Rh5AG138300

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
14325958 .. 14332248
6291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG138300.1

Sequence Viewer

Length: 684 bp
ATGGTGCCTTGGTGGTCCATCGCACTCATGCGCACTGGATTCTTGCTTAAAATGGCTATACGTTTTCCCAGTTGGCAACTACCTATGAATTTGAGAATGAAGCAGCAACCATCTCTTTCAGTCTTCTTGTTCTGCTTCTGCTTCCTGGGTTCCACTTGGTTTCAAGTTTCCACGGCTGAAAATGCCACTACTGACCCATCTGAAGATGCAAAATTCTCAATCAACTGTGGTGGGCTCGAACTGAGAGGGAGTGATGACATATTGTATGAGACTGAAGACTCAGCTCTTGGCCCAGCAACGTTTAATGTAACAAGTTCAGAGAAATGGGCTGTTAGCAATGTGGGTTTGTTTGCTGAAAGAAAGAATCCGAGCTTTGTGGTAAATACCCTGGCACAGGTCACTGGGACAGATGTGACCCCAGAGCTTTTCCAGACCTCAAGGTTGTCTCCAGGATCACTGAGATACTATGGCCTGGGTCTTGAGAATGGGCCTTATACTGTAAAATTGCAATTTGCAGAAACAGTTTTCGATGATCGTGCCTTGCAAACTTGGAAAAGTCTAGGACGGCATTTTACACCAACTGTTTCTGGTGTTCCAGCAACTACTCTAGGAATGAAGAGCTGGACAGGGCTGATGGGTATTCTGGTTCCTGTTGGAGTTTTGGTGTTGCTAGTTATAATTTGA

Protein Analysis

227

Amino Acids

25.05

Weight (kDa)

