MD05G1180500.v1.1

Root hair defective 3 GTP-binding protein (RHD3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000088
Physical Location & Seq
Reverse (-)
30801647 .. 30804727
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1180500.v1.1.491

Sequence Viewer

Length: 1002 bp
ATGTGGGATTTCAACCAAAATATGGTGATGTTGTGGATCAATCAGAATTATTTCACCGGTCCCCTACCAGCGGTCATTGGCAATATGTCTGCATTGATTGTATTGTCAATTAGAATCAATTCATTCTCTGGGCCCATCCCCAAGGAGCTTGGAAACCTTAAGGAGCTAACTATGCTCTACGTAGACAGCTGTGGACTCAGTGGTGAAATTCCTTCAACATTTGCCAAGCTCACCAACATGCAAGTCGTCTGGGCATCGGACAATCCTTTCTCAGGAAAGATACCTGATTTCATAGGGAATTGGACACAACTCTATCATTTGGAATTTCAAGGCAACTCTTTCGAAGGCCCAATACCAACCAGCTTTTCTCAACTGACCTCATTGAACTATCTGCTAATCAGTGATATATACAATGGGAGCTCCTCTCTTGATTTCATAAAAAATCTGAAAAACTTGACTGAATTAGGACTACGAAACGCATTAATCACTGGTACCATCCCTTCTGATATTGGAGAATATCAAAGTCTAAGGACACTGGATCTGAGTTTCAACAATTTGACAGGCCAACTCCCAAGTTTTTTGTTCAACATGCGTTCTCTTACATCCTTGTTTCTTGGAAACAATAGTCTCTCCGGACCTCTTCCGAGCCGAAAGAGCAATCAACTTCAGACTATAGATTTGTCTTACAATTTTTTATCAGGAAGCTTTCCCCAGTGGGTGACCACAATACCACAACTGAACTTAGTGGTCAACAACTTCACATTTGACAGTTCAAACATAACTTTTCCTGGATTGAATTGCCTCCAGAGAAATTTTCCATGCAATCGAAATACCCCACGATGTAATCTGCTCTTATGTCACCAATCATTTACCATTTTAACGCAACCTCATGTTAGAGGAAAAGGCATTGCTTCTCTAGTTATGTATACATATGGATATAGATTGCAAGCATGTTTTCATAAGTTCAGTAATACGCATAACTGGTTAGAAATATGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

334

Amino Acids

37.42

Weight (kDa)

