Rroxscaffold_1G00073910

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
94804325 .. 94821285
16961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00073910.1

Sequence Viewer

Length: 2007 bp
ATGAATTCTCTACGAATCAGTGATCTCTATAATGTGAGCTCCTCTCTTGACTTCATAAGGAATTTGAAGAACTTGACTGATTTAGCTCTCCGAAATGCATTAGTCACTGGCCGCATCCCTTCTGATATTAGAGAATATCAAAGTTTAAATATACTGGATTTGAGTTTCAACAATATAACAGGTCAACTTCCAAGTGACTTGTTCAACATGAGTTCTCTCACATCCTTATTTCTTGGAAATAATAGTTTGTCTGGAGTTCTGCCTAGCCAAAAGAGTGATCGTCTTCAAACCATAGATTTATCTTATAACTATTTATCAGGAAGTCTTCCCCCATGGGTAACCGCAATATCGCAACTGAACTTGGTGGTCAACAACTTCACTTTTAACGAAAGTTCAGAAATAACGCTTCCTGGATTGAATTGCCTTCAAAGAAATTTTCCTTGCAATAGAAATCCCCCACGCTATGCAAACTTCTCAATCAACTGCGGAGGACCAGACATGAGAGGAAGTGATGGCATATTATATGAGGCAGAAAACTCAACTCTTGGCCCAGCAACATATAATGTAACCAGTACAGAGAAATGGGCTGTTAGCAATGTGGGTTTGTTTGCTGAGAGAAAGAATCCAAGCTATTTGCTACCCTCCCTGGATCAGGTTACTGGGTCGGATGTGACCCCAGAGCTTTTCCAGACTTCAAGATTATCTCCAGGATCACTGAGATACTATGGCTTGGGTCTCCAGAATGGACCTTATACTGTAAAATTACAATTTGCAGAAATGGTTTTTGATGATCGTGAATCACAAACTTGGAAAAGTTTAGGAAGGCGAGTATTTGATATCTATATTCAGGGGCATCTAGAAGTGAAGGACTTTGACATATCCAAGGAGGCAGGTGGTGTTTTAAGAGTAGCAACGAGAAACTTCAATGTAAACGTGTCGGACAATTATGTTGAAATTCATTTGTTCTGGGCTGGTAAGGGGACCTGCTGCATACCTAATCAAGGTGATTACGGTCCACTAATATCAACGGTCAATGCTGTTCCAGATTTTAAACCAACTGTTTCTGGGATTCCACCAGCTACTCCAGGAAAGAAGAGCATGACAGGGGTGATTGTTGGCGTTGCAGTCTCTGTCGGAGTTGTGAGCTTGCTATTAATATTTGCAGTTTTATATTTGAGGAGAAAAATACCAGACAAAGATGACGATGAAGAACTTCAAGGATTAGACCCGCGACCAAATACATTCAGTTATAGTGAGTTAAAAGCTGCAACAGGGGATTTTAATCTTTCAAATAAACTAGGGGAGGGAGGATATGGCGCCGTTTACAAGGGCATACTTTCTGAAGCGAGGTTAGTGGCTGTGAAGCAACTTTCAGTAGCATCTCACCAAGGGAAGAGTCAATTTGCAGCAGAAATTGCTGCCATATCTGCAGTGCAACATCGCAATCTAGTGAAACTGTTTGGATGCTGTGTCGAAGGAAACCAGCGAATTTTGGTTTATGAATATCTTGAAAACAAGAGCCTTGATCAGGCACTTTTTGGAAACAACTTGCGTCTTGACTGGCATACCAGATTCAATATCTTGTTGGGAACAGCAAGAGGACTTGCCTATCTTCATGAGGAATCGAGGCCAAGGATAGTACATAGAGATGTCAAAGCCAGTAATATTTTGCTTGATGCAGACCTCTCCCCAAAAATATCAGATTTTGGACTGGCAAAGCTTTATGATGATGAGAAAACCCACATCAGCACCCGAGTTGCAGGGACAATAGGCTATTTGGCACCGGAGTATGCAATGCGGGGACATCTGACTGAAAAGCTGATGTATTCGGTTTTGGAGTTGTCATTTTGGAAACTCTTAGTGGGAGACCGAACACCGACAATGACTTGGATGCCGGAGAGATTTATCTCCTTGATTGGGCATGGACTTTACATGAAAAAAATGAGCGTTTGGGGCTTGTGGATCCGAGACCGACCGACTTTGATGAAGAAGAAGCAAATAGATTGA

Protein Analysis

668

Amino Acids

74.28

Weight (kDa)

7.99

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 4 - 82 9.5e-06 Leucine-rich repeat region
Malectin PF11721 158 - 342 1e-40 Malectin domain
