RchiOBHm_Chr5g0018911

Di-glucose binding within endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000088
Physical Location & Seq
Forward (+)
13393427 .. 13401256
7830 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29907

Sequence Viewer

Length: 2103 bp
ATGCACACTAGATTCTTGCTTAAATGGCTATACGTTGTCTACTACCTTAACAACGACGCATGTCTTGCGCCGAACTGCCATCTCCTTCTCACTTTTCAGACGAAACTTGTCCAGGTTGTTATCATGGCTCCAATTAGGAAGTGTCCTTCTGGGGCTAAAATCCAGCTTCAAGCTGGGTCTCTACTCTTCTTGTTCGGCCTCTGCTTCCAGGGTTACACTTGGTTTCAAGTTTTCACGGCTCAAAATGCTACTACTGACCCATCTGAAGTTCGAGCGTTGAACTCAATATTCTCACAATGGGATACTCAAGCGGTGGCGCTGTGGAATATCAGTGGGGAGCCATGCAGTGGATCAGCCATCAATGGAACTGAATTTGAGAGCCCTCTTAATAACCCAGCCATCATTTGCGACTGTACTTATGACAGTGGCACCACCTGCCATATTACCCGACTGAGAGTCTATGCTCTAAACAAACGAGGAGTGTTTGCAAAGGCACTTTTGGCTTTGAGATACCTGACCTTCTTGAAAATCGATCAGAATTATTTCACAGGTCCTCTACCAGCATGGATTGGCAATATGACTGCATTGACATTATTGTCAATTGCTCACAATGCATTCTCTGGGCCCATTCCCAAGGAGCTTGGAAACCTCAAGGACTTAAATATGCTGTCCTTTGGAATAAATAACTTCTCCGGAACACTCCCTCCCGAACTTGGTAATTTGGTCAAGCTTCAACAACTTTACATAAACAGCTGCGGACTCGGTGGTGAAATTCCTTCAACATTTGCTAACCTCCGCAATATGCAAGTCCTATGGGCATCAGACAATCCCTTCTCAGGAAGGATACCTGATTTCATTGGGAATTGGACAAAGATAAACTCTCTGCGATTTCAAGGGAACTCTTTTAGAGGTCCAATACCGACCAGTTTTTCTCAACTAACTGCCTTGAATTCTCTGCGAATCAGTGATATCTACAATATAAGCTCCTCTCTTGATTTCATTAAGAATTTGAAGAACTTGACTGATTTAGCGCTACGAAATGCATTAATTACTGGTAGCATCCCTTCTGATATTGGAGAATACCAAAATTTGCAGATACTGGATTTGAGTTTCAACAATTTAACAGGTCAACTTCCAGGTGGCTTGTTCAACATGAGTTCTCTAACATACTTATTTCTTGGAAACAATAGCTTGCAGGGAGCTCTTCCTAGCCAAAAGAGTGATATTCTTCACACTATAGATTTGTCTTACAACTATTTATCAGGAAGTCTTCCCCCATGGGTAACCTCAATGTCACAGCTGAACTTAGTGGTGAACAACTTCACATTGGACAGTTCAAACATAAATCTTCCTGGATTAAAATGCCTTCAAAGAAATTTTCCATGCAATAGAAATACCCCAAAATATGCAAAATTCTCAATCAACTGTGGTGGACTAGAACTGAGAGGGAGTGATGACATATTGTATGAGACTGAAGACTCAGCTCTTGGCCCAGCAACATTTATTGTAACAAGTTCAGAGAAATGGGCTGTTAGCAATGTGGGTTTGTTTGCTGACAGAAAGAATCCGAGCTTTGTGGTAAATACCCTGGCACAAGTCAATAGGACAGATGTGACCCCAGAGCTTTTCCAGACCTCAAGGTTGTCTCCAGGATCACTGAGATACTATGGCCTGGGTCTTGAGAATGGGCCTTATACTGTAAAATTGCAATTTGCAGAAACAGTTTTCGATGATCGTGCCTTGCAAACTTGGAAAAGTCTAGGACGGCGTATGTTTGATATCTATATTCAGGGGAACCTTGTGTTGAAGGACTTTGACATATCAAAGGAGGCAGGAGGGGTTTTAAGAGCTGTTGTGAAAACCTTCAGAGTTAATGTTTCAGAGAATTATCTTGAAATTCATTTATTCTGGGCTGGTAAGGGGACCTGCTGCACACCTGATCAAGGTCATTACGGCCCACTAATAGCTGCTGTGCATGCTGCTTCTGATTTTACACCTACTGTTTCTGGTGTTCCACCAACTACTGTAGGAATGAAGAGCAGGACAGGGCTGATGGGTATTCTGGTTCCTGTTGGAGTTTTGGTGTTGCTAGTTATAATTTGA