6.94

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 26 - 131 2.2e-07 Leucine-rich repeat region
LRR_14 PF23598 69 - 155 3.4e-06 Leucine-rich repeat region
LRR_14 PF23598 131 - 216 5.4e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 491
AccB1I GGYRCC 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 22
AccI GTMKAC 2 cut(s) 183, 926
AccIII TCCGGA 1 cut(s) 632
AciI CCGC 1 cut(s) 71
AclWI GGATC 2 cut(s) 44, 546
AcsI RAATTY 3 cut(s) 207, 323, 811
AcuI CTGAAG 1 cut(s) 650
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 3 cut(s) 22, 70, 272
AflII CTTAAG 1 cut(s) 158
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 8 cut(s) 13, 216, 329, 385, 550, 586, 774, 796
AjnI CCWGG 1 cut(s) 787
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AluBI AGCT 7 cut(s) 148, 166, 189, 229, 363, 420, 705
AluI AGCT 7 cut(s) 148, 166, 189, 229, 363, 420, 705
Alw21I GWGCWC 1 cut(s) 422
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 2 cut(s) 44, 546
Aor13HI TCCGGA 1 cut(s) 632
AoxI GGCC 3 cut(s) 131, 346, 562
ApaI GGGCCC 1 cut(s) 135
ApoI RAATTY 3 cut(s) 207, 323, 811
ArsI GACNNNNNNTTYG 2 cut(s) 661, 693
AseI ATTAAT 1 cut(s) 482
AsiGI ACCGGT 1 cut(s) 56
Asp700I GAANNNNTTC 2 cut(s) 50, 118
Asp718I GGTACC 1 cut(s) 491
AspS9I GGNCC 5 cut(s) 59, 131, 132, 347, 635
AsuHPI GGTGA 6 cut(s) 37, 46, 215, 223, 730, 851
AsuII TTCGAA 1 cut(s) 342
AvaII GGWCC 2 cut(s) 59, 635
BaeGI GKGCMC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 2 cut(s) 135, 422
BarI GAAGNNNNNNTAC 4 cut(s) 336, 368, 484, 516
Bbv12I GWGCWC 1 cut(s) 422
BccI CCATC 2 cut(s) 143, 503
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciT130I CCWGG 1 cut(s) 789
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 1 cut(s) 917
BfmI CTRYAG 1 cut(s) 672
BfrI CTTAAG 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 789
Bme18I GGWCC 2 cut(s) 59, 635
BmgT120I GGNCC 5 cut(s) 59, 131, 132, 347, 635
BmiI GGNNCC 3 cut(s) 61, 133, 493
BmrFI CCNGG 1 cut(s) 789
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 1 cut(s) 263
BmuI ACTGGG 1 cut(s) 706
BplI GAGNNNNNCTC 2 cut(s) 409, 441
BpmI CTGGAG 1 cut(s) 788
Bpu14I TTCGAA 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 2 cut(s) 56, 632
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 70, 272
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 4 cut(s) 493, 540, 712, 986
Bse3DI GCAATG 1 cut(s) 906
BseAI TCCGGA 1 cut(s) 632
BseBI CCWGG 1 cut(s) 789
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 3 cut(s) 135, 495, 602
BseLI CCNNNNNNNGG 3 cut(s) 22, 70, 272
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 3 cut(s) 211, 285, 533
BseNI ACTGG 4 cut(s) 493, 540, 712, 986
BseRI GAGGAG 1 cut(s) 412
BseSI GKGCMC 1 cut(s) 135
BshFI GGCC 3 cut(s) 133, 348, 564
BshNI GGYRCC 1 cut(s) 491
BshTI ACCGGT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 422
BsiSI CCGG 2 cut(s) 57, 633
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 3 cut(s) 22, 70, 272
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 3 cut(s) 133, 348, 564
Bsp119I TTCGAA 1 cut(s) 342
Bsp120I GGGCCC 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 135, 422
Bsp13I TCCGGA 1 cut(s) 632
Bsp143I GATC 2 cut(s) 36, 538
BspACI CCGC 1 cut(s) 71
BspANI GGCC 3 cut(s) 133, 348, 564
BspCNI CTCAG 3 cut(s) 210, 284, 534
BspEI TCCGGA 1 cut(s) 632
BspLI GGNNCC 3 cut(s) 61, 133, 493
BspPI GGATC 2 cut(s) 44, 546
BspT104I TTCGAA 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 491
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 906
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 4 cut(s) 493, 540, 712, 986
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 36, 538
BssNAI GTATAC 1 cut(s) 927
BssT1I CCWWGG 1 cut(s) 141
Bst1107I GTATAC 1 cut(s) 927
Bst2UI CCWGG 1 cut(s) 789
Bst4CI ACNGT 1 cut(s) 770
Bst6I CTCTTC 1 cut(s) 645
BstAFI CTTAAG 1 cut(s) 158
BstBAI YACGTR 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 948
BstDEI CTNAG 5 cut(s) 197, 271, 527, 542, 742
BstEII GGTNACC 1 cut(s) 718
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 3 cut(s) 135, 495, 602
BstKTI GATC 2 cut(s) 39, 541
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 2 cut(s) 36, 538
BstMWI GCNNNNNNNGC 2 cut(s) 172, 654
BstNI CCWGG 1 cut(s) 789
BstNSI RCATGY 3 cut(s) 241, 592, 954
BstPI GGTNACC 1 cut(s) 718
BstSCI CCNGG 1 cut(s) 787
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 1 cut(s) 135
BstSNI TACGTA 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BstZ17I GTATAC 1 cut(s) 927
BsuRI GGCC 3 cut(s) 133, 348, 564
BtsCI GGATG 3 cut(s) 135, 495, 602
BtsIMutI CAGTG 5 cut(s) 205, 406, 486, 533, 719
Cac8I GCNNGC 1 cut(s) 948
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 5 cut(s) 59, 131, 132, 347, 635
Csp6I GTAC 1 cut(s) 492
CspAI ACCGGT 1 cut(s) 56
