Rorug05G0485000
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000088
Physical Location & Seq
Forward (+)
66841004 .. 66845289
4286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0485000.1

Sequence Viewer

Length: 1476 bp
ATGGGAGCTCGCTGCTCCAAACTATCTCTCTGCTTCTGGCCCTCTAACATCAAATCCAATCTCAATGATTCTTCAGACAAAGAGAATGGGAAGAAGAACGAGAAGGACTCGCTTCCTGGGTTCGTTGAGTTCAGCTTGGACCAGTTAAAAGCCGCCACGTCGGGGTTCTCGTCGGAGAACGTGGTCTCCGAGCACGGAGAGAAAGCTCCCAATGTGGTCTACAAGGGGACTCTTGAAGACGGCCGTTGGATCGCCGTTAAGCGGTTCAACCGATCGGCTTGGCCCGATTCGCGCCAATTTCTTGAGGAGGCTAGAGCTGTGGGGCAGCTGAGGAACGAGCGTCTGGCGAATTTGATTGGGTGTTGCTGTGAGGGTGATGACAGATTGCTTGTGGCTGAATTCATGCCTAATGAAACTCTCTCTAAGCATTTATTCCACTGGGAGACTCAGCCGATGAAATGGGCAATGAGGTTGCGAGTGGCTTTGTACCTTGCGCAAGCTTTGGAGTATTGCAGTAGTAGTGGGCAGGCATTGTACCATGATCTTAATGCTTATAGGGTTCTGTTTGATCAGGATGGAAATCCCAGACTCTCCTGCTTTGGTCTGATGAAGAATAGCAAAGATGGAAAGAGTTATAGTACCAACCTGGCCTTCACCCCTCCAGAATACTTGAGGACAGGAAGAGTGATCCCAGAAAGTTTGGTTTACAGCTTTGGGACCCTGTTGCTTGATCTGCTCAGTGGCAAACATATCCCCCCAAGCCATGCACTTGACCTGATACGCGGCAAAAACTTTTTAATGCTGATGGACTCATGCTTGGAAGGTCATTTCTCAAATGATGATGGAACTGAGCTGGTACGGTTAGCATCACGGTGTTTGCAGTATGAACCTCGTGAGAGGCCAAATGCCAAGTCTCTTGTGACTGCCCTTATTCCTCTTCAAAAGGAAACAGAGCAGGTTCCATCATATGTTTTGCTTGGTATTCCGCATGGAGATGTGCCTGCAAATCAGACATCGTTGTCACCTCTTGGTGACGCTTGCTCAAGATTAGATCTTACTGCCATACATGAAATCTTGGAGAAGGTTGCTTACAAGGATGACGAGGGGGTTGCAAATGATCTTTCTTTCCAAATGTGGACAAATCAAATACAAGAGACATTGAATTCCAAGAAACATGGGGATGCTGCATTTCGAGCGAAAGATTTTGCTACTGCCATAGATTCTTACACAGAATTCATTGATGGCGGGACCATGATATCTCCAACTGTGTTTGCTAGACGTTGTTTGTGCTATTTGATGAATGATATGGCACAAGAAGCTCTTGGAGATGCTATGCAAGCCCTAGTAATAAACCCTGAATGGCCGACTGCCTTCTACCTTCAAGCGGCTGCCTTAAAGAGCCTAGGGATGGACAACGATGCGCAGGAAACTCTAAAAGATGGCACATCCTTGGAAGAAAAAAAAGATAAAAACTGA

Protein Analysis

491

Amino Acids

54.81

Weight (kDa)

