Niemann-Pick C1
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1080500.v1.1 MD16G1285200.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801 |
| rosa_laevigata | RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984 |
| rosa_multiflora | Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00312410 Rroxscaffold_7G00187620 |
| rosa_rugosa | Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700 |
| rosa_samantha | Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500 |
| rosa_wichuraiana | Rw4G014860 Rw6G026540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 69 |
| AclWI | GGATC | 1 cut(s) | 20 |
| AcsI | RAATTY | 1 cut(s) | 320 |
| AgsI | TTSAA | 3 cut(s) | 130, 136, 319 |
| AluBI | AGCT | 1 cut(s) | 17 |
| AluI | AGCT | 1 cut(s) | 17 |
| AlwI | GGATC | 1 cut(s) | 20 |
| AoxI | GGCC | 1 cut(s) | 297 |
| ApoI | RAATTY | 1 cut(s) | 320 |
| AseI | ATTAAT | 1 cut(s) | 231 |
| BbsI | GAAGAC | 1 cut(s) | 281 |
| BfaI | CTAG | 1 cut(s) | 325 |
| BmsI | GCATC | 1 cut(s) | 200 |
| BpiI | GAAGAC | 1 cut(s) | 281 |
| BpuEI | CTTGAG | 1 cut(s) | 305 |
| BseRI | GAGGAG | 1 cut(s) | 9 |
| BshFI | GGCC | 1 cut(s) | 299 |
| BsnI | GGCC | 1 cut(s) | 299 |
| Bsp143I | GATC | 2 cut(s) | 25, 175 |
| BspACI | CCGC | 1 cut(s) | 69 |
| BspANI | GGCC | 1 cut(s) | 299 |
| BspPI | GGATC | 1 cut(s) | 20 |
| BssMI | GATC | 2 cut(s) | 25, 175 |
| Bst4CI | ACNGT | 1 cut(s) | 170 |
| BstKTI | GATC | 2 cut(s) | 28, 178 |
| BstMBI | GATC | 2 cut(s) | 25, 175 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 14 |
| BstV2I | GAAGAC | 1 cut(s) | 281 |
| BsuRI | GGCC | 1 cut(s) | 299 |
| BtsI | GCAGTG | 1 cut(s) | 33 |
| BtsIMutI | CAGTG | 1 cut(s) | 33 |
| CviAII | CATG | 1 cut(s) | 267 |
| CviJI | RGCY | 2 cut(s) | 17, 299 |
| CviKI_1 | RGCY | 2 cut(s) | 17, 299 |
| DpnI | GATC | 2 cut(s) | 27, 177 |
| DpnII | GATC | 2 cut(s) | 25, 175 |
| DraI | TTTAAA | 1 cut(s) | 120 |
| Eco147I | AGGCCT | 1 cut(s) | 299 |
| FaeI | CATG | 1 cut(s) | 270 |
| FaiI | YATR | 5 cut(s) | 10, 12, 52, 174, 268 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 38 |
| FatI | CATG | 1 cut(s) | 266 |
| FspBI | CTAG | 1 cut(s) | 325 |
| HaeIII | GGCC | 1 cut(s) | 299 |
| Hin1II | CATG | 1 cut(s) | 270 |
| HinfI | GANTC | 3 cut(s) | 110, 148, 156 |
| Hpy166II | GTNNAC | 1 cut(s) | 220 |
| Hpy188III | TCNNGA | 3 cut(s) | 23, 101, 284 |
| Hpy8I | GTNNAC | 1 cut(s) | 220 |
| HpyCH4III | ACNGT | 1 cut(s) | 170 |
| HpyCH4V | TGCA | 2 cut(s) | 8, 38 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 14 |
| Hsp92II | CATG | 1 cut(s) | 270 |
| Kzo9I | GATC | 2 cut(s) | 25, 175 |
| LmnI | GCTCC | 1 cut(s) | 22 |
| LpnPI | CCDG | 3 cut(s) | 114, 173, 228 |
| LweI | GCATC | 1 cut(s) | 200 |
| MaeI | CTAG | 1 cut(s) | 325 |
| MalI | GATC | 2 cut(s) | 27, 177 |
| MboI | GATC | 2 cut(s) | 25, 175 |
| MboII | GAAGA | 1 cut(s) | 286 |
| MluCI | AATT | 2 cut(s) | 105, 320 |
| MlyI | GAGTC | 3 cut(s) | 119, 157, 165 |
| MnlI | CCTC | 3 cut(s) | 30, 95, 232 |
| MseI | TTAA | 3 cut(s) | 119, 203, 231 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 14 |
| NdeII | GATC | 2 cut(s) | 25, 175 |
| NlaIII | CATG | 1 cut(s) | 270 |
| PceI | AGGCCT | 1 cut(s) | 299 |
| PleI | GAGTC | 3 cut(s) | 118, 156, 164 |
| PpsI | GAGTC | 3 cut(s) | 118, 156, 164 |
| PshBI | ATTAAT | 1 cut(s) | 231 |
| SaqAI | TTAA | 3 cut(s) | 119, 203, 231 |
| Sau3AI | GATC | 2 cut(s) | 25, 175 |
| SchI | GAGTC | 3 cut(s) | 119, 157, 165 |
| SetI | ASST | 3 cut(s) | 19, 46, 281 |
| SfaNI | GCATC | 1 cut(s) | 200 |
| SgeI | CNNG | 9 cut(s) | 35, 113, 142, 153, 164, 200, 227, 279, 296 |
| SmlI | CTYRAG | 1 cut(s) | 284 |
| SmoI | CTYRAG | 1 cut(s) | 284 |
| Sse9I | AATT | 2 cut(s) | 105, 320 |
| SseBI | AGGCCT | 1 cut(s) | 299 |
| SsiI | CCGC | 1 cut(s) | 69 |
| SspMI | CTAG | 1 cut(s) | 325 |
| StuI | AGGCCT | 1 cut(s) | 299 |
| TaaI | ACNGT | 1 cut(s) | 170 |
| TasI | AATT | 2 cut(s) | 105, 320 |
| Tru1I | TTAA | 3 cut(s) | 119, 203, 231 |
| Tru9I | TTAA | 3 cut(s) | 119, 203, 231 |
| TscAI | CASTG | 1 cut(s) | 40 |
| TspDTI | ATGAA | 1 cut(s) | 261 |
| TspRI | CASTG | 1 cut(s) | 40 |
| VspI | ATTAAT | 1 cut(s) | 231 |
| XapI | RAATTY | 1 cut(s) | 320 |
| XspI | CTAG | 1 cut(s) | 325 |