Niemann-Pick C1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1080500.v1.1 MD16G1285200.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801 |
| rosa_laevigata | RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984 |
| rosa_multiflora | Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00312410 Rroxscaffold_7G00187620 |
| rosa_rugosa | Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700 |
| rosa_samantha | Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500 |
| rosa_wichuraiana | Rw4G014860 Rw6G026540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 55 |
| AclWI | GGATC | 1 cut(s) | 155 |
| AcuI | CTGAAG | 1 cut(s) | 66 |
| AdeI | CACNNNGTG | 1 cut(s) | 67 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 50 |
| AflIII | ACRYGT | 1 cut(s) | 130 |
| AgsI | TTSAA | 1 cut(s) | 149 |
| AjnI | CCWGG | 3 cut(s) | 21, 109, 174 |
| AluBI | AGCT | 1 cut(s) | 152 |
| AluI | AGCT | 1 cut(s) | 152 |
| AlwI | GGATC | 1 cut(s) | 155 |
| AseI | ATTAAT | 1 cut(s) | 237 |
| AsuHPI | GGTGA | 2 cut(s) | 125, 217 |
| BaeGI | GKGCMC | 1 cut(s) | 58 |
| BanI | GGYRCC | 1 cut(s) | 55 |
| BciT130I | CCWGG | 3 cut(s) | 23, 111, 176 |
| Bme1390I | CCNGG | 3 cut(s) | 23, 111, 176 |
| BmiI | GGNNCC | 3 cut(s) | 20, 57, 210 |
| BmrFI | CCNGG | 3 cut(s) | 23, 111, 176 |
| BmsI | GCATC | 3 cut(s) | 18, 69, 88 |
| BpmI | CTGGAG | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 2 cut(s) | 174, 175 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 50 |
| Bse1I | ACTGG | 2 cut(s) | 96, 285 |
| BseBI | CCWGG | 3 cut(s) | 23, 111, 176 |
| BseDI | CCNNGG | 2 cut(s) | 174, 175 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 50 |
| BseNI | ACTGG | 2 cut(s) | 96, 285 |
| BseSI | GKGCMC | 1 cut(s) | 58 |
| BshNI | GGYRCC | 1 cut(s) | 55 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 50 |
| BsmI | GAATGC | 2 cut(s) | 215, 280 |
| Bsp1286I | GDGCHC | 1 cut(s) | 58 |
| Bsp143I | GATC | 1 cut(s) | 160 |
| BspLI | GGNNCC | 3 cut(s) | 20, 57, 210 |
| BspPI | GGATC | 1 cut(s) | 155 |
| BspT107I | GGYRCC | 1 cut(s) | 55 |
| BsrI | ACTGG | 2 cut(s) | 96, 285 |
| BssECI | CCNNGG | 2 cut(s) | 174, 175 |
| BssMI | GATC | 1 cut(s) | 160 |
| Bst2UI | CCWGG | 3 cut(s) | 23, 111, 176 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 48 |
| BstKTI | GATC | 1 cut(s) | 163 |
| BstMBI | GATC | 1 cut(s) | 160 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 62, 149 |
| BstNI | CCWGG | 3 cut(s) | 23, 111, 176 |
| BstNSI | RCATGY | 1 cut(s) | 134 |
| BstSCI | CCNGG | 3 cut(s) | 21, 109, 174 |
| BstSLI | GKGCMC | 1 cut(s) | 58 |
| BtsI | GCAGTG | 1 cut(s) | 168 |
| BtsIMutI | CAGTG | 2 cut(s) | 168, 278 |
| CsiI | ACCWGGT | 1 cut(s) | 109 |
| CviAII | CATG | 2 cut(s) | 83, 131 |
| CviJI | RGCY | 5 cut(s) | 19, 152, 209, 284, 296 |
| CviKI_1 | RGCY | 5 cut(s) | 19, 152, 209, 284, 296 |
| DpnI | GATC | 1 cut(s) | 162 |
| DpnII | GATC | 1 cut(s) | 160 |
