Niemann-Pick C1
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1080500.v1.1 MD16G1285200.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801 |
| rosa_laevigata | RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984 |
| rosa_multiflora | Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00312410 Rroxscaffold_7G00187620 |
| rosa_rugosa | Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700 |
| rosa_samantha | Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500 |
| rosa_wichuraiana | Rw4G014860 Rw6G026540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 213 |
| AciI | CCGC | 1 cut(s) | 211 |
| AgsI | TTSAA | 1 cut(s) | 263 |
| AluBI | AGCT | 3 cut(s) | 152, 239, 281 |
| AluI | AGCT | 3 cut(s) | 152, 239, 281 |
| Alw26I | GTCTC | 1 cut(s) | 86 |
| ApeKI | GCWGC | 1 cut(s) | 230 |
| AspS9I | GGNCC | 1 cut(s) | 134 |
| AsuHPI | GGTGA | 1 cut(s) | 27 |
| AvaII | GGWCC | 1 cut(s) | 134 |
| BbvI | GCAGC | 1 cut(s) | 242 |
| BccI | CCATC | 1 cut(s) | 145 |
| BcoDI | GTCTC | 1 cut(s) | 86 |
| BfaI | CTAG | 3 cut(s) | 149, 153, 236 |
| BisI | GCNGC | 2 cut(s) | 211, 231 |
| BlsI | GCNGC | 2 cut(s) | 212, 232 |
| Bme18I | GGWCC | 1 cut(s) | 134 |
| BmgT120I | GGNCC | 1 cut(s) | 134 |
| BsaI | GGTCTC | 1 cut(s) | 86 |
| BseMII | CTCAG | 1 cut(s) | 300 |
| BseXI | GCAGC | 1 cut(s) | 242 |
| Bsh1236I | CGCG | 1 cut(s) | 213 |
| BsmAI | GTCTC | 1 cut(s) | 86 |
| BsmI | GAATGC | 1 cut(s) | 173 |
| Bso31I | GGTCTC | 1 cut(s) | 86 |
| BspACI | CCGC | 1 cut(s) | 211 |
| BspCNI | CTCAG | 1 cut(s) | 301 |
| BspFNI | CGCG | 1 cut(s) | 213 |
| BspTNI | GGTCTC | 1 cut(s) | 86 |
| BstC8I | GCNNGC | 1 cut(s) | 208 |
| BstDEI | CTNAG | 2 cut(s) | 66, 309 |
| BstFNI | CGCG | 1 cut(s) | 213 |
| BstMAI | GTCTC | 1 cut(s) | 86 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 103, 236, 278 |
| BstNSI | RCATGY | 1 cut(s) | 210 |
| BstUI | CGCG | 1 cut(s) | 213 |
| BstV1I | GCAGC | 1 cut(s) | 242 |
| Cac8I | GCNNGC | 1 cut(s) | 208 |
| Cfr13I | GGNCC | 1 cut(s) | 134 |
| CviAII | CATG | 3 cut(s) | 103, 207, 223 |
| CviJI | RGCY | 3 cut(s) | 152, 239, 281 |
| CviKI_1 | RGCY | 3 cut(s) | 152, 239, 281 |
| DdeI | CTNAG | 2 cut(s) | 66, 309 |
| Eco31I | GGTCTC | 1 cut(s) | 86 |
| Eco47I | GGWCC | 1 cut(s) | 134 |
| FaeI | CATG | 3 cut(s) | 106, 210, 226 |
| FaiI | YATR | 5 cut(s) | 12, 104, 200, 208, 224 |
| FatI | CATG | 3 cut(s) | 102, 206, 222 |
| Fnu4HI | GCNGC | 2 cut(s) | 211, 231 |
| Fsp4HI | GCNGC | 2 cut(s) | 211, 231 |
| FspBI | CTAG | 3 cut(s) | 149, 153, 236 |
| GluI | GCNGC | 2 cut(s) | 211, 231 |
| Hin1II | CATG | 3 cut(s) | 106, 210, 226 |
| HinfI | GANTC | 1 cut(s) | 32 |
| HphI | GGTGA | 1 cut(s) | 27 |
| Hpy188I | TCNGA | 1 cut(s) | 163 |
| HpyAV | CCTTC | 1 cut(s) | 269 |
| HpyCH4V | TGCA | 2 cut(s) | 230, 272 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 103, 236, 278 |
| HpyF3I | CTNAG | 2 cut(s) | 66, 309 |
| Hsp92II | CATG | 3 cut(s) | 106, 210, 226 |
| LpnPI | CCDG | 2 cut(s) | 72, 233 |
| Lsp1109I | GCAGC | 1 cut(s) | 242 |
| MaeI | CTAG | 3 cut(s) | 149, 153, 236 |
| MaeIII | GTNAC | 1 cut(s) | 265 |
| MlyI | GAGTC | 1 cut(s) | 26 |
| MmeI | TCCRAC | 1 cut(s) | 112 |
| MnlI | CCTC | 4 cut(s) | 48, 157, 266, 304 |
| Mva1269I | GAATGC | 1 cut(s) | 173 |
| MvnI | CGCG | 1 cut(s) | 213 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 103, 236, 278 |
| NlaIII | CATG | 3 cut(s) | 106, 210, 226 |
| NspI | RCATGY | 1 cut(s) | 210 |
| PaeI | GCATGC | 1 cut(s) | 210 |
| PctI | GAATGC | 1 cut(s) | 173 |
| PkrI | GCNGC | 2 cut(s) | 212, 232 |
| PleI | GAGTC | 1 cut(s) | 26 |
| PpsI | GAGTC | 1 cut(s) | 26 |
| PspPI | GGNCC | 1 cut(s) | 134 |
| SatI | GCNGC | 2 cut(s) | 211, 231 |
| Sau96I | GGNCC | 1 cut(s) | 134 |
| SchI | GAGTC | 1 cut(s) | 26 |
| SetI | ASST | 6 cut(s) | 40, 72, 154, 168, 241, 283 |
| SinI | GGWCC | 1 cut(s) | 134 |
| SphI | GCATGC | 1 cut(s) | 210 |
| SsiI | CCGC | 1 cut(s) | 211 |
| SspMI | CTAG | 3 cut(s) | 149, 153, 236 |
| TauI | GCSGC | 1 cut(s) | 213 |
| TseI | GCWGC | 1 cut(s) | 230 |
| VpaK11BI | GGWCC | 1 cut(s) | 134 |
| XceI | RCATGY | 1 cut(s) | 210 |
| XspI | CTAG | 3 cut(s) | 149, 153, 236 |