120I GGNCC 3 cut(s) 161, 233, 234
BmiI GGNNCC 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 243
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 2 cut(s) 10, 237
BseRI GAGGAG 2 cut(s) 76, 102
BseSI GKGCMC 1 cut(s) 237
BshFI GGCC 2 cut(s) 162, 235
BshVI ATCGAT 1 cut(s) 141
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 2 cut(s) 162, 235
Bsp120I GGGCCC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 3 cut(s) 45, 142, 177
BspACI CCGC 1 cut(s) 26
BspANI GGCC 2 cut(s) 162, 235
BspDI ATCGAT 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 3 cut(s) 45, 142, 177
BssNI GRCGYC 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 56
BstF5I GGATG 2 cut(s) 10, 237
BstKTI GATC 3 cut(s) 48, 145, 180
BstMBI GATC 3 cut(s) 45, 142, 177
BstMWI GCNNNNNNNGC 2 cut(s) 25, 221
BstSLI GKGCMC 1 cut(s) 237
Bsu15I ATCGAT 1 cut(s) 141
BsuRI GGCC 2 cut(s) 162, 235
BsuTUI ATCGAT 1 cut(s) 141
BtsCI GGATG 2 cut(s) 10, 237
Cfr13I GGNCC 3 cut(s) 161, 233, 234
ClaI ATCGAT 1 cut(s) 141
CseI GACGC 1 cut(s) 45
CviAII CATG 1 cut(s) 174
CviJI RGCY 6 cut(s) 19, 43, 113, 162, 235, 250
CviKI_1 RGCY 6 cut(s) 19, 43, 113, 162, 235, 250
DpnI GATC 3 cut(s) 47, 144, 179
DpnII GATC 3 cut(s) 45, 142, 177
DrdI GACNNNNNNGTC 1 cut(s) 205
DseDI GACNNNNNNGTC 1 cut(s) 205
EciI GGCGGA 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 1 cut(s) 177
FaiI YATR 6 cut(s) 72, 175, 188, 275, 297, 299
FatI CATG 1 cut(s) 173
FbaI TGATCA 1 cut(s) 45
FokI GGATG 2 cut(s) 17, 224
FriOI GRGCYC 1 cut(s) 237
FspBI CTAG 1 cut(s) 14
HaeIII GGCC 2 cut(s) 162, 235
HgaI GACGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 177
HinfI GANTC 3 cut(s) 10, 22, 66
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 2 cut(s) 14, 133
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 139, 323
HpyCH4V TGCA 4 cut(s) 98, 194, 224, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 221
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 3 cut(s) 45, 142, 177
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 5 cut(s) 42, 137, 144, 183, 216
MaeI CTAG 1 cut(s) 14
MalI GATC 3 cut(s) 47, 144, 179
MboI GATC 3 cut(s) 45, 142, 177
MboII GAAGA 1 cut(s) 49
MfeI CAATTG 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 4 cut(s) 148, 210, 309, 341
MlyI GAGTC 2 cut(s) 16, 75
MnlI CCTC 4 cut(s) 54, 80, 174, 269
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 152
MseI TTAA 1 cut(s) 269
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 25, 221
NdeII GATC 3 cut(s) 45, 142, 177
NlaIII CATG 1 cut(s) 177
NlaIV GGNNCC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 226
PctI GAATGC 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 10
PleI GAGTC 2 cut(s) 16, 74
PpsI GAGTC 2 cut(s) 16, 74
PspN4I GGNNCC 1 cut(s) 235
PspOMI GGGCCC 1 cut(s) 233
PspPI GGNCC 3 cut(s) 161, 233, 234
SaqAI TTAA 1 cut(s) 269
Sau3AI GATC 3 cut(s) 45, 142, 177
Sau96I GGNCC 3 cut(s) 161, 233, 234
SchI GAGTC 2 cut(s) 16, 75
SduI GDGCHC 1 cut(s) 237
SetI ASST 7 cut(s) 21, 45, 126, 131, 252, 261, 334
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 4 cut(s) 148, 210, 309, 341
SsiI CCGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 243
TaqI TCGA 2 cut(s) 59, 141
TasI AATT 4 cut(s) 148, 210, 309, 341
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 341
XbaI TCTAGA 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 152
XspI CTAG 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.