Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002279

Physical Location & Seq

Genomic Coordinates Forward (+)

27015866 .. 27020734

Gene Structure 4869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGCTTTCTGTTCTTGGATCTGTTGGATTTTTGAGTGCTGTGAGAGTTAAATCTACATTAATCATAATGGAAGTCATTCCTTACCTTGTTTTGGCTGTTGGTGTAGATAACATGTGTATATTGGTACATGCAATCACCGGAGTTACCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

50

Amino Acids

5.29

Weight (kDa)

6.5

Isoelectric Point (pI)

5.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patched	PF02460	1 - 46	1.1e-07	Patched SSD
Sterol-sensing	PF12349	2 - 46	1.5e-12	Sterol-sensing domain of SREBP cleavage-activation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002279)

Species	Orthologous Gene IDs
malus_domestica	MD00G1080500.v1.1 MD16G1285200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801
rosa_laevigata	RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984
rosa_multiflora	Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312410 Rroxscaffold_7G00187620
rosa_rugosa	Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700
rosa_samantha	Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500
rosa_wichuraiana	Rw4G014860 Rw6G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	25
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	91
AflIII	ACRYGT	1 cut(s)	111
AlwI	GGATC	1 cut(s)	25
AseI	ATTAAT	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	25
BssMI	GATC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstNSI	RCATGY	2 cut(s)	115, 131
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	2 cut(s)	112, 128
CviJI	RGCY	1 cut(s)	95
CviKI_1	RGCY	1 cut(s)	95
CviQI	GTAC	1 cut(s)	125
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
FaeI	CATG	2 cut(s)	115, 131
FaiI	YATR	4 cut(s)	65, 113, 119, 129
FatI	CATG	2 cut(s)	111, 127
FspEI	CC	8 cut(s)	9, 53, 77, 84, 93, 98, 107, 123
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	2 cut(s)	115, 131
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	115, 131
Kzo9I	GATC	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MflI	RGATCY	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	2 cut(s)	48, 59
MspI	CCGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	115, 131
NspI	RCATGY	2 cut(s)	115, 131
PciI	ACATGT	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	75
PscI	ACATGT	1 cut(s)	111
PshBI	ATTAAT	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	48, 59
Sau3AI	GATC	1 cut(s)	17
SetI	ASST	2 cut(s)	87, 149
SgeI	CNNG	4 cut(s)	26, 98, 124, 140
Tru1I	TTAA	2 cut(s)	48, 59
Tru9I	TTAA	2 cut(s)	48, 59
VspI	ATTAAT	1 cut(s)	59
XceI	RCATGY	2 cut(s)	115, 131
XmnI	GAANNNNTTC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.