Rmu_sc0002494.1_g000006

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002494.1
Physical Location & Seq
Forward (+)
47343 .. 51310
3968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002494.1_g000006.1.cds

Sequence Viewer

Length: 2088 bp
atggctccatctgcaagcacatcgaaagttgctagatctatagccttaaggataaaggcggtgcagatgaaacgtagtagaaaaaccgtatctgaaccacctattacttctccaaatcgtaaacctgctacccccaagaaggctgaagcaagattgacagaagccaacaaggctaccctccctaggagaagtccgcgatcgaataaagcaaaggaagctgctcagtctagcaaggatgcggctgccaagagaaatatgcgaccgcctaaagcagcaaagtccaagaaggctgtggcatcaaagaagtcgtcaactggtagtaagtctgcaaagagcaagtcatccgaggattctgatgatgatgagaatgtcactggtggattgaggttgcttaagcgagggatggctgccaagagaaatatgcgaccgcctaaagcagcaaagtccaagaaggctgtggcatcaaaaaagtcatcaactggtagtaagtctgcaaagagcaagtcatccgaggattctgatgatgatgagaatgtcactggtggattggggttgcttaagcgagggatggtaaccatgaatcgaattactaggcgactgcttcaaggaaagaagctaaaggtgatttctaatgctgatggggagccaattgggaaggcagctaaggagatgcagtcctatattggggtgttggcacgcaccaagatcccaatatctataaatgattggagaaatgtgcctttggatgaaaaagacaagatttggaatagtattcaggatgcttatgtggtgccaaaagagtggaagaaactggttattgcatcagctgccaacaaatggagagagttcaagagcaaactaactaactggtacattattccctatctagatactcctgaactcttacagttccctccagatgattatcgatccattgaggtagatgaatggaatacgttcgtggctgatagaacttcaaaacaatttcaggcactccgcgaaatgcagagaacaaagaggaaggagaataagtatcctcatcgaatgtcacggaaaggatatgctaacttccaggaagaactggaaaatttgaagaggaaagtgtctgaaggagaaatcaaccctgaaggaacagatgatgttctgactttggcgttgggaaatcctgagtgtcccggtagggtacgcggtgttggtggcttcgtcaagccttctgcattttttcatctacctaaacgacaaaagctaaatgtagaagatagtgtcagggcaagtgttaagaagatactagcagaggagaaagaaaatatcattgctgaggaaagagccaaatgggagttggagatggagcaacaaattgctagggaaagagcagcttgggaagaaaggattcagaagttagaagcgaagtttgatgggaaagagatgccagctgactcaaccaaacctgtgacaccgctgaatgatttagggtctggccagggcagctgttctaggcattttgacaaggctggtttgaaagttattgaaagtgaagccgccaaaattgccaagaagttagatttaggggaggaccagcagaaagtagttgaggaggatgaaatttttgtggatggggagctgaacatcaaactaacctcaattattgaggaggaggctccacttgatccaagcactgccttgggaggattctctggaaacaactattatgagtcttctgcatttgtagtcacctacccaattaataatgcagttgatgacgtaggaaatgagaacgggaaggcactggcttgggagaaggcttttattcagttagcaaagatctggagcaaatatgtttataaaaaaactgttgccaatggtgctgtctcggaactgagtctctcattttcagttgaaagctcaattgaggaagagttaataagagagtactgcagatgttataaccataatagtaagttatatggtaatgttcctgtatatatctctgacattgggagatgcacctcaaatctcttctttttacctctcatccaaggtccaaaggtgaagccaaagcaatgttttaaggcaaaaagggtttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

695

Amino Acids

77.51

Weight (kDa)

