Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Reverse (-)

27865639 .. 27867644

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1129800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGATAATTTATCACATTCTCGGCATCCAAACAGGTCTTCTTCCGCGAAAATGATGAACAATGGCGGCCTGTTAGCCAAGACGCTCTACGACGACGTTTACGGCGGTCCGCCGAAGTTCGGCCTCTCGTCCCTCTCGCCCCGCCTGGAGGACTACAGCGAGATTTTTGGGAGCTTCCACGCGTCACGCGCCTCGTCGATTCCGGTGCTGGATGTTCCCGCCGTCGACGAAAACGAGGTCTTCTTCGATGTGCGGAGCTCCGGCTTCGACTACAGCGAGGTCTTCGGCGGCTTTAACGGCCTGGATTTCGCCGTCGCGTACGACGACCTGGCTGATCAATCCCACGGCGGCGGCGGTGGCGATTCCTCCGACGAAGCCTGGACTCCTGCAGAATCTGGTTCTCTGTCAGAAGGGTCGGATGATTGCGGAAAGAACCAATGCTCAAATGGAGATCCTTACCAGTCATTTGATGGCAGTAAAGATTTCAGCATGGCATATCATACAGCTCATCAAACAAGCAGTAAAGATTCTTTGAACGGGATGGCATATGTAACTCAGGCACATGTTGTTCCTGGATACACATATGTGCTGGATGAAATCACTCCCTCCCAACAGACAGAACATGAGAATCCAATCCTTCAAGCAGCTGATGATAGCAAATTAAATATGAACTCCACTGTGGAAGTGGTGAATCAAAATTATCTCAAAAAGACCATGTCACTCCCCCCTAATGGTAGTTCTTCCGGACAGGCATTTGGAGACAACCTTAAACATGAAAGAGGAAATGGTAGATATGGTTCTCATCATAGAAGGCCGTTTGTGACTGTATCAGACATAAGCCTTAGAACTCAGCCCTCTCAGTTGCCACCACCCTCTCGACCACCGCCCATACTGGATGGAAGCAGTGGAGATTCTGGTAGATTGTCCTCAAATTCTAACACGATTGCTTCTGATGGGACGGCAGGTGATAGTTCACCCCGGTTCTTTGATGTCGAAGTGGATGCAAGTTCATCTGCTGCAATCTCTGCAGCTGCTATGAGAGAAGCAATGGAGAAAGCTAAAGTACAACTGAAAAGTGCAAAAGTGTTAATGCAGAGGAGGAAAGACGGATTCCAAACCCGTACAACATCGGGTTCAAAGAAAGAAATGAAAGAGAAGGAAGGAATGGTGGGGCACTTCTGTACGAGAAGATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

42.92

Weight (kDa)