Pkinase PF00069 428 - 604 2.3e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 428 - 643 3.2e-36 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
AarI CACCTGC 1 cut(s) 881
Acc36I ACCTGC 2 cut(s) 881, 992
AccB1I GGYRCC 2 cut(s) 1316, 1780
AccII CGCG 1 cut(s) 1231
AciI CCGC 5 cut(s) 112, 342, 486, 1229, 1798
AclWI GGATC 4 cut(s) 657, 718, 1957, 1970
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 5 cut(s) 4, 61, 433, 954, 1488
AcuI CTGAAG 1 cut(s) 1362
AcyI GRCGYC 1 cut(s) 1317
AfaI GTAC 2 cut(s) 574, 1641
AfiI CCNNNNNNNGG 4 cut(s) 652, 1001, 1528, 1917
AflIII ACRYGT 1 cut(s) 933
AjnI CCWGG 4 cut(s) 409, 645, 706, 1084
AluBI AGCT 9 cut(s) 39, 86, 630, 682, 1079, 1146, 1265, 1720, 1819
AluI AGCT 9 cut(s) 39, 86, 630, 682, 1079, 1146, 1265, 1720, 1819
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 4 cut(s) 740, 1132, 1860, 1962
AlwI GGATC 4 cut(s) 657, 718, 1957, 1970
AlwNI CAGNNNCTG 1 cut(s) 1130
Ama87I CYCGRG 1 cut(s) 1752
AoxI GGCC 3 cut(s) 109, 547, 1628
ApeKI GCWGC 4 cut(s) 987, 1265, 1406, 1418
ApoI RAATTY 5 cut(s) 4, 61, 433, 954, 1488
AseI ATTAAT 1 cut(s) 1154
Asp700I GAANNNNTTC 1 cut(s) 1212
AspLEI GCGC 1 cut(s) 1319
AspS9I GGNCC 5 cut(s) 491, 548, 746, 981, 1013
AsuHPI GGTGA 3 cut(s) 1016, 1120, 1376
AvaI CYCGRG 1 cut(s) 1752
AvaII GGWCC 4 cut(s) 491, 746, 981, 1013
BamHI GGATCC 1 cut(s) 1962
BanI GGYRCC 2 cut(s) 1316, 1780
BanII GRGCYC 1 cut(s) 41
BbsI GAAGAC 2 cut(s) 275, 317
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 4 cut(s) 974, 1252, 1405, 1418
BccI CCATC 1 cut(s) 506
BceAI ACGGC 1 cut(s) 1304
BciT130I CCWGG 4 cut(s) 411, 647, 708, 1086
BclI TGATCA 1 cut(s) 1525
BcoDI GTCTC 4 cut(s) 740, 1132, 1860, 1962
BfaI CTAG 4 cut(s) 264, 857, 1298, 1448
BfmI CTRYAG 1 cut(s) 1428
BfoI RGCGCY 1 cut(s) 1320
BfuAI ACCTGC 2 cut(s) 881, 992
BisI GCNGC 5 cut(s) 112, 988, 1266, 1407, 1419
BlsI GCNGC 5 cut(s) 113, 989, 1267, 1408, 1420
Bme1390I CCNGG 4 cut(s) 411, 647, 708, 1086
Bme18I GGWCC 4 cut(s) 491, 746, 981, 1013
BmeT110I CYCGRG 1 cut(s) 1752
BmgT120I GGNCC 5 cut(s) 491, 548, 746, 981, 1013
BmiI GGNNCC 4 cut(s) 982, 1318, 1782, 1964
BmrFI CCNGG 4 cut(s) 411, 647, 708, 1086
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 6 cut(s) 123, 862, 1388, 1454, 1666, 1881
BmuI ACTGGG 1 cut(s) 669
BpiI GAAGAC 2 cut(s) 275, 317
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BpmI CTGGAG 4 cut(s) 273, 690, 722, 1068
BsaBI GATNNNNATC 1 cut(s) 1281
BsaHI GRCGYC 1 cut(s) 1317
BsaI GGTCTC 3 cut(s) 740, 1860, 1962
BsaJI CCNNGG 5 cut(s) 332, 645, 882, 1387, 1631
BsaWI WCCGGW 1 cut(s) 1783