Protein Analysis

700

Amino Acids

77.03

Weight (kDa)

8.41

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 232 - 321 1.5e-07 Leucine-rich repeat region
LRR_14 PF23598 312 - 396 1.1e-06 Leucine-rich repeat region
Malectin PF11721 472 - 658 2.5e-37 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2096
AarI CACCTGC 1 cut(s) 443
AasI GACNNNNNNGTC 1 cut(s) 595
Acc36I ACCTGC 2 cut(s) 443, 1934
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 1 cut(s) 39
AccIII TCCGGA 1 cut(s) 692
AciI CCGC 3 cut(s) 311, 756, 796
AclWI GGATC 2 cut(s) 358, 1660
AcsI RAATTY 8 cut(s) 371, 771, 949, 1006, 1087, 1375, 1412, 1896
AcuI CTGAAG 3 cut(s) 285, 1494, 1849
AfaI GTAC 1 cut(s) 415
AfeI AGCGCT 1 cut(s) 1032
AfiI CCNNNNNNNGG 4 cut(s) 347, 713, 836, 1943
AhdI GACNNNNNGTC 1 cut(s) 455
AjnI CCWGG 7 cut(s) 111, 207, 1135, 1351, 1587, 1648, 1671
AloI GAACNNNNNNTCC 2 cut(s) 688, 720
Alw21I GWGCWC 1 cut(s) 1204
Alw26I GTCTC 3 cut(s) 183, 1463, 1650
AlwI GGATC 2 cut(s) 358, 1660
AlwNI CAGNNNCTG 1 cut(s) 1099
Aor13HI TCCGGA 1 cut(s) 692
Aor51HI AGCGCT 1 cut(s) 1032
AoxI GGCC 6 cut(s) 196, 623, 1489, 1669, 1688, 1954
ApaI GGGCCC 1 cut(s) 627
ApeKI GCWGC 4 cut(s) 753, 1929, 1967, 1979
ApoI RAATTY 8 cut(s) 371, 771, 949, 1006, 1087, 1375, 1412, 1896
AseI ATTAAT 1 cut(s) 1046
Asp700I GAANNNNTTC 3 cut(s) 542, 1319, 1862
AspLEI GCGC 3 cut(s) 70, 319, 1033
AspS9I GGNCC 8 cut(s) 551, 623, 624, 911, 1490, 1688, 1923, 1955
AsuHPI GGTGA 2 cut(s) 779, 1324
AvaII GGWCC 3 cut(s) 551, 911, 1923
BaeGI GKGCMC 1 cut(s) 627
BanI GGYRCC 1 cut(s) 428
BanII GRGCYC 3 cut(s) 383, 627, 1204
BarI GAAGNNNNNNTAC 2 cut(s) 1048, 1080
BbsI GAAGAC 2 cut(s) 1262, 1482
Bbv12I GWGCWC 1 cut(s) 1204
BbvI GCAGC 4 cut(s) 740, 1916, 1954, 1966
BccI CCATC 5 cut(s) 87, 268, 365, 407, 2047
BceAI ACGGC 3 cut(s) 252, 1781, 1969
BcgI CGANNNNNNTGC 2 cut(s) 1718, 1752
BciT130I CCWGG 7 cut(s) 113, 209, 1137, 1353, 1589, 1650, 1673
BciVI GTATCC 2 cut(s) 295, 837
BclI TGATCA 1 cut(s) 1939
BcoDI GTCTC 3 cut(s) 183, 1463, 1650
BfaI CTAG 5 cut(s) 9, 1209, 1436, 1760, 2090