5.37

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 72 - 310 6.8e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 72 - 307 1.1e-21 Protein kinase domain
TPR_BSK1_C PF25575 345 - 462 1.3e-63 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1018
Acc16I TGCGCA 2 cut(s) 495, 1422
Acc36I ACCTGC 1 cut(s) 946
AccI GTMKAC 1 cut(s) 219
AccII CGCG 2 cut(s) 292, 783
AciI CCGC 6 cut(s) 153, 262, 783, 986, 1245, 1385
AclWI GGATC 2 cut(s) 257, 682
AcoI YGGCCR 2 cut(s) 241, 1361
AcsI RAATTY 4 cut(s) 349, 398, 1162, 1232
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 4 cut(s) 488, 536, 640, 858
AfiI CCNNNNNNNGG 4 cut(s) 162, 261, 1384, 1408
AgsI TTSAA 5 cut(s) 236, 268, 941, 1162, 1382
AjiI CACGTC 1 cut(s) 159
AjnI CCWGG 2 cut(s) 115, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 9 cut(s) 8, 135, 206, 317, 328, 500, 711, 853, 1319
AluI AGCT 9 cut(s) 8, 135, 206, 317, 328, 500, 711, 853, 1319
Alw21I GWGCWC 2 cut(s) 10, 195
Alw26I GTCTC 4 cut(s) 190, 437, 918, 1148
AlwI GGATC 2 cut(s) 257, 682
AoxI GGCC 6 cut(s) 38, 241, 281, 648, 899, 1361
ApeKI GCWGC 4 cut(s) 12, 325, 1184, 1388
ApoI RAATTY 4 cut(s) 349, 398, 1162, 1232
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
AspA2I CCTAGG 1 cut(s) 1402
AspLEI GCGC 3 cut(s) 294, 496, 1423
AspS9I GGNCC 5 cut(s) 39, 139, 282, 717, 1248
AsuHPI GGTGA 4 cut(s) 386, 646, 1014, 1043
AvaII GGWCC 3 cut(s) 139, 717, 1248
AvrII CCTAGG 1 cut(s) 1402
BanII GRGCYC 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 1073, 1105
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 2 cut(s) 10, 195
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 3 cut(s) 337, 1171, 1375
BccI CCATC 8 cut(s) 569, 617, 799, 836, 970, 1235, 1402, 1433
BceAI ACGGC 3 cut(s) 228, 239, 256
BcgI CGANNNNNNTGC 2 cut(s) 1091, 1125
BciT130I CCWGG 2 cut(s) 117, 647
BclI TGATCA 1 cut(s) 568
BcoDI GTCTC 4 cut(s) 190, 437, 918, 1148
BfaI CTAG 4 cut(s) 312, 1275, 1343, 1403
BfuAI ACCTGC 1 cut(s) 946
BglII AGATCT 1 cut(s) 1051
BisI GCNGC 7 cut(s) 13, 153, 326, 784, 1185, 1386, 1389
BlnI CCTAGG 1 cut(s) 1402
BlsI GCNGC 7 cut(s) 14, 154, 327, 785, 1186, 1387, 1390
Bme1390I CCNGG 2 cut(s) 117, 647
Bme18I GGWCC 3 cut(s) 139, 717, 1248
BmgBI CACGTC 1 cut(s) 159
BmgT120I GGNCC 5 cut(s) 39, 139, 282, 717, 1248
BmiI GGNNCC 4 cut(s) 718, 719, 960, 1249
BmrFI CCNGG 2 cut(s) 117, 647
BmrI ACTGGG 1 cut(s) 448
BmsI GCATC 4 cut(s) 875, 1171, 1318, 1408
BmuI ACTGGG 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 3 cut(s) 323, 691, 1027
BsaBI GATNNNNATC 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 3 cut(s) 116, 1402, 1449
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 261, 1384, 1408
Bse1I ACTGG 2 cut(s) 142, 443
Bse3DI GCAATG 1 cut(s) 471
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 2 cut(s) 117, 647
BseDI CCNNGG 3 cut(s) 116, 1402, 1449
BseGI GGATG 5 cut(s) 580, 1102, 1186, 1413, 1445
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 4 cut(s) 162, 261, 1384, 1408