Bsc4I CCNNNNNNNGG 4 cut(s) 652, 1001, 1528, 1917
Bse1I ACTGG 7 cut(s) 112, 159, 570, 664, 1565, 1659, 1716
Bse3DI GCAATG 2 cut(s) 601, 1800
Bse8I GATNNNNATC 1 cut(s) 1281
BseBI CCWGG 4 cut(s) 411, 647, 708, 1086
BseDI CCNNGG 5 cut(s) 332, 645, 882, 1387, 1631
BseGI GGATG 5 cut(s) 114, 221, 673, 1469, 1896
BseJI GATNNNNATC 1 cut(s) 1281
BseLI CCNNNNNNNGG 4 cut(s) 652, 1001, 1528, 1917
BseMI GCAATG 2 cut(s) 601, 1800
BseMII CTCAG 2 cut(s) 603, 707
BseNI ACTGG 7 cut(s) 112, 159, 570, 664, 1565, 1659, 1716
BseRI GAGGAG 2 cut(s) 31, 1192
BseXI GCAGC 4 cut(s) 974, 1252, 1405, 1418
BseYI CCCAGC 1 cut(s) 550
Bsh1236I CGCG 1 cut(s) 1231
Bsh1285I CGRYCG 1 cut(s) 1976
BshFI GGCC 3 cut(s) 111, 549, 1630
BshNI GGYRCC 2 cut(s) 1316, 1780
BsiEI CGRYCG 1 cut(s) 1976
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 1752
BsiSI CCGG 2 cut(s) 1784, 1895
BslFI GGGAC 3 cut(s) 994, 1777, 1815
BslI CCNNNNNNNGG 4 cut(s) 652, 1001, 1528, 1917
BsmAI GTCTC 4 cut(s) 740, 1132, 1860, 1962
BsmFI GGGAC 3 cut(s) 994, 1777, 1815
BsnI GGCC 3 cut(s) 111, 549, 1630
Bso31I GGTCTC 3 cut(s) 740, 1860, 1962
BsoBI CYCGRG 1 cut(s) 1752
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 7 cut(s) 22, 277, 649, 710, 790, 1525, 1962
Bsp19I CCATGG 1 cut(s) 332
BspACI CCGC 5 cut(s) 112, 342, 486, 1229, 1798
BspANI GGCC 3 cut(s) 111, 549, 1630
BspCNI CTCAG 2 cut(s) 604, 708
BspFNI CGCG 1 cut(s) 1231
BspHI TCATGA 1 cut(s) 1615
BspLI GGNNCC 4 cut(s) 982, 1318, 1782, 1964
BspMAI CTGCAG 1 cut(s) 1432
BspMI ACCTGC 2 cut(s) 881, 992
BspPI GGATC 4 cut(s) 657, 718, 1957, 1970
BspQI GCTCTTC 1 cut(s) 1088
BspT107I GGYRCC 2 cut(s) 1316, 1780
BspTNI GGTCTC 3 cut(s) 740, 1860, 1962
BsrDI GCAATG 2 cut(s) 601, 1800
BsrI ACTGG 7 cut(s) 112, 159, 570, 664, 1565, 1659, 1716
BssECI CCNNGG 5 cut(s) 332, 645, 882, 1387, 1631
BssMI GATC 7 cut(s) 22, 277, 649, 710, 790, 1525, 1962
BssNI GRCGYC 1 cut(s) 1317
BssT1I CCWWGG 4 cut(s) 332, 882, 1387, 1631
Bst2UI CCWGG 4 cut(s) 411, 647, 708, 1086
Bst4CI ACNGT 5 cut(s) 757, 1013, 1030, 1060, 1458
Bst6I CTCTTC 2 cut(s) 1088, 1388
BstACI GRCGYC 1 cut(s) 1317
BstAPI GCANNNNNTGC 1 cut(s) 1415
BstC8I GCNNGC 1 cut(s) 1148
BstDEI CTNAG 3 cut(s) 612, 716, 1858
BstDSI CCRYGG 1 cut(s) 332
BstEII GGTNACC 1 cut(s) 337
BstENI CCTNNNNNAGG 3 cut(s) 650, 999, 1526
BstF5I GGATG 5 cut(s) 114, 221, 673, 1469, 1896
BstFNI CGCG 1 cut(s) 1231
BstH2I RGCGCY 1 cut(s) 1320
BstHHI GCGC 1 cut(s) 1319
BstKTI GATC 7 cut(s) 25, 280, 652, 713, 793, 1528, 1965
BstMAI GTCTC 4 cut(s) 740, 1132, 1860, 1962