9.61

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1842, 1944
Acc36I ACCTGC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 790
AccB7I CCANNNNNTGG 1 cut(s) 837
AccII CGCG 3 cut(s) 196, 999, 1188
AciI CCGC 9 cut(s) 59, 194, 239, 263, 428, 997, 1188, 1457, 1539
AclWI GGATC 3 cut(s) 700, 924, 1661
AcoI YGGCCR 1 cut(s) 1477
AcsI RAATTY 2 cut(s) 1087, 1602
AcuI CTGAAG 3 cut(s) 165, 1128, 1146
AfaI GTAC 3 cut(s) 872, 1185, 1931
AfiI CCNNNNNNNGG 4 cut(s) 139, 183, 684, 837
AflII CTTAAG 3 cut(s) 46, 392, 557
AgsI TTSAA 7 cut(s) 605, 850, 978, 1093, 1519, 1529, 1898
AjnI CCWGG 2 cut(s) 1071, 1479
Alw26I GTCTC 2 cut(s) 1873, 1886
AlwI GGATC 3 cut(s) 700, 924, 1661
AoxI GGCC 1 cut(s) 1477
ApeKI GCWGC 9 cut(s) 218, 242, 272, 407, 437, 659, 827, 1373, 1485
ApoI RAATTY 2 cut(s) 1087, 1602
ArsI GACNNNNNNTTYG 6 cut(s) 293, 323, 325, 355, 488, 520
AseI ATTAAT 1 cut(s) 1743
Asp700I GAANNNNTTC 2 cut(s) 956, 1389
AspA2I CCTAGG 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 1573, 2039
AsuC2I CCSGG 1 cut(s) 1176
AsuHPI GGTGA 3 cut(s) 634, 1723, 2059
AvaII GGWCC 2 cut(s) 1573, 2039
AvrII CCTAGG 1 cut(s) 182
BalI TGGCCA 1 cut(s) 1479
BanI GGYRCC 1 cut(s) 790
BbsI GAAGAC 1 cut(s) 1707
BbvCI CCTCAGC 1 cut(s) 1317
BbvI GCAGC 9 cut(s) 205, 229, 284, 394, 449, 671, 814, 1385, 1497
BccI CCATC 7 cut(s) 16, 397, 562, 632, 1339, 1409, 1607
BcgI CGANNNNNNTGC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 1073, 1481
BciVI GTATCC 1 cut(s) 1044
BcnI CCSGG 1 cut(s) 1176
BcoDI GTCTC 2 cut(s) 1873, 1886
BfaI CTAG 8 cut(s) 33, 183, 228, 591, 887, 1289, 1362, 1494
BfmI CTRYAG 2 cut(s) 39, 1933
BfrI CTTAAG 3 cut(s) 46, 392, 557
BfuAI ACCTGC 1 cut(s) 133
BfuI GTATCC 1 cut(s) 1044
BglI GCCNNNNNGGC 1 cut(s) 170
BglII AGATCT 2 cut(s) 35, 1821
BlnI CCTAGG 1 cut(s) 182
BmcAI AGTACT 1 cut(s) 1931
Bme1390I CCNGG 3 cut(s) 1073, 1176, 1481
Bme18I GGWCC 2 cut(s) 1573, 2039
BmgT120I GGNCC 2 cut(s) 1573, 2039
BmiI GGNNCC 4 cut(s) 6, 645, 792, 1659
BmrFI CCNGG 3 cut(s) 1073, 1176, 1481
BmsI GCATC 8 cut(s) 226, 305, 470, 660, 769, 830, 1416, 1991
BpiI GAAGAC 1 cut(s) 1707
BpmI CTGGAG 2 cut(s) 900, 1846
Bpu10I CCTNAGC 2 cut(s) 663, 1317
BpuMI CCSGG 1 cut(s) 1176
Bsa29I ATCGAT 1 cut(s) 928
BsaBI GATNNNNATC 1 cut(s) 924
BsaJI CCNNGG 6 cut(s) 182, 345, 510, 1480, 1680, 2035
BsaXI ACNNNNNCTCC 4 cut(s) 659, 689, 1016, 1046
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 183, 684, 837
Bse1I ACTGG 8 cut(s) 319, 379, 484, 544, 816, 872, 1086, 1791
Bse3DI GCAATG 2 cut(s) 1311, 2066
Bse8I GATNNNNATC 1 cut(s) 924
BseBI CCWGG 2 cut(s) 1073, 1481
BseCI ATCGAT 1 cut(s) 928
BseDI CCNNGG 6 cut(s) 182, 345, 510, 1480, 1680, 2035