BfmI CTRYAG 2 cut(s) 1236, 2025
BfoI RGCGCY 2 cut(s) 320, 1034
BfuAI ACCTGC 2 cut(s) 443, 1934
BfuI GTATCC 2 cut(s) 295, 837
BisI GCNGC 4 cut(s) 754, 1930, 1968, 1980
BlsI GCNGC 4 cut(s) 755, 1931, 1969, 1981
Bme1390I CCNGG 7 cut(s) 113, 209, 1137, 1353, 1589, 1650, 1673
Bme18I GGWCC 3 cut(s) 551, 911, 1923
BmeRI GACNNNNNGTC 1 cut(s) 455
BmgT120I GGNCC 8 cut(s) 551, 623, 624, 911, 1490, 1688, 1923, 1955
BmiI GGNNCC 7 cut(s) 129, 339, 430, 625, 1796, 1924, 2067
BmrFI CCNGG 7 cut(s) 113, 209, 1137, 1353, 1589, 1650, 1673
BmsI GCATC 2 cut(s) 827, 1068
BoxI GACNNNNGTC 1 cut(s) 60
BpiI GAAGAC 2 cut(s) 1262, 1482
BpmI CTGGAG 1 cut(s) 1632
BpuEI CTTGAG 4 cut(s) 291, 635, 1621, 1700
Bsa29I ATCGAT 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 5 cut(s) 208, 633, 1277, 1587, 1672
BsaWI WCCGGW 1 cut(s) 692
BsaXI ACNNNNNCTCC 4 cut(s) 688, 718, 2067, 2097
Bsc4I CCNNNNNNNGG 4 cut(s) 347, 713, 836, 1943
Bse1I ACTGG 3 cut(s) 924, 1057, 1104
Bse3DI GCAATG 1 cut(s) 1543
BseAI TCCGGA 1 cut(s) 692
BseBI CCWGG 7 cut(s) 113, 209, 1137, 1353, 1589, 1650, 1673
BseCI ATCGAT 1 cut(s) 531
BseDI CCNNGG 5 cut(s) 208, 633, 1277, 1587, 1672
BseGI GGATG 1 cut(s) 1059
BseLI CCNNNNNNNGG 4 cut(s) 347, 713, 836, 1943
BseMI GCAATG 1 cut(s) 1543
BseMII CTCAG 5 cut(s) 443, 849, 1433, 1494, 1649
BseNI ACTGG 3 cut(s) 924, 1057, 1104
BseRI GAGGAG 2 cut(s) 492, 976
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 4 cut(s) 740, 1916, 1954, 1966
BseYI CCCAGC 3 cut(s) 173, 394, 1492
BsgI GTGCAG 1 cut(s) 1915
BshFI GGCC 6 cut(s) 198, 625, 1491, 1671, 1690, 1956
BshNI GGYRCC 1 cut(s) 428
BshVI ATCGAT 1 cut(s) 531
BsiHKAI GWGCWC 1 cut(s) 1204
BsiSI CCGG 1 cut(s) 693
BslFI GGGAC 1 cut(s) 1936
BslI CCNNNNNNNGG 4 cut(s) 347, 713, 836, 1943
BsmAI GTCTC 3 cut(s) 183, 1463, 1650
BsmFI GGGAC 1 cut(s) 1936
BsmI GAATGC 1 cut(s) 614
BsnI GGCC 6 cut(s) 198, 625, 1491, 1671, 1690, 1956
Bso31I GGTCTC 1 cut(s) 183
Bsp120I GGGCCC 1 cut(s) 623
Bsp1286I GDGCHC 3 cut(s) 383, 627, 1204
Bsp13I TCCGGA 1 cut(s) 692
Bsp143I GATC 5 cut(s) 350, 532, 1652, 1732, 1939
Bsp19I CCATGG 1 cut(s) 1277
BspACI CCGC 3 cut(s) 311, 756, 796
BspANI GGCC 6 cut(s) 198, 625, 1491, 1671, 1690, 1956
BspCNI CTCAG 5 cut(s) 444, 848, 1434, 1493, 1650
BspDI ATCGAT 1 cut(s) 531