BstMBI GATC 7 cut(s) 22, 277, 649, 710, 790, 1525, 1962
BstMCI CGRYCG 1 cut(s) 1976
BstMWI GCNNNNNNNGC 3 cut(s) 1415, 1427, 1953
BstNI CCWGG 4 cut(s) 411, 647, 708, 1086
BstPI GGTNACC 1 cut(s) 337
BstSCI CCNGG 4 cut(s) 409, 645, 706, 1084
BstSFI CTRYAG 1 cut(s) 1428
BstUI CGCG 1 cut(s) 1231
BstV1I GCAGC 4 cut(s) 974, 1252, 1405, 1418
BstV2I GAAGAC 2 cut(s) 275, 317
BstX2I RGATCY 1 cut(s) 1962
BstYI RGATCY 1 cut(s) 1962
BsuRI GGCC 3 cut(s) 111, 549, 1630
BtgI CCRYGG 1 cut(s) 332
BtgZI GCGATG 1 cut(s) 1424
BtsCI GGATG 5 cut(s) 114, 221, 673, 1469, 1896
BtsI GCAGTG 1 cut(s) 1437
BtsIMutI CAGTG 4 cut(s) 25, 105, 713, 1437
BveI ACCTGC 2 cut(s) 881, 992
Cac8I GCNNGC 1 cut(s) 1148
CaiI CAGNNNCTG 1 cut(s) 1130
CciI TCATGA 1 cut(s) 1615
CfoI GCGC 1 cut(s) 1319
Cfr13I GGNCC 5 cut(s) 491, 548, 746, 981, 1013
CseI GACGC 1 cut(s) 1541
Csp6I GTAC 2 cut(s) 573, 1640
CviAII CATG 7 cut(s) 208, 333, 499, 1099, 1616, 1922, 1933
CviQI GTAC 2 cut(s) 573, 1640
DdeI CTNAG 3 cut(s) 612, 716, 1858
DinI GGCGCC 1 cut(s) 1318
DpnI GATC 7 cut(s) 24, 279, 651, 712, 792, 1527, 1964
DpnII GATC 7 cut(s) 22, 277, 649, 710, 790, 1525, 1962
DraI TTTAAA 2 cut(s) 147, 1051
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 1088, 1388
EarI CTCTTC 2 cut(s) 1088, 1388
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 4 cut(s) 332, 882, 1387, 1631
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 3 cut(s) 740, 1860, 1962
Eco32I GATATC 1 cut(s) 838
Eco47I GGWCC 4 cut(s) 491, 746, 981, 1013
Eco53kI GAGCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 1362
Eco88I CYCGRG 1 cut(s) 1752
Eco91I GGTNACC 1 cut(s) 337
EcoICRI GAGCTC 1 cut(s) 39
EcoNI CCTNNNNNAGG 3 cut(s) 650, 999, 1526
EcoO109I RGGNCCY 1 cut(s) 981
EcoO65I GGTNACC 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 4 cut(s) 409, 645, 706, 1084
EcoRV GATATC 1 cut(s) 838
EcoT14I CCWWGG 4 cut(s) 332, 882, 1387, 1631
EcoT22I ATGCAT 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 41
EgeI GGCGCC 1 cut(s) 1318
EheI GGCGCC 1 cut(s) 1318
ErhI CCWWGG 4 cut(s) 332, 882, 1387, 1631
FaeI CATG 7 cut(s) 211, 336, 502, 1102, 1619, 1925, 1936
FaqI GGGAC 3 cut(s) 994, 1777, 1815
FatI CATG 7 cut(s) 207, 332, 498, 1098, 1615, 1921, 1932
FauI CCCGC 2 cut(s) 1236, 1791
FbaI TGATCA 1 cut(s) 1525
Fnu4HI GCNGC 5 cut(s) 112, 988, 1266, 1407, 1419
FokI GGATG 5 cut(s) 101, 208, 680, 1476, 1903
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 5 cut(s) 112, 988, 1266, 1407, 1419
FspBI CTAG 4 cut(s) 264, 857, 1298, 1448
GlaI GCGC 1 cut(s) 1318
