pycom05g23820

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
25558707 .. 25559626
920 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23820.1

Sequence Viewer

Length: 666 bp
ATGAGATTGGTCTGCTTCTTACATGCAATGCATGATTCAGCCAGTCGGAATACAAGTGTTGGTCGTTTAAGTTCACGCCGTCGAGGAGAGCAAGTTCTGCACATGTACAATATGAAGATAAAGTTGATGATGAGGATACTATTACTCTGCTTCCTCAGCTGCTTCTGGTTTCAGCTGTCCTTTGCTCAAAATGCTACCACTGATCCATCTGAAGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCACCACCACACCCCCCCAACACACACCCACCCACCCACTTCTTTCGAGAAACCTATTTGTAAAGCCCTTTTTCTTCCCATATACAAAACATCCAAAAATTAAGGATAGTCTGGTAAGTGGTAACACAAGTCAAATTATGAGTGCAGTGAGGGCGTTGAACTCAATATTTGAACAATGGGACACACAAGCAGTGCCGGGGCAGTGGAATATCAGTGGAGAACCCTGCAGTGGATATGCCATCAACAGCACCGGCATTTTTAGCCTCTCTAGCCCAGCCATCATTTGCAACTGTTCTTACGACAATAATGCTACATGCCACATCACCGCACTGTATGTTAAACTACTCTCTCTTGATGAACAAGATTTCCATGCCACTGCTGATTTTTCACTTGCTACCTATATGTATTAA

Protein Analysis

222

Amino Acids

24.71

Weight (kDa)

8.49

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 582
AclWI GGATC 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 212, 485
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 2 cut(s) 415, 428
AloI GAACNNNNNNTCC 4 cut(s) 78, 110, 606, 638
AluBI AGCT 2 cut(s) 159, 175
AluI AGCT 2 cut(s) 159, 175
AlwI GGATC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 1 cut(s) 571
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 146
BccI CCATC 3 cut(s) 214, 503, 542
BceAI ACGGC 1 cut(s) 63
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciVI GTATCC 1 cut(s) 129
BcnI CCSGG 1 cut(s) 453
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 1 cut(s) 481
BfuI GTATCC 1 cut(s) 129
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 453
BmrFI CCNGG 1 cut(s) 453
Bpu10I CCTNAGC 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 452
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 485
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 2 cut(s) 212, 485
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 2 cut(s) 99, 244
BseXI GCAGC 1 cut(s) 146
BseYI CCCAGC 1 cut(s) 529
BsgI GTGCAG 2 cut(s) 83, 420
BsiSI CCGG 2 cut(s) 452, 507
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 2 cut(s) 212, 485
BsmFI GGGAC 1 cut(s) 449
Bsp1407I TGTACA 1 cut(s) 105
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 582
BspCNI CTCAG 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 485
BspPI GGATC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 506
BsrGI TGTACA 1 cut(s) 105
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 548, 588
BstAPI GCANNNNNTGC 1 cut(s) 97
BstAUI TGTACA 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 6 cut(s) 97, 156, 191, 407, 516, 525
BstNSI RCATGY 3 cut(s) 26, 106, 573
BstSCI CCNGG 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 481
BstV1I GCAGC 1 cut(s) 146
BsuI GTATCC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 5 cut(s) 408, 453, 464, 490, 630
BtsIMutI CAGTG 8 cut(s) 198, 408, 453, 464, 475, 490, 584, 630
Cfr10I RCCGGY 1 cut(s) 506
Csp6I GTAC 1 cut(s) 106
CviAII CATG 5 cut(s) 23, 32, 103, 570, 626
CviJI RGCY 7 cut(s) 41, 159, 175, 322, 519, 528, 533
CviKI_1 RGCY 7 cut(s) 41, 159, 175, 322, 519, 528, 533
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 155
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 33
FaeI CATG 5 cut(s) 26, 35, 106, 573, 629
FaqI GGGAC 1 cut(s) 449
FatI CATG 5 cut(s) 22, 31, 102, 569, 625
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 525
GluI GCNGC 1 cut(s) 160
GsaI CCCAGC 1 cut(s) 533
HapII CCGG 2 cut(s) 452, 507
Hin1II CATG 5 cut(s) 26, 35, 106, 573, 629
HinfI GANTC 1 cut(s) 35
HpaII CCGG 2 cut(s) 452, 507
HphI GGTGA 1 cut(s) 571
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 48, 211
Hpy188III TCNNGA 2 cut(s) 303, 608
Hpy8I GTNNAC 1 cut(s) 74
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 2 cut(s) 548, 588
HpyCH4V TGCA 6 cut(s) 26, 31, 100, 401, 483, 543
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 156, 191, 407, 516, 525
HpyF3I CTNAG 1 cut(s) 155
Hsp92II CATG 5 cut(s) 26, 35, 106, 573, 629
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 7 cut(s) 55, 151, 353, 465, 493, 520, 543
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 1 cut(s) 525
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 2 cut(s) 127, 322
MluCI AATT 2 cut(s) 354, 390
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 6 cut(s) 77, 126, 164, 265, 399, 530
Mph1103I ATGCAT 1 cut(s) 33
MseI TTAA 4 cut(s) 68, 357, 594, 664
MspA1I CMGCKG 2 cut(s) 159, 175
MspI CCGG 2 cut(s) 452, 507
MspR9I CCNGG 1 cut(s) 453
MwoI GCNNNNNNNGC 6 cut(s) 97, 156, 191, 407, 516, 525
NciI CCSGG 1 cut(s) 453
NdeII GATC 1 cut(s) 202
NlaIII CATG 5 cut(s) 26, 35, 106, 573, 629
NsiI ATGCAT 1 cut(s) 33
NspI RCATGY 3 cut(s) 26, 106, 573
PciI ACATGT 1 cut(s) 102
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 161
PscI ACATGT 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 529
PstI CTGCAG 1 cut(s) 485
PvuII CAGCTG 2 cut(s) 159, 175
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 4 cut(s) 68, 357, 594, 664
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 453
SetI ASST 5 cut(s) 161, 177, 217, 312, 656
SfcI CTRYAG 1 cut(s) 481
Sse9I AATT 2 cut(s) 354, 390
SsiI CCGC 1 cut(s) 582
SspI AATATT 1 cut(s) 423
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 451
TaaI ACNGT 2 cut(s) 548, 588
TaqI TCGA 2 cut(s) 82, 302
TasI AATT 2 cut(s) 354, 390
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 4 cut(s) 68, 357, 594, 664
Tru9I TTAA 4 cut(s) 68, 357, 594, 664
TscAI CASTG 8 cut(s) 205, 408, 453, 464, 475, 490, 591, 637
TseI GCWGC 1 cut(s) 159
TspDTI ATGAA 2 cut(s) 128, 627
TspRI CASTG 8 cut(s) 205, 408, 453, 464, 475, 490, 591, 637
XceI RCATGY 3 cut(s) 26, 106, 573
XspI CTAG 1 cut(s) 525
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.