BspEI TCCGGA 1 cut(s) 692
BspLI GGNNCC 7 cut(s) 129, 339, 430, 625, 1796, 1924, 2067
BspMI ACCTGC 2 cut(s) 443, 1934
BspPI GGATC 2 cut(s) 358, 1660
BspQI GCTCTTC 2 cut(s) 1209, 2030
BspT107I GGYRCC 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 1543
BsrI ACTGG 3 cut(s) 924, 1057, 1104
BssECI CCNNGG 5 cut(s) 208, 633, 1277, 1587, 1672
BssMI GATC 5 cut(s) 350, 532, 1652, 1732, 1939
BssT1I CCWWGG 2 cut(s) 633, 1277
Bst2UI CCWGG 7 cut(s) 113, 209, 1137, 1353, 1589, 1650, 1673
Bst4CI ACNGT 8 cut(s) 413, 425, 1334, 1427, 1699, 1723, 2002, 2026
Bst6I CTCTTC 3 cut(s) 191, 1209, 2030
BstAPI GCANNNNNTGC 2 cut(s) 65, 435
BstC8I GCNNGC 2 cut(s) 1193, 1977
BstDEI CTNAG 6 cut(s) 452, 835, 1306, 1442, 1480, 1658
BstDSI CCRYGG 1 cut(s) 1277
BstEII GGTNACC 1 cut(s) 1282
BstENI CCTNNNNNAGG 1 cut(s) 1941
BstF5I GGATG 1 cut(s) 1059
BstH2I RGCGCY 2 cut(s) 320, 1034
BstHHI GCGC 3 cut(s) 70, 319, 1033
BstKTI GATC 5 cut(s) 353, 535, 1655, 1735, 1942
BstMAI GTCTC 3 cut(s) 183, 1463, 1650
BstMBI GATC 5 cut(s) 350, 532, 1652, 1732, 1939
BstMWI GCNNNNNNNGC 7 cut(s) 25, 65, 245, 435, 500, 611, 1976
BstNI CCWGG 7 cut(s) 113, 209, 1137, 1353, 1589, 1650, 1673
BstNSI RCATGY 2 cut(s) 63, 1979
BstPAI GACNNNNGTC 1 cut(s) 60
BstPI GGTNACC 1 cut(s) 1282
BstSCI CCNGG 7 cut(s) 111, 207, 1135, 1351, 1587, 1648, 1671
BstSFI CTRYAG 2 cut(s) 1236, 2025
BstSLI GKGCMC 1 cut(s) 627
BstV1I GCAGC 4 cut(s) 740, 1916, 1954, 1966
BstV2I GAAGAC 2 cut(s) 1262, 1482
Bsu15I ATCGAT 1 cut(s) 531
BsuI GTATCC 2 cut(s) 295, 837
BsuRI GGCC 6 cut(s) 198, 625, 1491, 1671, 1690, 1956
BsuTUI ATCGAT 1 cut(s) 531
BtgI CCRYGG 1 cut(s) 1277
BtsCI GGATG 1 cut(s) 1059
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 5 cut(s) 337, 352, 430, 970, 1655
BveI ACCTGC 2 cut(s) 443, 1934
Cac8I GCNNGC 2 cut(s) 1193, 1977
CaiI CAGNNNCTG 1 cut(s) 1099
CfoI GCGC 3 cut(s) 70, 319, 1033
Cfr13I GGNCC 8 cut(s) 551, 623, 624, 911, 1490, 1688, 1923, 1955
ClaI ATCGAT 1 cut(s) 531
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 414
CspCI CAANNNNNGTGG 2 cut(s) 1411, 1446
CviAII CATG 8 cut(s) 60, 124, 342, 564, 1153, 1278, 1383, 1976
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 6 cut(s) 452, 835, 1306, 1442, 1480, 1658