GluI GCNGC 5 cut(s) 112, 988, 1266, 1407, 1419
GsaI CCCAGC 1 cut(s) 554
GsuI CTGGAG 4 cut(s) 273, 690, 722, 1068
HaeII RGCGCY 1 cut(s) 1320
HaeIII GGCC 3 cut(s) 111, 549, 1630
HapII CCGG 2 cut(s) 1784, 1895
HgaI GACGC 1 cut(s) 1541
HhaI GCGC 1 cut(s) 1319
Hin1I GRCGYC 1 cut(s) 1317
Hin1II CATG 7 cut(s) 211, 336, 502, 1102, 1619, 1925, 1936
Hin6I GCGC 1 cut(s) 1317
HinP1I GCGC 1 cut(s) 1317
HincII GTYRAC 2 cut(s) 185, 370
HindII GTYRAC 2 cut(s) 185, 370
HindIII AAGCTT 1 cut(s) 1718
HinfI GANTC 7 cut(s) 15, 622, 797, 1069, 1396, 1572, 1622
HpaII CCGG 2 cut(s) 1784, 1895
HphI GGTGA 3 cut(s) 1016, 1120, 1376
Hpy166II GTNNAC 5 cut(s) 185, 370, 931, 1016, 1324
Hpy8I GTNNAC 5 cut(s) 185, 370, 931, 1016, 1324
HpyAV CCTTC 5 cut(s) 129, 434, 816, 859, 1469
HpyCH4III ACNGT 5 cut(s) 757, 1013, 1030, 1060, 1458
HpyCH4IV ACGT 1 cut(s) 933
HpyF10VI GCNNNNNNNGC 3 cut(s) 1415, 1427, 1953
HpyF3I CTNAG 3 cut(s) 612, 716, 1858
HpySE526I ACGT 1 cut(s) 933
Hsp92I GRCGYC 1 cut(s) 1317
Hsp92II CATG 7 cut(s) 211, 336, 502, 1102, 1619, 1925, 1936
HspAI GCGC 1 cut(s) 1317
KasI GGCGCC 1 cut(s) 1316
Ksp22I TGATCA 1 cut(s) 1525
Kzo9I GATC 7 cut(s) 22, 277, 649, 710, 790, 1525, 1962
LguI GCTCTTC 1 cut(s) 1088
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 4 cut(s) 974, 1252, 1405, 1418
LweI GCATC 6 cut(s) 123, 862, 1388, 1454, 1666, 1881
MaeI CTAG 4 cut(s) 264, 857, 1298, 1448
MaeII ACGT 1 cut(s) 933
MaeIII GTNAC 6 cut(s) 103, 194, 337, 565, 655, 670
MalI GATC 7 cut(s) 24, 279, 651, 712, 792, 1527, 1964
MboI GATC 7 cut(s) 22, 277, 649, 710, 790, 1525, 1962
MboII GAAGA 9 cut(s) 79, 275, 317, 1105, 1220, 1405, 1604, 1999, 2002
MflI RGATCY 1 cut(s) 1962
MhlI GDGCHC 1 cut(s) 41
Mly113I GGCGCC 1 cut(s) 1317
MlyI GAGTC 1 cut(s) 1405
MmeI TCCRAC 3 cut(s) 645, 918, 1114
Mph1103I ATGCAT 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 1212
MseI TTAA 7 cut(s) 146, 384, 902, 1050, 1154, 1259, 1281
MslI CAYNNNNRTG 1 cut(s) 1647
MspI CCGG 2 cut(s) 1784, 1895
MspR9I CCNGG 4 cut(s) 411, 647, 708, 1086
MvaI CCWGG 4 cut(s) 411, 647, 708, 1086
MvnI CGCG 1 cut(s) 1231
MwoI GCNNNNNNNGC 3 cut(s) 1415, 1427, 1953
NarI GGCGCC 1 cut(s) 1317
NcoI CCATGG 1 cut(s) 332
NdeII GATC 7 cut(s) 22, 277, 649, 710, 790, 1525, 1962
NlaIII CATG 7 cut(s) 211, 336, 502, 1102, 1619, 1925, 1936
NlaIV GGNNCC 4 cut(s) 982, 1318, 1782, 1964
NmuCI GTSAC 3 cut(s) 103, 194, 670
NsiI ATGCAT 1 cut(s) 100
PagI TCATGA 1 cut(s) 1615
PaqCI CACCTGC 1 cut(s) 881
PciSI GCTCTTC 1 cut(s) 1088
PdmI GAANNNNTTC 1 cut(s) 1212
