Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002279

Physical Location & Seq

Genomic Coordinates Reverse (-)

44216833 .. 44226660

Gene Structure 9828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25182

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGCCAGCATGCCGAGTCTTCTCCATGATTGCAGCCCTTGCTGTTTTGATGGACTTCTTTCTGCAAGTCACTGCATTTGTTGCGTTGATATACTTTGACCTTTTGAGAGCTGAGGATGGCAGGTTTGATTGTTTTCCATGCATAAAAGTCTCGTCATCTTTTGTGGAATCCACTGAAGGTATATTTGTGTGCTATGATAGTGTGTTGAGGTTGCTTTGCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

74

Amino Acids

8.33

Weight (kDa)

4.46

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sterol-sensing	PF12349	1 - 49	2e-10	Sterol-sensing domain of SREBP cleavage-activation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002279)

Species	Orthologous Gene IDs
malus_domestica	MD00G1080500.v1.1 MD16G1285200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801
rosa_laevigata	RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984
rosa_multiflora	Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312410 Rroxscaffold_7G00187620
rosa_rugosa	Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700
rosa_samantha	Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500
rosa_wichuraiana	Rw4G014860 Rw6G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	2 cut(s)	43, 110
BcoDI	GTCTC	1 cut(s)	154
BfuAI	ACCTGC	1 cut(s)	111
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	10
Bpu10I	CCTNAGC	1 cut(s)	111
BseGI	GGATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	111
BstAPI	GCANNNNNTGC	2 cut(s)	38, 80
BstC8I	GCNNGC	2 cut(s)	6, 10
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 80
BstNSI	RCATGY	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 171
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	6, 10
CviAII	CATG	3 cut(s)	9, 25, 138
CviJI	RGCY	2 cut(s)	35, 110
CviKI_1	RGCY	2 cut(s)	35, 110
DdeI	CTNAG	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	143
FaeI	CATG	3 cut(s)	12, 28, 141
FaiI	YATR	7 cut(s)	10, 26, 91, 139, 143, 182, 195
FatI	CATG	3 cut(s)	8, 24, 137
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	12, 28, 141
HinfI	GANTC	2 cut(s)	15, 167
HpyAV	CCTTC	1 cut(s)	170
HpyCH4V	TGCA	4 cut(s)	32, 64, 74, 141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 80
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	12, 28, 141
LpnPI	CCDG	2 cut(s)	18, 106
Lsp1109I	GCAGC	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	10
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	2 cut(s)	106, 201
Mph1103I	ATGCAT	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	38, 80
NlaIII	CATG	3 cut(s)	12, 28, 141
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	143
NspI	RCATGY	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
SatI	GCNGC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	24
SetI	ASST	5 cut(s)	102, 112, 125, 181, 212
SgeI	CNNG	9 cut(s)	17, 21, 26, 37, 50, 77, 133, 150, 163
SphI	GCATGC	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	167
TscAI	CASTG	2 cut(s)	76, 178
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	67
TspRI	CASTG	2 cut(s)	76, 178
XceI	RCATGY	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.