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 4 cut(s) 320, 461, 751, 840
BseNI ACTGG 2 cut(s) 142, 443
BseRI GAGGAG 1 cut(s) 320
BseX3I CGGCCG 1 cut(s) 241
BseXI GCAGC 3 cut(s) 337, 1171, 1375
Bsh1236I CGCG 2 cut(s) 292, 783
Bsh1285I CGRYCG 2 cut(s) 244, 275
BshFI GGCC 6 cut(s) 40, 243, 283, 650, 901, 1363
BsiEI CGRYCG 2 cut(s) 244, 275
BsiHKAI GWGCWC 2 cut(s) 10, 195
BslFI GGGAC 3 cut(s) 241, 730, 1261
BslI CCNNNNNNNGG 4 cut(s) 162, 261, 1384, 1408
BsmAI GTCTC 4 cut(s) 190, 437, 918, 1148
BsmFI GGGAC 3 cut(s) 241, 730, 1261
BsnI GGCC 6 cut(s) 40, 243, 283, 650, 901, 1363
Bso31I GGTCTC 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 10, 195
Bsp143I GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1051, 1117
BspACI CCGC 6 cut(s) 153, 262, 783, 986, 1245, 1385
BspANI GGCC 6 cut(s) 40, 243, 283, 650, 901, 1363
BspCNI CTCAG 4 cut(s) 321, 460, 750, 841
BspFNI CGCG 2 cut(s) 292, 783
BspLI GGNNCC 4 cut(s) 718, 719, 960, 1249
BspMI ACCTGC 1 cut(s) 946
BspPI GGATC 2 cut(s) 257, 682
BspTNI GGTCTC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 471
BsrI ACTGG 2 cut(s) 142, 443
BssECI CCNNGG 3 cut(s) 116, 1402, 1449
BssMI GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1051, 1117
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 2 cut(s) 1402, 1449
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 2 cut(s) 117, 647
Bst4CI ACNGT 3 cut(s) 861, 873, 1267
Bst6I CTCTTC 2 cut(s) 676, 942
BstC8I GCNNGC 6 cut(s) 10, 498, 528, 1002, 1039, 1338
BstDEI CTNAG 5 cut(s) 329, 423, 447, 737, 849
BstF5I GGATG 5 cut(s) 580, 1102, 1186, 1413, 1445
BstFNI CGCG 2 cut(s) 292, 783
BstHHI GCGC 3 cut(s) 294, 496, 1423
BstKTI GATC 8 cut(s) 252, 275, 544, 571, 690, 733, 1054, 1120
BstMAI GTCTC 4 cut(s) 190, 437, 918, 1148
BstMBI GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1051, 1117
BstMCI CGRYCG 2 cut(s) 244, 275
BstMWI GCNNNNNNNGC 5 cut(s) 289, 733, 1193, 1316, 1337
BstNI CCWGG 2 cut(s) 117, 647
BstSCI CCNGG 2 cut(s) 115, 645
BstUI CGCG 2 cut(s) 292, 783
BstV1I GCAGC 3 cut(s) 337, 1171, 1375
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 1051
BstYI RGATCY 1 cut(s) 1051
BstZI CGGCCG 1 cut(s) 241
BsuRI GGCC 6 cut(s) 40, 243, 283, 650, 901, 1363
BtrI CACGTC 1 cut(s) 159
BtsCI GGATG 5 cut(s) 580, 1102, 1186, 1413, 1445
BtsIMutI CAGTG 2 cut(s) 436, 745
BveI ACCTGC 1 cut(s) 946
Cac8I GCNNGC 6 cut(s) 10, 498, 528, 1002, 1039, 1338
CfoI GCGC 3 cut(s) 294, 496, 1423
Cfr13I GGNCC 5 cut(s) 39, 139, 282, 717, 1248
CseI GACGC 2 cut(s) 329, 1043
Csp6I GTAC 4 cut(s) 487, 535, 639, 857
CviAII CATG 8 cut(s) 403, 539, 764, 813, 989, 1067, 1175, 1252
CviQI GTAC 4 cut(s) 487, 535, 639, 857
DdeI CTNAG 5 cut(s) 329, 423, 447, 737, 849
DpnI GATC 8 cut(s) 251, 274, 543, 570, 689, 732, 1053, 1119
DpnII GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1051, 1117
DrdI GACNNNNNNGTC 1 cut(s) 1018
DseDI GACNNNNNNGTC 1 cut(s) 1018
EaeI YGGCCR 2 cut(s) 241, 1361