BseJI GATNNNNATC 1 cut(s) 924
BseLI CCNNNNNNNGG 4 cut(s) 139, 183, 684, 837
BseMI GCAATG 2 cut(s) 1311, 2066
BseMII CTCAG 4 cut(s) 236, 1158, 1308, 1868
BseNI ACTGG 8 cut(s) 319, 379, 484, 544, 816, 872, 1086, 1791
BseRI GAGGAG 4 cut(s) 1310, 1607, 1664, 1667
BseXI GCAGC 9 cut(s) 205, 229, 284, 394, 449, 671, 814, 1385, 1497
BsgI GTGCAG 1 cut(s) 83
Bsh1236I CGCG 3 cut(s) 196, 999, 1188
Bsh1285I CGRYCG 3 cut(s) 200, 263, 428
BshFI GGCC 1 cut(s) 1479
BshNI GGYRCC 1 cut(s) 790
BshVI ATCGAT 1 cut(s) 928
BsiEI CGRYCG 3 cut(s) 200, 263, 428
BsiSI CCGG 1 cut(s) 1176
BslFI GGGAC 1 cut(s) 1158
BslI CCNNNNNNNGG 4 cut(s) 139, 183, 684, 837
BsmAI GTCTC 2 cut(s) 1873, 1886
BsmFI GGGAC 1 cut(s) 1158
BsnI GGCC 1 cut(s) 1479
Bsp143I GATC 6 cut(s) 35, 197, 705, 929, 1666, 1821
BspACI CCGC 9 cut(s) 59, 194, 239, 263, 428, 997, 1188, 1457, 1539
BspANI GGCC 1 cut(s) 1479
BspCNI CTCAG 4 cut(s) 235, 1159, 1309, 1869
BspDI ATCGAT 1 cut(s) 928
BspFNI CGCG 3 cut(s) 196, 999, 1188
BspLI GGNNCC 4 cut(s) 6, 645, 792, 1659
BspMAI CTGCAG 1 cut(s) 1937
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 3 cut(s) 700, 924, 1661
BspT107I GGYRCC 1 cut(s) 790
BspTI CTTAAG 3 cut(s) 46, 392, 557
BsrDI GCAATG 2 cut(s) 1311, 2066
BsrI ACTGG 8 cut(s) 319, 379, 484, 544, 816, 872, 1086, 1791
BssECI CCNNGG 6 cut(s) 182, 345, 510, 1480, 1680, 2035
BssMI GATC 6 cut(s) 35, 197, 705, 929, 1666, 1821
BssT1I CCWWGG 3 cut(s) 182, 1680, 2035
Bst2UI CCWGG 2 cut(s) 1073, 1481
Bst4CI ACNGT 3 cut(s) 88, 909, 1852
Bst6I CTCTTC 3 cut(s) 1088, 1908, 2021
BstAFI CTTAAG 3 cut(s) 46, 392, 557
BstAPI GCANNNNNTGC 1 cut(s) 827
BstC8I GCNNGC 3 cut(s) 16, 697, 1431
BstDEI CTNAG 6 cut(s) 222, 663, 1167, 1317, 1877, 2085
BstEII GGTNACC 1 cut(s) 571
BstFNI CGCG 3 cut(s) 196, 999, 1188
BstKTI GATC 6 cut(s) 38, 200, 708, 932, 1669, 1824
BstMAI GTCTC 2 cut(s) 1873, 1886
BstMBI GATC 6 cut(s) 35, 197, 705, 929, 1666, 1821
BstMCI CGRYCG 3 cut(s) 200, 263, 428
BstMWI GCNNNNNNNGC 7 cut(s) 11, 170, 215, 827, 1485, 1547, 1862
BstNI CCWGG 2 cut(s) 1073, 1481
BstPI GGTNACC 1 cut(s) 571
BstSCI CCNGG 3 cut(s) 1071, 1174, 1479
BstSFI CTRYAG 2 cut(s) 39, 1933
BstUI CGCG 3 cut(s) 196, 999, 1188
BstV1I GCAGC 9 cut(s) 205, 229, 284, 394, 449, 671, 814, 1385, 1497
BstV2I GAAGAC 1 cut(s) 1707
BstX2I RGATCY 3 cut(s) 35, 705, 1821
BstXI CCANNNNNNTGG 1 cut(s) 801
BstYI RGATCY 3 cut(s) 35, 705, 1821
Bsu15I ATCGAT 1 cut(s) 928
BsuI GTATCC 1 cut(s) 1044
BsuRI GGCC 1 cut(s) 1479
BsuTUI ATCGAT 1 cut(s) 928
BtsI GCAGTG 1 cut(s) 1674
BtsIMutI CAGTG 4 cut(s) 372, 537, 1674, 1784
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 3 cut(s) 16, 697, 1431
Cfr13I GGNCC 2 cut(s) 1573, 2039
ClaI ATCGAT 1 cut(s) 928