CviAII CATG 5 cut(s) 238, 589, 819, 890, 951
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 5 cut(s) 197, 271, 527, 542, 742
DpnI GATC 2 cut(s) 38, 540
DpnII GATC 2 cut(s) 36, 538
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Ecl136II GAGCTC 1 cut(s) 420
Eco105I TACGTA 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 135, 422
Eco47I GGWCC 2 cut(s) 59, 635
Eco53kI GAGCTC 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 650
Eco91I GGTNACC 1 cut(s) 718
EcoICRI GAGCTC 1 cut(s) 420
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoO65I GGTNACC 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 787
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 135, 422
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 5 cut(s) 241, 592, 822, 893, 954
FaqI GGGAC 1 cut(s) 45
FatI CATG 5 cut(s) 237, 588, 818, 889, 950
FauNDI CATATG 1 cut(s) 931
FblI GTMKAC 2 cut(s) 183, 926
FokI GGATG 3 cut(s) 122, 482, 589
FriOI GRGCYC 2 cut(s) 135, 422
FspBI CTAG 1 cut(s) 917
GsuI CTGGAG 1 cut(s) 788
HaeIII GGCC 3 cut(s) 133, 348, 564
HapII CCGG 2 cut(s) 57, 633
Hin1II CATG 5 cut(s) 241, 592, 822, 893, 954
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HindIII AAGCTT 1 cut(s) 703
HinfI GANTC 2 cut(s) 114, 195
HpaII CCGG 2 cut(s) 57, 633
HphI GGTGA 6 cut(s) 37, 46, 215, 223, 730, 851
Hpy166II GTNNAC 4 cut(s) 184, 194, 751, 927
Hpy188I TCNGA 7 cut(s) 45, 259, 447, 505, 543, 645, 669
Hpy188III TCNNGA 5 cut(s) 273, 428, 633, 699, 805
Hpy8I GTNNAC 4 cut(s) 184, 194, 751, 927
HpyAV CCTTC 3 cut(s) 222, 338, 510
HpyCH4III ACNGT 1 cut(s) 770
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 4 cut(s) 92, 241, 822, 946
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 654
HpyF3I CTNAG 5 cut(s) 197, 271, 527, 542, 742
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 5 cut(s) 241, 592, 822, 893, 954
Kpn2I TCCGGA 1 cut(s) 632
KpnI GGTACC 1 cut(s) 495
Kzo9I GATC 2 cut(s) 36, 538
LmnI GCTCC 4 cut(s) 145, 163, 417, 425
LweI GCATC 1 cut(s) 263
MaeI CTAG 1 cut(s) 917
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 3 cut(s) 718, 857, 995
MalI GATC 2 cut(s) 38, 540
MboI GATC 2 cut(s) 36, 538
MboII GAAGA 1 cut(s) 632
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 2 cut(s) 135, 422
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 6 cut(s) 388, 433, 648, 812, 890, 897
MroI TCCGGA 1 cut(s) 632
MroXI GAANNNNTTC 2 cut(s) 50, 118
MseI TTAA 3 cut(s) 159, 482, 878
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 2 cut(s) 71, 189
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 2 cut(s) 57, 633
MspR9I CCNGG 1 cut(s) 789
MvaI CCWGG 1 cut(s) 789
MwoI GCNNNNNNNGC 2 cut(s) 172, 654
NdeI CATATG 1 cut(s) 931
NdeII GATC 2 cut(s) 36, 538
NlaIII CATG 5 cut(s) 241, 592, 822, 893, 954
NlaIV GGNNCC 3 cut(s) 61, 133, 493
NmuCI GTSAC 3 cut(s) 718, 857, 995
NspI RCATGY 3 cut(s) 241, 592, 954
NspV TTCGAA 1 cut(s) 342
PdmI GAANNNNTTC 2 cut(s) 50, 118
PfeI GAWTC 1 cut(s) 114
PflMI CCANNNNNTGG 1 cut(s) 22
PfoI TCCNGGA 1 cut(s) 787
PinAI ACCGGT 1 cut(s) 56
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
Ppu21I YACGTR 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 787
PspEI GGTNACC 1 cut(s) 718
PspGI CCWGG 1 cut(s) 787
PspN4I GGNNCC 3 cut(s) 61, 133, 493
PspOMI GGGCCC 1 cut(s) 131
PspPI GGNCC 5 cut(s) 59, 131, 132, 347, 635
PsuI RGATCY 1 cut(s) 538
PvuII CAGCTG 1 cut(s) 189
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
RseI CAYNNNNRTG 1 cut(s) 236
SacI GAGCTC 1 cut(s) 422
SaqAI TTAA 3 cut(s) 159, 482, 878
Sau3AI GATC 2 cut(s) 36, 538
Sau96I GGNCC 5 cut(s) 59, 131, 132, 347, 635
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 789
SduI GDGCHC 2 cut(s) 135, 422
SfaNI GCATC 1 cut(s) 263
SfcI CTRYAG 1 cut(s) 672
SfuI TTCGAA 1 cut(s) 342
SinI GGWCC 2 cut(s) 59, 635
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SnaBI TACGTA 1 cut(s) 181
SsiI CCGC 1 cut(s) 71
SspMI CTAG 1 cut(s) 917
SstI GAGCTC 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 787
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 770
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 342, 826
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 3 cut(s) 159, 482, 878
Tru9I TTAA 3 cut(s) 159, 482, 878
TscAI CASTG 5 cut(s) 205, 406, 493, 540, 719
TseFI GTSAC 3 cut(s) 718, 857, 995
Tsp45I GTSAC 3 cut(s) 718, 857, 995
TspDTI ATGAA 4 cut(s) 111, 280, 424, 947
TspRI CASTG 5 cut(s) 205, 406, 493, 540, 719
Van91I CCANNNNNTGG 1 cut(s) 22
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 59, 635
VspI ATTAAT 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 270
XapI RAATTY 3 cut(s) 207, 323, 811
XceI RCATGY 3 cut(s) 241, 592, 954
XmiI GTMKAC 2 cut(s) 183, 926
XmnI GAANNNNTTC 2 cut(s) 50, 118
XspI CTAG 1 cut(s) 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.