EagI CGGCCG 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 676, 942
EarI CTCTTC 2 cut(s) 676, 942
Ecl136II GAGCTC 1 cut(s) 8
EclXI CGGCCG 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 1402, 1449
Eco24I GRGCYC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 190
Eco32I GATATC 1 cut(s) 1257
Eco47I GGWCC 3 cut(s) 139, 717, 1248
Eco52I CGGCCG 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 717
EcoRI GAATTC 3 cut(s) 398, 1162, 1232
EcoRII CCWGG 2 cut(s) 115, 645
EcoRV GATATC 1 cut(s) 1257
EcoT14I CCWWGG 2 cut(s) 1402, 1449
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 2 cut(s) 1402, 1449
FaeI CATG 8 cut(s) 406, 542, 767, 816, 992, 1070, 1178, 1255
FalI AAGNNNNNCTT 2 cut(s) 1305, 1337
FaqI GGGAC 3 cut(s) 241, 730, 1261
FatI CATG 8 cut(s) 402, 538, 763, 812, 988, 1066, 1174, 1251
FauI CCCGC 1 cut(s) 1238
FauNDI CATATG 1 cut(s) 967
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 7 cut(s) 13, 153, 326, 784, 1185, 1386, 1389
FokI GGATG 5 cut(s) 587, 1109, 1193, 1420, 1432
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 7 cut(s) 13, 153, 326, 784, 1185, 1386, 1389
FspBI CTAG 4 cut(s) 312, 1275, 1343, 1403
FspI TGCGCA 2 cut(s) 495, 1422
GlaI GCGC 3 cut(s) 293, 495, 1422
GluI GCNGC 7 cut(s) 13, 153, 326, 784, 1185, 1386, 1389
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 6 cut(s) 40, 243, 283, 650, 901, 1363
HgaI GACGC 2 cut(s) 329, 1043
HhaI GCGC 3 cut(s) 294, 496, 1423
Hin1II CATG 8 cut(s) 406, 542, 767, 816, 992, 1070, 1178, 1255
Hin6I GCGC 3 cut(s) 292, 494, 1421
HinP1I GCGC 3 cut(s) 292, 494, 1421
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 8 cut(s) 68, 107, 229, 287, 445, 588, 809, 1220
HphI GGTGA 4 cut(s) 386, 646, 1014, 1043
Hpy166II GTNNAC 3 cut(s) 220, 706, 1137
Hpy188I TCNGA 5 cut(s) 76, 175, 190, 606, 1011
Hpy188III TCNNGA 6 cut(s) 233, 302, 572, 662, 893, 1044
Hpy8I GTNNAC 3 cut(s) 220, 706, 1137
Hpy99I CGWCG 2 cut(s) 163, 175
HpyAV CCTTC 6 cut(s) 97, 661, 815, 1075, 1381, 1388
HpyCH4III ACNGT 3 cut(s) 861, 873, 1267
HpyCH4IV ACGT 3 cut(s) 158, 180, 1279
HpyCH4V TGCA 7 cut(s) 513, 767, 880, 1004, 1112, 1187, 1336
HpyF10VI GCNNNNNNNGC 5 cut(s) 289, 733, 1193, 1316, 1337
HpyF3I CTNAG 5 cut(s) 329, 423, 447, 737, 849
HpySE526I ACGT 3 cut(s) 158, 180, 1279
Hsp92II CATG 8 cut(s) 406, 542, 767, 816, 992, 1070, 1178, 1255
HspAI GCGC 3 cut(s) 292, 494, 1421
KflI GGGWCCC 1 cut(s) 717
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1051, 1117
LmnI GCTCC 3 cut(s) 5, 20, 211
Lsp1109I GCAGC 3 cut(s) 337, 1171, 1375
LweI GCATC 4 cut(s) 875, 1171, 1318, 1408
MaeI CTAG 4 cut(s) 312, 1275, 1343, 1403
MaeII ACGT 3 cut(s) 158, 180, 1279
MaeIII GTNAC 3 cut(s) 919, 1020, 1031
MalI GATC 8 cut(s) 251, 274, 543, 570, 689, 732, 1053, 1119
MboI GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1051, 1117
MboII GAAGA 8 cut(s) 63, 103, 106, 248, 622, 693, 929, 1466
MflI RGATCY 1 cut(s) 1051
MhlI GDGCHC 2 cut(s) 10, 195