Csp6I GTAC 3 cut(s) 871, 1184, 1930
CviAII CATG 1 cut(s) 577
CviQI GTAC 3 cut(s) 871, 1184, 1930
DdeI CTNAG 6 cut(s) 222, 663, 1167, 1317, 1877, 2085
DpnI GATC 6 cut(s) 37, 199, 707, 931, 1668, 1823
DpnII GATC 6 cut(s) 35, 197, 705, 929, 1666, 1821
EaeI YGGCCR 1 cut(s) 1477
Eam1104I CTCTTC 3 cut(s) 1088, 1908, 2021
EarI CTCTTC 3 cut(s) 1088, 1908, 2021
Eco130I CCWWGG 3 cut(s) 182, 1680, 2035
Eco47I GGWCC 2 cut(s) 1573, 2039
Eco57I CTGAAG 3 cut(s) 165, 1128, 1146
Eco91I GGTNACC 1 cut(s) 571
EcoO65I GGTNACC 1 cut(s) 571
EcoRII CCWGG 2 cut(s) 1071, 1479
EcoT14I CCWWGG 3 cut(s) 182, 1680, 2035
ErhI CCWWGG 3 cut(s) 182, 1680, 2035
FaeI CATG 1 cut(s) 580
FalI AAGNNNNNCTT 3 cut(s) 1360, 1392, 2068
FaqI GGGAC 1 cut(s) 1158
FatI CATG 1 cut(s) 576
FspBI CTAG 8 cut(s) 33, 183, 228, 591, 887, 1289, 1362, 1494
GsuI CTGGAG 2 cut(s) 900, 1846
HaeIII GGCC 1 cut(s) 1479
HapII CCGG 1 cut(s) 1176
Hin1II CATG 1 cut(s) 580
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 8 cut(s) 350, 515, 580, 1390, 1436, 1689, 1712, 1879
HpaII CCGG 1 cut(s) 1176
HphI GGTGA 3 cut(s) 634, 1723, 2059
Hpy166II GTNNAC 2 cut(s) 122, 312
Hpy188III TCNNGA 8 cut(s) 776, 850, 887, 896, 917, 1166, 1695, 1825
Hpy8I GTNNAC 2 cut(s) 122, 312
HpyCH4III ACNGT 3 cut(s) 88, 909, 1852
HpyCH4IV ACGT 3 cut(s) 73, 956, 1761
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 170, 215, 827, 1485, 1547, 1862
HpyF3I CTNAG 6 cut(s) 222, 663, 1167, 1317, 1877, 2085
HpySE526I ACGT 3 cut(s) 73, 956, 1761
Hsp92II CATG 1 cut(s) 580
Kzo9I GATC 6 cut(s) 35, 197, 705, 929, 1666, 1821
LmnI GCTCC 6 cut(s) 10, 643, 1348, 1618, 1663, 1827
Lsp1109I GCAGC 9 cut(s) 205, 229, 284, 394, 449, 671, 814, 1385, 1497
LweI GCATC 8 cut(s) 226, 305, 470, 660, 769, 830, 1416, 1991
MaeI CTAG 8 cut(s) 33, 183, 228, 591, 887, 1289, 1362, 1494
MaeII ACGT 3 cut(s) 73, 956, 1761
MaeIII GTNAC 6 cut(s) 370, 535, 571, 1047, 1450, 1729
MalI GATC 6 cut(s) 37, 199, 707, 931, 1668, 1823
MboI GATC 6 cut(s) 35, 197, 705, 929, 1666, 1821
MboII GAAGA 9 cut(s) 817, 1088, 1105, 1268, 1294, 1394, 1707, 1925, 2008
MfeI CAATTG 2 cut(s) 648, 1905
MflI RGATCY 3 cut(s) 35, 705, 1821
MlsI TGGCCA 1 cut(s) 1479
MluNI TGGCCA 1 cut(s) 1479
MlyI GAGTC 3 cut(s) 1430, 1721, 1888
MmeI TCCRAC 1 cut(s) 1320
Mox20I TGGCCA 1 cut(s) 1479
MroXI GAANNNNTTC 2 cut(s) 956, 1389
MscI TGGCCA 1 cut(s) 1479
MseI TTAA 7 cut(s) 47, 393, 558, 1278, 1743, 1919, 2067
Msp20I TGGCCA 1 cut(s) 1479
MspA1I CMGCKG 4 cut(s) 827, 1433, 1459, 1488
MspCI CTTAAG 3 cut(s) 46, 392, 557
MspI CCGG 1 cut(s) 1176
MspR9I CCNGG 3 cut(s) 1073, 1176, 1481
MunI CAATTG 2 cut(s) 648, 1905
MvaI CCWGG 2 cut(s) 1073, 1481
MvnI CGCG 3 cut(s) 196, 999, 1188