5.86

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 72 - 178 2e-14 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 677
Acc16I TGCGCA 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 4
AclI AACGTT 1 cut(s) 299
AclWI GGATC 1 cut(s) 460
AcsI RAATTY 2 cut(s) 88, 212
AcuI CTGAAG 2 cut(s) 222, 294
AfiI CCNNNNNNNGG 1 cut(s) 394
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 4 cut(s) 144, 387, 448, 471
AluBI AGCT 4 cut(s) 284, 372, 424, 621
AluI AGCT 4 cut(s) 284, 372, 424, 621
Alw26I GTCTC 2 cut(s) 263, 450
AlwI GGATC 1 cut(s) 460
AoxI GGCC 3 cut(s) 289, 469, 488
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 2 cut(s) 88, 212
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 3 cut(s) 15, 290, 488
AvaII GGWCC 1 cut(s) 15
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 2 cut(s) 115, 282
BbvI GCAGC 1 cut(s) 115
BccI CCATC 4 cut(s) 26, 118, 205, 628
BceAI ACGGC 2 cut(s) 189, 581
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 4 cut(s) 146, 389, 450, 473
BcoDI GTCTC 2 cut(s) 263, 450
BfaI CTAG 3 cut(s) 560, 608, 671
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 4 cut(s) 146, 389, 450, 473
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 3 cut(s) 15, 290, 488
BmiI GGNNCC 3 cut(s) 6, 151, 648
BmrFI CCNGG 4 cut(s) 146, 389, 450, 473
BmrI ACTGGG 2 cut(s) 63, 411
BmsI GCATC 1 cut(s) 196
BmuI ACTGGG 2 cut(s) 63, 411
BpiI GAAGAC 2 cut(s) 115, 282
BpmI CTGGAG 1 cut(s) 432
BpuEI CTTGAG 2 cut(s) 421, 500
BsaJI CCNNGG 5 cut(s) 8, 145, 171, 387, 472
BsaXI ACNNNNNCTCC 2 cut(s) 648, 678
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse1I ACTGG 3 cut(s) 40, 69, 406
Bse3DI GCAATG 1 cut(s) 343
BseBI CCWGG 4 cut(s) 146, 389, 450, 473
BseDI CCNNGG 5 cut(s) 8, 145, 171, 387, 472
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 3 cut(s) 233, 294, 449
BseNI ACTGG 3 cut(s) 40, 69, 406
BseXI GCAGC 1 cut(s) 115
BseYI CCCAGC 1 cut(s) 292
BshFI GGCC 3 cut(s) 291, 471, 490
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 2 cut(s) 263, 450
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 3 cut(s) 291, 471, 490
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 452, 532
BspANI GGCC 3 cut(s) 291, 471, 490
BspCNI CTCAG 3 cut(s) 234, 293, 450
BspLI GGNNCC 3 cut(s) 6, 151, 648
BspPI GGATC 1 cut(s) 460
BspQI GCTCTTC 1 cut(s) 611
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 3 cut(s) 40, 69, 406
BssECI CCNNGG 5 cut(s) 8, 145, 171, 387, 472
BssMI GATC 2 cut(s) 452, 532
BssT1I CCWWGG 1 cut(s) 8
Bst2UI CCWGG 4 cut(s) 146, 389, 450, 473
Bst4CI ACNGT 4 cut(s) 227, 499, 523, 583
Bst6I CTCTTC 1 cut(s) 611
BstDEI CTNAG 3 cut(s) 242, 280, 458
BstDSI CCRYGG 1 cut(s) 171
BstENI CCTNNNNNAGG 1 cut(s) 392
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 2 cut(s) 455, 535
BstMAI GTCTC 2 cut(s) 263, 450
BstMBI GATC 2 cut(s) 452, 532
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 4 cut(s) 146, 389, 450, 473
BstSCI CCNGG 4 cut(s) 144, 387, 448, 471
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 2 cut(s) 115, 282
BsuRI GGCC 3 cut(s) 291, 471, 490
BtgI CCRYGG 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 4
BtsIMutI CAGTG 3 cut(s) 33, 399, 455
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 3 cut(s) 15, 290, 488
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviAII CATG 1 cut(s) 28
DdeI CTNAG 3 cut(s) 242, 280, 458
DpnI GATC 2 cut(s) 454, 534
DpnII GATC 2 cut(s) 452, 532
Eam1104I CTCTTC 1 cut(s) 611
EarI CTCTTC 1 cut(s) 611
Eco130I CCWWGG 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 15
Eco57I CTGAAG 2 cut(s) 222, 294
EcoNI CCTNNNNNAGG 1 cut(s) 392
EcoRII CCWGG 4 cut(s) 144, 387, 448, 471
EcoT14I CCWWGG 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 1 cut(s) 31
FaiI YATR 8 cut(s) 29, 59, 86, 260, 267, 468, 495, 677
FaqI GGGAC 1 cut(s) 418
FatI CATG 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 104
FspAI RTGCGCAY 1 cut(s) 32
FspBI CTAG 3 cut(s) 560, 608, 671
FspI TGCGCA 1 cut(s) 32
GlaI GCGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 104
GsaI CCCAGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 3 cut(s) 291, 471, 490
HhaI GCGC 1 cut(s) 33
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 3 cut(s) 39, 278, 364
Hpy188I TCNGA 3 cut(s) 202, 319, 369
Hpy188III TCNNGA 2 cut(s) 430, 479
HpyCH4III ACNGT 4 cut(s) 227, 499, 523, 583
HpyCH4IV ACGT 2 cut(s) 61, 299
HpyCH4V TGCA 4 cut(s) 209, 508, 515, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 3 cut(s) 242, 280, 458
HpySE526I ACGT 2 cut(s) 61, 299
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 452, 532
LguI GCTCTTC 1 cut(s) 611
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 196
MaeI CTAG 3 cut(s) 560, 608, 671
MaeII ACGT 2 cut(s) 61, 299
MaeIII GTNAC 3 cut(s) 307, 397, 412
MalI GATC 2 cut(s) 454, 534
MboI GATC 2 cut(s) 452, 532
MboII GAAGA 4 cut(s) 115, 215, 287, 628
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 5 cut(s) 88, 212, 503, 509, 678
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 634
MnlI CCTC 2 cut(s) 239, 445
MseI TTAA 2 cut(s) 48, 303
MspR9I CCNGG 4 cut(s) 146, 389, 450, 473
MvaI CCWGG 4 cut(s) 146, 389, 450, 473
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 2 cut(s) 452, 532
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 3 cut(s) 6, 151, 648
NmuCI GTSAC 2 cut(s) 397, 412
NsbI TGCGCA 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 611
PfeI GAWTC 2 cut(s) 39, 364
PfoI TCCNGGA 1 cut(s) 448
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PsiI TTATAA 1 cut(s) 677
Psp1406I AACGTT 1 cut(s) 299
Psp6I CCWGG 4 cut(s) 144, 387, 448, 471
PspFI CCCAGC 1 cut(s) 292
PspGI CCWGG 4 cut(s) 144, 387, 448, 471
PspN4I GGNNCC 3 cut(s) 6, 151, 648
PspPI GGNCC 3 cut(s) 15, 290, 488
SapI GCTCTTC 1 cut(s) 611
SaqAI TTAA 2 cut(s) 48, 303
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 2 cut(s) 452, 532
Sau96I GGNCC 3 cut(s) 15, 290, 488
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 4 cut(s) 146, 389, 450, 473
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 436, 479
SmoI CTYRAG 2 cut(s) 436, 479
Sse9I AATT 5 cut(s) 88, 212, 503, 509, 678
SspMI CTAG 3 cut(s) 560, 608, 671
StyD4I CCNGG 4 cut(s) 144, 387, 448, 471
StyI CCWWGG 1 cut(s) 8
TaaI ACNGT 4 cut(s) 227, 499, 523, 583
TaiI ACGT 2 cut(s) 64, 302
TaqI TCGA 2 cut(s) 237, 528
TasI AATT 5 cut(s) 88, 212, 503, 509, 678
TfiI GAWTC 2 cut(s) 39, 364
Tru1I TTAA 2 cut(s) 48, 303
Tru9I TTAA 2 cut(s) 48, 303
TscAI CASTG 3 cut(s) 40, 406, 462
TseFI GTSAC 2 cut(s) 397, 412
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 2 cut(s) 397, 412
TspDTI ATGAA 3 cut(s) 101, 113, 629
TspRI CASTG 3 cut(s) 40, 406, 462
VpaK11BI GGWCC 1 cut(s) 15
XagI CCTNNNNNAGG 1 cut(s) 392
XapI RAATTY 2 cut(s) 88, 212
XspI CTAG 3 cut(s) 560, 608, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.