PfeI GAWTC 6 cut(s) 15, 622, 797, 1069, 1572, 1622
PfoI TCCNGGA 3 cut(s) 409, 706, 1084
PkrI GCNGC 5 cut(s) 113, 989, 1267, 1408, 1420
PleI GAGTC 1 cut(s) 1404
PluTI GGCGCC 1 cut(s) 1320
PpsI GAGTC 1 cut(s) 1404
PpuMI RGGWCCY 1 cut(s) 981
PshBI ATTAAT 1 cut(s) 1154
PsiI TTATAA 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 981
Psp6I CCWGG 4 cut(s) 409, 645, 706, 1084
PspEI GGTNACC 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 550
PspGI CCWGG 4 cut(s) 409, 645, 706, 1084
PspN4I GGNNCC 4 cut(s) 982, 1318, 1782, 1964
PspPI GGNCC 5 cut(s) 491, 548, 746, 981, 1013
PspPPI RGGWCCY 1 cut(s) 981
PstI CTGCAG 1 cut(s) 1432
PstNI CAGNNNCTG 1 cut(s) 1130
PsuI RGATCY 1 cut(s) 1962
RsaI GTAC 2 cut(s) 574, 1641
RsaNI GTAC 2 cut(s) 573, 1640
RseI CAYNNNNRTG 1 cut(s) 1647
SacI GAGCTC 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 1088
SaqAI TTAA 7 cut(s) 146, 384, 902, 1050, 1154, 1259, 1281
SatI GCNGC 5 cut(s) 112, 988, 1266, 1407, 1419
Sau3AI GATC 7 cut(s) 22, 277, 649, 710, 790, 1525, 1962
Sau96I GGNCC 5 cut(s) 491, 548, 746, 981, 1013
SchI GAGTC 1 cut(s) 1405
ScrFI CCNGG 4 cut(s) 411, 647, 708, 1086
SduI GDGCHC 1 cut(s) 41
SfaNI GCATC 6 cut(s) 123, 862, 1388, 1454, 1666, 1881
SfcI CTRYAG 1 cut(s) 1428
SfoI GGCGCC 1 cut(s) 1318
SinI GGWCC 4 cut(s) 491, 746, 981, 1013
SmiMI CAYNNNNRTG 1 cut(s) 1647
SsiI CCGC 5 cut(s) 112, 342, 486, 1229, 1798
SspDI GGCGCC 1 cut(s) 1316
SspI AATATT 2 cut(s) 1158, 1666
SspMI CTAG 4 cut(s) 264, 857, 1298, 1448
SstI GAGCTC 1 cut(s) 41
StyD4I CCNGG 4 cut(s) 409, 645, 706, 1084
StyI CCWWGG 4 cut(s) 332, 882, 1387, 1631
TaaI ACNGT 5 cut(s) 757, 1013, 1030, 1060, 1458
TaiI ACGT 1 cut(s) 936
TaqI TCGA 2 cut(s) 1473, 1625
TaqII GACCGA 3 cut(s) 1884, 1986, 1990
TatI WGTACW 2 cut(s) 572, 1639
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 6 cut(s) 15, 622, 797, 1069, 1572, 1622
Tru1I TTAA 7 cut(s) 146, 384, 902, 1050, 1154, 1259, 1281
Tru9I TTAA 7 cut(s) 146, 384, 902, 1050, 1154, 1259, 1281
TscAI CASTG 4 cut(s) 25, 112, 720, 1437
TseFI GTSAC 3 cut(s) 103, 194, 670
TseI GCWGC 4 cut(s) 987, 1265, 1406, 1418
Tsp45I GTSAC 3 cut(s) 103, 194, 670
TspDTI ATGAA 8 cut(s) 17, 43, 947, 1221, 1515, 1604, 1949, 2000
TspRI CASTG 4 cut(s) 25, 112, 720, 1437
VpaK11BI GGWCC 4 cut(s) 491, 746, 981, 1013
VspI ATTAAT 1 cut(s) 1154
XagI CCTNNNNNAGG 3 cut(s) 650, 999, 1526
XapI RAATTY 5 cut(s) 4, 61, 433, 954, 1488
XbaI TCTAGA 1 cut(s) 856
XmnI GAANNNNTTC 1 cut(s) 1212
XspI CTAG 4 cut(s) 264, 857, 1298, 1448
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.