DpnI GATC 5 cut(s) 352, 534, 1654, 1734, 1941
DpnII GATC 5 cut(s) 350, 532, 1652, 1732, 1939
DrdI GACNNNNNNGTC 1 cut(s) 595
DriI GACNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 595
Eam1104I CTCTTC 3 cut(s) 191, 1209, 2030
Eam1105I GACNNNNNGTC 1 cut(s) 455
EarI CTCTTC 3 cut(s) 191, 1209, 2030
Ecl136II GAGCTC 1 cut(s) 1202
Eco130I CCWWGG 2 cut(s) 633, 1277
Eco24I GRGCYC 3 cut(s) 383, 627, 1204
Eco31I GGTCTC 1 cut(s) 183
Eco32I GATATC 2 cut(s) 970, 1780
Eco47I GGWCC 3 cut(s) 551, 911, 1923
Eco47III AGCGCT 1 cut(s) 1032
Eco53kI GAGCTC 1 cut(s) 1202
Eco57I CTGAAG 3 cut(s) 285, 1494, 1849
Eco91I GGTNACC 1 cut(s) 1282
EcoICRI GAGCTC 1 cut(s) 1202
EcoNI CCTNNNNNAGG 1 cut(s) 1941
EcoO109I RGGNCCY 2 cut(s) 551, 1923
EcoO65I GGTNACC 1 cut(s) 1282
EcoRI GAATTC 1 cut(s) 949
EcoRII CCWGG 7 cut(s) 111, 207, 1135, 1351, 1587, 1648, 1671
EcoRV GATATC 2 cut(s) 970, 1780
EcoT14I CCWWGG 2 cut(s) 633, 1277
EcoT22I ATGCAT 2 cut(s) 616, 1045
EcoT38I GRGCYC 3 cut(s) 383, 627, 1204
ErhI CCWWGG 2 cut(s) 633, 1277
FaeI CATG 8 cut(s) 63, 127, 345, 567, 1156, 1281, 1386, 1979
FaqI GGGAC 1 cut(s) 1936
FatI CATG 8 cut(s) 59, 123, 341, 563, 1152, 1277, 1382, 1975
FbaI TGATCA 1 cut(s) 1939
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 4 cut(s) 754, 1930, 1968, 1980
FokI GGATG 1 cut(s) 1046
FriOI GRGCYC 3 cut(s) 383, 627, 1204
Fsp4HI GCNGC 4 cut(s) 754, 1930, 1968, 1980
FspBI CTAG 5 cut(s) 9, 1209, 1436, 1760, 2090
GlaI GCGC 3 cut(s) 69, 318, 1032
GluI GCNGC 4 cut(s) 754, 1930, 1968, 1980
GsaI CCCAGC 3 cut(s) 177, 398, 1496
GsuI CTGGAG 1 cut(s) 1632
HaeII RGCGCY 2 cut(s) 320, 1034
HaeIII GGCC 6 cut(s) 198, 625, 1491, 1671, 1690, 1956
HapII CCGG 1 cut(s) 693
HgaI GACGC 1 cut(s) 65
HhaI GCGC 3 cut(s) 70, 319, 1033
Hin1II CATG 8 cut(s) 63, 127, 345, 567, 1156, 1281, 1386, 1979
Hin6I GCGC 3 cut(s) 68, 317, 1031
HinP1I GCGC 3 cut(s) 68, 317, 1031
HincII GTYRAC 1 cut(s) 1130
HindII GTYRAC 1 cut(s) 1130
HindIII AAGCTT 1 cut(s) 728
HinfI GANTC 6 cut(s) 12, 456, 759, 960, 1478, 1564
HpaII CCGG 1 cut(s) 693
HphI GGTGA 2 cut(s) 779, 1324
Hpy166II GTNNAC 4 cut(s) 40, 1130, 1315, 1433
Hpy188III TCNNGA 9 cut(s) 523, 693, 707, 837, 992, 1263, 1630, 1679, 1892
Hpy8I GTNNAC 4 cut(s) 40, 1130, 1315, 1433
Hpy99I CGWCG 1 cut(s) 59
