MD00G1024400.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
3988001 .. 3990480
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1024400.v1.1.491

Sequence Viewer

Length: 594 bp
ATGGTGGCGTTGAACTCAATATTTGAACAATGGGACACACAAGTGCAGTGGAAGATCAGTGGAGAACCCTGCAGTGGACCTGCCATCAACGACAACAACCCAGCCATCGCTTGCGACTGTACTTACGACAACAATGCTACATGCCACATCACTAAACTGAGCATGTATGCTCTTAACAAACGAGGGGTGTTTCCAGAAGAATTTGTGGCTTTGAGATATCTCACAGATTTAAGGATCGATCGGAATTATTTCACCGGTCACCTACCCGCATTCATTGGCAATATGTCTGCATTGACTACATTGACAATTGGCGTCAATTCATTCTCTGGGCCCATCCCCAAGGAGCTTGGAAACCTTAAGAAGCTAGTCCTGCTGGCGTTCGGATCAAATAATTTCTCCGGAACACTCCCACCAGAACTTGGTAATTTAGTCAAGCTTGAGAAACTTTACATGGACGGCTGTGGACTCGGTGGTGAAATTCCTTCAACATTTGCCAAGCTCACCAACATGCAAACCCTCTGGGCATCGGACAGTCCTTTCTCAGGAAAGATACCTGATTTTATAGGGAATTGGACACAACTCTATGATTTGTGA

Protein Analysis

198

Amino Acids

21.67

Weight (kDa)