MwoI GCNNNNNNNGC 7 cut(s) 11, 170, 215, 827, 1485, 1547, 1862
NciI CCSGG 1 cut(s) 1176
NdeII GATC 6 cut(s) 35, 197, 705, 929, 1666, 1821
NlaIII CATG 1 cut(s) 580
NlaIV GGNNCC 4 cut(s) 6, 645, 792, 1659
NmuCI GTSAC 5 cut(s) 370, 535, 1047, 1450, 1729
PdmI GAANNNNTTC 2 cut(s) 956, 1389
PfeI GAWTC 5 cut(s) 350, 515, 580, 1390, 1689
PflMI CCANNNNNTGG 1 cut(s) 837
PfoI TCCNGGA 1 cut(s) 1071
Ple19I CGATCG 1 cut(s) 200
PleI GAGTC 3 cut(s) 1430, 1720, 1887
PpsI GAGTC 3 cut(s) 1430, 1720, 1887
PshBI ATTAAT 1 cut(s) 1743
PsiI TTATAA 2 cut(s) 1842, 1944
Psp6I CCWGG 2 cut(s) 1071, 1479
PspEI GGTNACC 1 cut(s) 571
PspGI CCWGG 2 cut(s) 1071, 1479
PspN4I GGNNCC 4 cut(s) 6, 645, 792, 1659
PspPI GGNCC 2 cut(s) 1573, 2039
PstI CTGCAG 1 cut(s) 1937
PsuI RGATCY 3 cut(s) 35, 705, 1821
PvuI CGATCG 1 cut(s) 200
PvuII CAGCTG 3 cut(s) 827, 1433, 1488
RsaI GTAC 3 cut(s) 872, 1185, 1931
RsaNI GTAC 3 cut(s) 871, 1184, 1930
SaqAI TTAA 7 cut(s) 47, 393, 558, 1278, 1743, 1919, 2067
Sau3AI GATC 6 cut(s) 35, 197, 705, 929, 1666, 1821
Sau96I GGNCC 2 cut(s) 1573, 2039
ScaI AGTACT 1 cut(s) 1931
SchI GAGTC 3 cut(s) 1430, 1721, 1888
ScrFI CCNGG 3 cut(s) 1073, 1176, 1481
SfaNI GCATC 8 cut(s) 226, 305, 470, 660, 769, 830, 1416, 1991
SfcI CTRYAG 2 cut(s) 39, 1933
SinI GGWCC 2 cut(s) 1573, 2039
SmlI CTYRAG 3 cut(s) 46, 392, 557
SmoI CTYRAG 3 cut(s) 46, 392, 557
SsiI CCGC 9 cut(s) 59, 194, 239, 263, 428, 997, 1188, 1457, 1539
SspMI CTAG 8 cut(s) 33, 183, 228, 591, 887, 1289, 1362, 1494
StyD4I CCNGG 3 cut(s) 1071, 1174, 1479
StyI CCWWGG 3 cut(s) 182, 1680, 2035
TaaI ACNGT 3 cut(s) 88, 909, 1852
TaiI ACGT 3 cut(s) 76, 959, 1764
TaqI TCGA 5 cut(s) 23, 200, 583, 928, 1042
TatI WGTACW 1 cut(s) 1929
TauI GCSGC 2 cut(s) 242, 1541
TfiI GAWTC 5 cut(s) 350, 515, 580, 1390, 1689
Tru1I TTAA 7 cut(s) 47, 393, 558, 1278, 1743, 1919, 2067
Tru9I TTAA 7 cut(s) 47, 393, 558, 1278, 1743, 1919, 2067
TscAI CASTG 4 cut(s) 379, 544, 1681, 1791
TseFI GTSAC 5 cut(s) 370, 535, 1047, 1450, 1729
TseI GCWGC 9 cut(s) 218, 242, 272, 407, 437, 659, 827, 1373, 1485
Tsp45I GTSAC 5 cut(s) 370, 535, 1047, 1450, 1729
TspDTI ATGAA 6 cut(s) 83, 593, 762, 960, 1214, 1614
TspGWI ACGGA 1 cut(s) 1066
TspRI CASTG 4 cut(s) 379, 544, 1681, 1791
Van91I CCANNNNNTGG 1 cut(s) 837
Vha464I CTTAAG 3 cut(s) 46, 392, 557
VpaK11BI GGWCC 2 cut(s) 1573, 2039
VspI ATTAAT 1 cut(s) 1743
XapI RAATTY 2 cut(s) 1087, 1602
XbaI TCTAGA 1 cut(s) 886
XcmI CCANNNNNNNNNTGG 3 cut(s) 289, 454, 1336
XmaJI CCTAGG 1 cut(s) 182
XmnI GAANNNNTTC 2 cut(s) 956, 1389
XspI CTAG 8 cut(s) 33, 183, 228, 591, 887, 1289, 1362, 1494
ZrmI AGTACT 1 cut(s) 1931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.