HpyCH4III ACNGT 8 cut(s) 413, 425, 1334, 1427, 1699, 1723, 2002, 2026
HpyCH4IV ACGT 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 7 cut(s) 25, 65, 245, 435, 500, 611, 1976
HpyF3I CTNAG 6 cut(s) 452, 835, 1306, 1442, 1480, 1658
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 8 cut(s) 63, 127, 345, 567, 1156, 1281, 1386, 1979
HspAI GCGC 3 cut(s) 68, 317, 1031
Kpn2I TCCGGA 1 cut(s) 692
Ksp22I TGATCA 1 cut(s) 1939
Kzo9I GATC 5 cut(s) 350, 532, 1652, 1732, 1939
LguI GCTCTTC 2 cut(s) 1209, 2030
LmnI GCTCC 5 cut(s) 133, 337, 637, 989, 1199
Lsp1109I GCAGC 4 cut(s) 740, 1916, 1954, 1966
LweI GCATC 2 cut(s) 827, 1068
MaeI CTAG 5 cut(s) 9, 1209, 1436, 1760, 2090
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 5 cut(s) 212, 1282, 1293, 1507, 1612
MalI GATC 5 cut(s) 352, 534, 1654, 1734, 1941
MboI GATC 5 cut(s) 350, 532, 1652, 1732, 1939
MboII GAAGA 8 cut(s) 178, 1024, 1196, 1220, 1262, 1340, 1487, 2047
MfeI CAATTG 1 cut(s) 600
MhlI GDGCHC 3 cut(s) 383, 627, 1204
MlyI GAGTC 3 cut(s) 465, 753, 1472
MmeI TCCRAC 1 cut(s) 2053
Mph1103I ATGCAT 2 cut(s) 616, 1045
MroI TCCGGA 1 cut(s) 692
MroXI GAANNNNTTC 3 cut(s) 542, 1319, 1862
MspA1I CMGCKG 2 cut(s) 753, 1300
MspI CCGG 1 cut(s) 693
MspR9I CCNGG 7 cut(s) 113, 209, 1137, 1353, 1589, 1650, 1673
MunI CAATTG 1 cut(s) 600
Mva1269I GAATGC 1 cut(s) 614
MvaI CCWGG 7 cut(s) 113, 209, 1137, 1353, 1589, 1650, 1673
MwoI GCNNNNNNNGC 7 cut(s) 25, 65, 245, 435, 500, 611, 1976
NcoI CCATGG 1 cut(s) 1277
NdeII GATC 5 cut(s) 350, 532, 1652, 1732, 1939
NlaIII CATG 8 cut(s) 63, 127, 345, 567, 1156, 1281, 1386, 1979
NlaIV GGNNCC 7 cut(s) 129, 339, 430, 625, 1796, 1924, 2067
NmuCI GTSAC 2 cut(s) 1293, 1612
NsiI ATGCAT 2 cut(s) 616, 1045
NspI RCATGY 2 cut(s) 63, 1979
PaeI GCATGC 1 cut(s) 1979
PaqCI CACCTGC 1 cut(s) 443
PciSI GCTCTTC 2 cut(s) 1209, 2030
PctI GAATGC 1 cut(s) 614
PdmI GAANNNNTTC 3 cut(s) 542, 1319, 1862
PfeI GAWTC 3 cut(s) 12, 960, 1564
PflMI CCANNNNNTGG 1 cut(s) 347
PfoI TCCNGGA 2 cut(s) 1351, 1648
PkrI GCNGC 4 cut(s) 755, 1931, 1969, 1981
PleI GAGTC 3 cut(s) 464, 753, 1472
PpsI GAGTC 3 cut(s) 464, 753, 1472
PpuMI RGGWCCY 2 cut(s) 551, 1923
PshAI GACNNNNGTC 1 cut(s) 60
PshBI ATTAAT 1 cut(s) 1046
PsiI TTATAA 1 cut(s) 2096