MluCI AATT 5 cut(s) 296, 349, 398, 1162, 1232
MlyI GAGTC 5 cut(s) 101, 223, 439, 582, 803
MmeI TCCRAC 3 cut(s) 153, 227, 1286
MseI TTAA 5 cut(s) 146, 258, 546, 797, 1394
MslI CAYNNNNRTG 3 cut(s) 871, 993, 1179
MspA1I CMGCKG 1 cut(s) 328
MspR9I CCNGG 2 cut(s) 117, 647
MvaI CCWGG 2 cut(s) 117, 647
MvnI CGCG 2 cut(s) 292, 783
MwoI GCNNNNNNNGC 5 cut(s) 289, 733, 1193, 1316, 1337
NdeI CATATG 1 cut(s) 967
NdeII GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1051, 1117
NlaIII CATG 8 cut(s) 406, 542, 767, 816, 992, 1070, 1178, 1255
NlaIV GGNNCC 4 cut(s) 718, 719, 960, 1249
NmuCI GTSAC 3 cut(s) 919, 1020, 1031
NsbI TGCGCA 2 cut(s) 495, 1422
PcsI WCGNNNNNNNCGW 2 cut(s) 167, 186
PfeI GAWTC 3 cut(s) 68, 287, 1220
PkrI GCNGC 7 cut(s) 14, 154, 327, 785, 1186, 1387, 1390
Ple19I CGATCG 1 cut(s) 275
PleI GAGTC 5 cut(s) 101, 223, 439, 582, 803
PpsI GAGTC 5 cut(s) 101, 223, 439, 582, 803
PpuMI RGGWCCY 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 717
Psp6I CCWGG 2 cut(s) 115, 645
PspGI CCWGG 2 cut(s) 115, 645
PspN4I GGNNCC 4 cut(s) 718, 719, 960, 1249
PspPI GGNCC 5 cut(s) 39, 139, 282, 717, 1248
PspPPI RGGWCCY 1 cut(s) 717
PsuI RGATCY 1 cut(s) 1051
PvuI CGATCG 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 4 cut(s) 488, 536, 640, 858
RsaNI GTAC 4 cut(s) 487, 535, 639, 857
RseI CAYNNNNRTG 3 cut(s) 871, 993, 1179
SacI GAGCTC 1 cut(s) 10
SaqAI TTAA 5 cut(s) 146, 258, 546, 797, 1394
SatI GCNGC 7 cut(s) 13, 153, 326, 784, 1185, 1386, 1389
Sau3AI GATC 8 cut(s) 249, 272, 541, 568, 687, 730, 1051, 1117
Sau96I GGNCC 5 cut(s) 39, 139, 282, 717, 1248
SchI GAGTC 5 cut(s) 101, 223, 439, 582, 803
ScrFI CCNGG 2 cut(s) 117, 647
SduI GDGCHC 2 cut(s) 10, 195
SfaNI GCATC 4 cut(s) 875, 1171, 1318, 1408
SinI GGWCC 3 cut(s) 139, 717, 1248
SmiMI CAYNNNNRTG 3 cut(s) 871, 993, 1179
SmlI CTYRAG 3 cut(s) 302, 670, 1042
SmoI CTYRAG 3 cut(s) 302, 670, 1042
Sse9I AATT 5 cut(s) 296, 349, 398, 1162, 1232
SsiI CCGC 6 cut(s) 153, 262, 783, 986, 1245, 1385
SspMI CTAG 4 cut(s) 312, 1275, 1343, 1403
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 2 cut(s) 115, 645
StyI CCWWGG 2 cut(s) 1402, 1449
TaaI ACNGT 3 cut(s) 861, 873, 1267
TaiI ACGT 3 cut(s) 161, 183, 1282
TaqI TCGA 1 cut(s) 1192
TasI AATT 5 cut(s) 296, 349, 398, 1162, 1232
TauI GCSGC 3 cut(s) 155, 786, 1388
TfiI GAWTC 3 cut(s) 68, 287, 1220
Tru1I TTAA 5 cut(s) 146, 258, 546, 797, 1394
Tru9I TTAA 5 cut(s) 146, 258, 546, 797, 1394
TscAI CASTG 2 cut(s) 443, 745
TseFI GTSAC 3 cut(s) 919, 1020, 1031
TseI GCWGC 4 cut(s) 12, 325, 1184, 1388
Tsp45I GTSAC 3 cut(s) 919, 1020, 1031
TspDTI ATGAA 8 cut(s) 391, 426, 470, 623, 900, 1083, 1225, 1313
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 2 cut(s) 443, 745
VpaK11BI GGWCC 3 cut(s) 139, 717, 1248
XapI RAATTY 4 cut(s) 349, 398, 1162, 1232
XmaJI CCTAGG 1 cut(s) 1402
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 4 cut(s) 312, 1275, 1343, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.