5.11

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
AccB7I CCANNNNNTGG 1 cut(s) 419
AccIII TCCGGA 1 cut(s) 398
AciI CCGC 1 cut(s) 267
AclWI GGATC 2 cut(s) 242, 391
AcsI RAATTY 2 cut(s) 200, 477
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 3 cut(s) 74, 419, 542
AflII CTTAAG 1 cut(s) 356
AgeI ACCGGT 1 cut(s) 254
AgsI TTSAA 3 cut(s) 13, 26, 486
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 4 cut(s) 346, 364, 436, 499
AluI AGCT 4 cut(s) 346, 364, 436, 499
AlwI GGATC 2 cut(s) 242, 391
Aor13HI TCCGGA 1 cut(s) 398
AoxI GGCC 1 cut(s) 329
ApaI GGGCCC 1 cut(s) 333
ApoI RAATTY 2 cut(s) 200, 477
AsiGI ACCGGT 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 248
AspS9I GGNCC 3 cut(s) 77, 329, 330
AsuHPI GGTGA 4 cut(s) 244, 251, 485, 493
AvaII GGWCC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 333
BccI CCATC 3 cut(s) 92, 113, 341
BceAI ACGGC 1 cut(s) 472
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 70
BfrI CTTAAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 3 cut(s) 77, 329, 330
BmiI GGNNCC 1 cut(s) 331
BmsI GCATC 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 458
Bsa29I ATCGAT 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 339
BsaWI WCCGGW 2 cut(s) 254, 398
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 419, 542
Bse118I RCCGGY 1 cut(s) 254
BseAI TCCGGA 1 cut(s) 398
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 3 cut(s) 74, 419, 542
BseMII CTCAG 2 cut(s) 149, 555
BseSI GKGCMC 1 cut(s) 333
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 1 cut(s) 331
BshTI ACCGGT 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 241
BsiSI CCGG 2 cut(s) 255, 399
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 74, 419, 542
BsmFI GGGAC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 1 cut(s) 331
Bsp120I GGGCCC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 333
Bsp13I TCCGGA 1 cut(s) 398
Bsp143I GATC 4 cut(s) 54, 234, 238, 383
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 2 cut(s) 150, 554
BspDI ATCGAT 1 cut(s) 237
BspEI TCCGGA 1 cut(s) 398
BspLI GGNNCC 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 74
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 2 cut(s) 242, 391
BspTI CTTAAG 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 4 cut(s) 54, 234, 238, 383
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 119, 533
BstACI GRCGYC 1 cut(s) 312
BstAFI CTTAAG 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 112, 375
BstDEI CTNAG 2 cut(s) 158, 541
BstEII GGTNACC 1 cut(s) 257
BstENI CCTNNNNNAGG 1 cut(s) 540
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 4 cut(s) 57, 237, 241, 386
BstMBI GATC 4 cut(s) 54, 234, 238, 383
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstNSI RCATGY 3 cut(s) 144, 166, 511
BstPI GGTNACC 1 cut(s) 257
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 333
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 1 cut(s) 331
BsuTUI ATCGAT 1 cut(s) 237
BtgZI GCGATG 1 cut(s) 91
BtsCI GGATG 1 cut(s) 333
BtsI GCAGTG 2 cut(s) 53, 79
BtsIMutI CAGTG 3 cut(s) 53, 64, 79
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 112, 375
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 3 cut(s) 77, 329, 330
ClaI ATCGAT 1 cut(s) 237
CseI GACGC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 120
CspAI ACCGGT 1 cut(s) 254
CspCI CAANNNNNGTGG 2 cut(s) 29, 64
CviAII CATG 4 cut(s) 141, 163, 451, 508
CviJI RGCY 8 cut(s) 104, 209, 331, 346, 364, 436, 459, 499
CviKI_1 RGCY 8 cut(s) 104, 209, 331, 346, 364, 436, 459, 499
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 2 cut(s) 158, 541
DpnI GATC 4 cut(s) 56, 236, 240, 385
DpnII GATC 4 cut(s) 54, 234, 238, 383
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 77
Eco91I GGTNACC 1 cut(s) 257
EcoNI CCTNNNNNAGG 1 cut(s) 540
EcoO65I GGTNACC 1 cut(s) 257
EcoRV GATATC 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 4 cut(s) 144, 166, 454, 511
FaiI YATR 8 cut(s) 142, 164, 168, 284, 452, 509, 563, 585
FaqI GGGAC 1 cut(s) 47
FatI CATG 4 cut(s) 140, 162, 450, 507
FauI CCCGC 1 cut(s) 274
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 333
FspBI CTAG 1 cut(s) 365
GsaI CCCAGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 331
HapII CCGG 2 cut(s) 255, 399
HgaI GACGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 4 cut(s) 144, 166, 454, 511
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 1 cut(s) 465
HpaII CCGG 2 cut(s) 255, 399
HphI GGTGA 4 cut(s) 244, 251, 485, 493
Hpy166II GTNNAC 2 cut(s) 77, 464
Hpy188I TCNGA 3 cut(s) 243, 383, 529
Hpy188III TCNNGA 3 cut(s) 194, 399, 543
Hpy8I GTNNAC 2 cut(s) 77, 464
HpyAV CCTTC 1 cut(s) 492
HpyCH4III ACNGT 2 cut(s) 119, 533
HpyCH4V TGCA 4 cut(s) 46, 72, 290, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 2 cut(s) 158, 541
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 4 cut(s) 144, 166, 454, 511
Kpn2I TCCGGA 1 cut(s) 398
Kzo9I GATC 4 cut(s) 54, 234, 238, 383
LmnI GCTCC 1 cut(s) 343
LweI GCATC 1 cut(s) 533
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 257
MalI GATC 4 cut(s) 56, 236, 240, 385
MboI GATC 4 cut(s) 54, 234, 238, 383
MboII GAAGA 2 cut(s) 64, 209
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 8 cut(s) 200, 244, 306, 316, 391, 424, 477, 568
MlyI GAGTC 1 cut(s) 459
MnlI CCTC 2 cut(s) 176, 527
MroI TCCGGA 1 cut(s) 398
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 3 cut(s) 174, 230, 357
MslI CAYNNNNRTG 2 cut(s) 41, 506
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 2 cut(s) 255, 399
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 370
NdeII GATC 4 cut(s) 54, 234, 238, 383
NlaIII CATG 4 cut(s) 144, 166, 454, 511
NlaIV GGNNCC 1 cut(s) 331
NmuCI GTSAC 1 cut(s) 257
NspI RCATGY 3 cut(s) 144, 166, 511
OliI CACNNNNGTG 1 cut(s) 41
PctI GAATGC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 248
PflMI CCANNNNNTGG 1 cut(s) 419
PinAI ACCGGT 1 cut(s) 254
Ple19I CGATCG 1 cut(s) 241
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
PspEI GGTNACC 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 331
PspOMI GGGCCC 1 cut(s) 329
PspPI GGNCC 3 cut(s) 77, 329, 330
PstI CTGCAG 1 cut(s) 74
PvuI CGATCG 1 cut(s) 241
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 2 cut(s) 41, 506
SaqAI TTAA 3 cut(s) 174, 230, 357
Sau3AI GATC 4 cut(s) 54, 234, 238, 383
Sau96I GGNCC 3 cut(s) 77, 329, 330
SchI GAGTC 1 cut(s) 459
SduI GDGCHC 1 cut(s) 333
SetI ASST 8 cut(s) 82, 264, 348, 357, 366, 438, 501, 556
SfaNI GCATC 1 cut(s) 533
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 41, 506
SmlI CTYRAG 2 cut(s) 356, 437
SmoI CTYRAG 2 cut(s) 356, 437
Sse9I AATT 8 cut(s) 200, 244, 306, 316, 391, 424, 477, 568
SsiI CCGC 1 cut(s) 267
SspI AATATT 1 cut(s) 21
SspMI CTAG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 119, 533
TaqI TCGA 1 cut(s) 237
TasI AATT 8 cut(s) 200, 244, 306, 316, 391, 424, 477, 568
TatI WGTACW 1 cut(s) 119
Tru1I TTAA 3 cut(s) 174, 230, 357
Tru9I TTAA 3 cut(s) 174, 230, 357
TscAI CASTG 3 cut(s) 53, 64, 79
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 262, 309
TspRI CASTG 3 cut(s) 53, 64, 79
Van91I CCANNNNNTGG 1 cut(s) 419
Vha464I CTTAAG 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 77
XagI CCTNNNNNAGG 1 cut(s) 540
XapI RAATTY 2 cut(s) 200, 477
XceI RCATGY 3 cut(s) 144, 166, 511
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.