Psp124BI GAGCTC 1 cut(s) 1204
Psp5II RGGWCCY 2 cut(s) 551, 1923
Psp6I CCWGG 7 cut(s) 111, 207, 1135, 1351, 1587, 1648, 1671
PspEI GGTNACC 1 cut(s) 1282
PspFI CCCAGC 3 cut(s) 173, 394, 1492
PspGI CCWGG 7 cut(s) 111, 207, 1135, 1351, 1587, 1648, 1671
PspN4I GGNNCC 7 cut(s) 129, 339, 430, 625, 1796, 1924, 2067
PspOMI GGGCCC 1 cut(s) 623
PspPI GGNCC 8 cut(s) 551, 623, 624, 911, 1490, 1688, 1923, 1955
PspPPI RGGWCCY 2 cut(s) 551, 1923
PstNI CAGNNNCTG 1 cut(s) 1099
PvuII CAGCTG 2 cut(s) 753, 1300
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SacI GAGCTC 1 cut(s) 1204
SapI GCTCTTC 2 cut(s) 1209, 2030
SatI GCNGC 4 cut(s) 754, 1930, 1968, 1980
Sau3AI GATC 5 cut(s) 350, 532, 1652, 1732, 1939
Sau96I GGNCC 8 cut(s) 551, 623, 624, 911, 1490, 1688, 1923, 1955
SchI GAGTC 3 cut(s) 465, 753, 1472
ScrFI CCNGG 7 cut(s) 113, 209, 1137, 1353, 1589, 1650, 1673
SduI GDGCHC 3 cut(s) 383, 627, 1204
SfaNI GCATC 2 cut(s) 827, 1068
SfcI CTRYAG 2 cut(s) 1236, 2025
SinI GGWCC 3 cut(s) 551, 911, 1923
SmlI CTYRAG 4 cut(s) 306, 650, 1636, 1679
SmoI CTYRAG 4 cut(s) 306, 650, 1636, 1679
SphI GCATGC 1 cut(s) 1979
SsiI CCGC 3 cut(s) 311, 756, 796
SspI AATATT 1 cut(s) 288
SspMI CTAG 5 cut(s) 9, 1209, 1436, 1760, 2090
SstI GAGCTC 1 cut(s) 1204
StyD4I CCNGG 7 cut(s) 111, 207, 1135, 1351, 1587, 1648, 1671
StyI CCWWGG 2 cut(s) 633, 1277
TaaI ACNGT 8 cut(s) 413, 425, 1334, 1427, 1699, 1723, 2002, 2026
TaiI ACGT 1 cut(s) 36
TaqI TCGA 3 cut(s) 271, 531, 1728
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 3 cut(s) 12, 960, 1564
TscAI CASTG 5 cut(s) 337, 352, 430, 970, 1662
TseFI GTSAC 2 cut(s) 1293, 1612
TseI GCWGC 4 cut(s) 753, 1929, 1967, 1979
Tsp45I GTSAC 2 cut(s) 1293, 1612
TspDTI ATGAA 4 cut(s) 844, 988, 1889, 2048
TspRI CASTG 5 cut(s) 337, 352, 430, 970, 1662
Van91I CCANNNNNTGG 1 cut(s) 347
VpaK11BI GGWCC 3 cut(s) 551, 911, 1923
VspI ATTAAT 1 cut(s) 1046
XagI CCTNNNNNAGG 1 cut(s) 1941
XapI RAATTY 8 cut(s) 371, 771, 949, 1006, 1087, 1375, 1412, 1896
XceI RCATGY 2 cut(s) 63, 1979
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 39
XmnI GAANNNNTTC 3 cut(s) 542, 1319, 1862
XspI CTAG 5 cut(s) 9, 1209, 1436, 1760, 2090
Zsp2I ATGCAT 2 cut(s) 616, 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.