| DraIII | CACNNNGTG | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 1 cut(s) | 66 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 48 |
| EcoRII | CCWGG | 3 cut(s) | 21, 109, 174 |
| EcoT22I | ATGCAT | 1 cut(s) | 84 |
| FaeI | CATG | 2 cut(s) | 86, 134 |
| FaiI | YATR | 4 cut(s) | 84, 132, 204, 221 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 141, 173 |
| FatI | CATG | 2 cut(s) | 82, 130 |
| GsuI | CTGGAG | 1 cut(s) | 5 |
| Hin1II | CATG | 2 cut(s) | 86, 134 |
| HinfI | GANTC | 1 cut(s) | 183 |
| HphI | GGTGA | 2 cut(s) | 125, 217 |
| Hpy188III | TCNNGA | 1 cut(s) | 189 |
| HpyAV | CCTTC | 2 cut(s) | 41, 286 |
| HpyCH4V | TGCA | 4 cut(s) | 82, 215, 245, 278 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 62, 149 |
| Hsp92II | CATG | 2 cut(s) | 86, 134 |
| Kzo9I | GATC | 1 cut(s) | 160 |
| LmnI | GCTCC | 3 cut(s) | 24, 157, 214 |
| LweI | GCATC | 3 cut(s) | 18, 69, 88 |
| MabI | ACCWGGT | 1 cut(s) | 109 |
| MaeIII | GTNAC | 2 cut(s) | 113, 223 |
| MalI | GATC | 1 cut(s) | 162 |
| MboI | GATC | 1 cut(s) | 160 |
| MhlI | GDGCHC | 1 cut(s) | 58 |
| MluCI | AATT | 1 cut(s) | 234 |
| MnlI | CCTC | 4 cut(s) | 9, 44, 173, 199 |
| Mph1103I | ATGCAT | 1 cut(s) | 84 |
| MseI | TTAA | 3 cut(s) | 137, 237, 319 |
| MspR9I | CCNGG | 3 cut(s) | 23, 111, 176 |
| Mva1269I | GAATGC | 2 cut(s) | 215, 280 |
| MvaI | CCWGG | 3 cut(s) | 23, 111, 176 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 62, 149 |
| NdeII | GATC | 1 cut(s) | 160 |
| NlaIII | CATG | 2 cut(s) | 86, 134 |
| NlaIV | GGNNCC | 3 cut(s) | 20, 57, 210 |
| NmuCI | GTSAC | 2 cut(s) | 113, 223 |
| NsiI | ATGCAT | 1 cut(s) | 84 |
| NspI | RCATGY | 1 cut(s) | 134 |
| PasI | CCCWGGG | 1 cut(s) | 175 |
| PciI | ACATGT | 1 cut(s) | 130 |
| PctI | GAATGC | 2 cut(s) | 215, 280 |
| PfeI | GAWTC | 1 cut(s) | 183 |
| PfoI | TCCNGGA | 1 cut(s) | 21 |
| PscI | ACATGT | 1 cut(s) | 130 |
| PshBI | ATTAAT | 1 cut(s) | 237 |
| Psp6I | CCWGG | 3 cut(s) | 21, 109, 174 |
| PspGI | CCWGG | 3 cut(s) | 21, 109, 174 |
| PspN4I | GGNNCC | 3 cut(s) | 20, 57, 210 |
| SaqAI | TTAA | 3 cut(s) | 137, 237, 319 |
| Sau3AI | GATC | 1 cut(s) | 160 |
| ScrFI | CCNGG | 3 cut(s) | 23, 111, 176 |
| SduI | GDGCHC | 1 cut(s) | 58 |
| SetI | ASST | 3 cut(s) | 115, 154, 230 |
| SexAI | ACCWGGT | 1 cut(s) | 109 |
| SfaNI | GCATC | 3 cut(s) | 18, 69, 88 |
| Sse9I | AATT | 1 cut(s) | 234 |
| StyD4I | CCNGG | 3 cut(s) | 21, 109, 174 |
| TasI | AATT | 1 cut(s) | 234 |
| TfiI | GAWTC | 1 cut(s) | 183 |
| Tru1I | TTAA | 3 cut(s) | 137, 237, 319 |
| Tru9I | TTAA | 3 cut(s) | 137, 237, 319 |
| TscAI | CASTG | 2 cut(s) | 175, 285 |
| TseFI | GTSAC | 2 cut(s) | 113, 223 |
| Tsp45I | GTSAC | 2 cut(s) | 113, 223 |
| TspDTI | ATGAA | 2 cut(s) | 51, 208 |
| TspRI | CASTG | 2 cut(s) | 175, 285 |
| VspI | ATTAAT | 1 cut(s) | 237 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 48 |
| XceI | RCATGY | 1 cut(s) | 134 |
| Zsp2I | ATGCAT | 1 cut(s) | 84 |