5.38

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	953
Acc36I	ACCTGC	1 cut(s)	953
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	4 cut(s)	47, 182, 189, 317
AccIII	TCCGGA	1 cut(s)	743
AclWI	GGATC	1 cut(s)	446
AcsI	RAATTY	1 cut(s)	931
AfaI	GTAC	4 cut(s)	320, 1065, 1123, 1183
AfiI	CCNNNNNNNGG	3 cut(s)	119, 148, 731
AflIII	ACRYGT	2 cut(s)	180, 562
AgsI	TTSAA	3 cut(s)	535, 641, 1137
AjnI	CCWGG	5 cut(s)	144, 300, 327, 377, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AleI	CACNNNNGTG	1 cut(s)	584
AluBI	AGCT	6 cut(s)	174, 258, 506, 647, 1031, 1058
AluI	AGCT	6 cut(s)	174, 258, 506, 647, 1031, 1058
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	753
AlwI	GGATC	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	395
Aor13HI	TCCGGA	1 cut(s)	743
AoxI	GGCC	4 cut(s)	67, 121, 298, 812
ApeKI	GCWGC	4 cut(s)	644, 1016, 1028, 1031
ApoI	RAATTY	1 cut(s)	931
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	979
AsuHPI	GGTGA	3 cut(s)	700, 966, 977
AvaII	GGWCC	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	1176
BanII	GRGCYC	1 cut(s)	260
BbsI	GAAGAC	3 cut(s)	30, 232, 274
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	4 cut(s)	656, 1003, 1018, 1040
BccI	CCATC	5 cut(s)	464, 535, 890, 947, 1185
BceAI	ACGGC	7 cut(s)	118, 206, 296, 313, 361, 799, 975
BcgI	CGANNNNNNTGC	4 cut(s)	187, 221, 983, 1017
BciT130I	CCWGG	5 cut(s)	146, 302, 329, 379, 573
BciVI	GTATCC	1 cut(s)	569
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	979
BcoDI	GTCTC	1 cut(s)	753
BfmI	CTRYAG	4 cut(s)	154, 271, 387, 1026
BfuAI	ACCTGC	1 cut(s)	953
BfuI	GTATCC	1 cut(s)	569
BisI	GCNGC	8 cut(s)	67, 289, 349, 352, 645, 1017, 1029, 1032
BlsI	GCNGC	8 cut(s)	68, 290, 350, 353, 646, 1018, 1030, 1033
Bme1390I	CCNGG	6 cut(s)	146, 302, 329, 379, 573, 979
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	6 cut(s)	146, 302, 329, 379, 573, 979
BmsI	GCATC	2 cut(s)	34, 991
BpiI	GAAGAC	3 cut(s)	30, 232, 274
BpmI	CTGGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	979
BsaJI	CCNNGG	2 cut(s)	343, 977
BsaWI	WCCGGW	2 cut(s)	202, 743
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 148, 731
Bse1I	ACTGG	2 cut(s)	460, 897
Bse3DI	GCAATG	1 cut(s)	1053
BseAI	TCCGGA	1 cut(s)	743
BseBI	CCWGG	5 cut(s)	146, 302, 329, 379, 573
BseDI	CCNNGG	2 cut(s)	343, 977
BseGI	GGATG	7 cut(s)	25, 217, 424, 546, 598, 901, 1006
BseLI	CCNNNNNNNGG	3 cut(s)	119, 148, 731
BseMI	GCAATG	1 cut(s)	1053
BseMII	CTCAG	3 cut(s)	569, 863, 872
BseNI	ACTGG	2 cut(s)	460, 897
BseRI	GAGGAG	1 cut(s)	1111
BseSI	GKGCMC	1 cut(s)	1176
BseXI	GCAGC	4 cut(s)	656, 1003, 1018, 1040
Bsh1236I	CGCG	4 cut(s)	47, 182, 189, 317
BshFI	GGCC	4 cut(s)	69, 123, 300, 814
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	4 cut(s)	203, 261, 744, 979
BsiWI	CGTACG	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	115, 970
BslI	CCNNNNNNNGG	3 cut(s)	119, 148, 731
BsmAI	GTCTC	1 cut(s)	753
BsmFI	GGGAC	2 cut(s)	115, 970
BsnI	GGCC	4 cut(s)	69, 123, 300, 814
Bsp1286I	GDGCHC	2 cut(s)	260, 1176
Bsp13I	TCCGGA	1 cut(s)	743
Bsp143I	GATC	2 cut(s)	334, 451
BspANI	GGCC	4 cut(s)	69, 123, 300, 814
BspCNI	CTCAG	3 cut(s)	568, 862, 871
BspEI	TCCGGA	1 cut(s)	743
BspFNI	CGCG	4 cut(s)	47, 182, 189, 317
BspMAI	CTGCAG	2 cut(s)	391, 1030
BspMI	ACCTGC	1 cut(s)	953
BspPI	GGATC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	1053
BsrI	ACTGG	2 cut(s)	460, 897
BssECI	CCNNGG	2 cut(s)	343, 977
BssMI	GATC	2 cut(s)	334, 451
Bst2UI	CCWGG	5 cut(s)	146, 302, 329, 379, 573
Bst4CI	ACNGT	2 cut(s)	679, 826
BstAPI	GCANNNNNTGC	1 cut(s)	1025
BstDEI	CTNAG	4 cut(s)	555, 842, 849, 858
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	7 cut(s)	25, 217, 424, 546, 598, 901, 1006
BstFNI	CGCG	4 cut(s)	47, 182, 189, 317
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	2 cut(s)	337, 454
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	2 cut(s)	334, 451
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 297, 357, 1025
BstNI	CCWGG	5 cut(s)	146, 302, 329, 379, 573
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	6 cut(s)	144, 300, 327, 377, 571, 977
BstSFI	CTRYAG	4 cut(s)	154, 271, 387, 1026
BstSLI	GKGCMC	1 cut(s)	1176
BstUI	CGCG	4 cut(s)	47, 182, 189, 317
BstV1I	GCAGC	4 cut(s)	656, 1003, 1018, 1040
BstV2I	GAAGAC	3 cut(s)	30, 232, 274
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuI	GTATCC	1 cut(s)	569
BsuRI	GGCC	4 cut(s)	69, 123, 300, 814
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	7 cut(s)	25, 217, 424, 546, 598, 901, 1006
BtsI	GCAGTG	1 cut(s)	910
BtsIMutI	CAGTG	2 cut(s)	675, 910
BveI	ACCTGC	1 cut(s)	953
CaiI	CAGNNNCTG	1 cut(s)	395
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	107
CpoI	CGGWCCG	1 cut(s)	107
CseI	GACGC	2 cut(s)	91, 171
Csp6I	GTAC	4 cut(s)	319, 1064, 1122, 1182
CspI	CGGWCCG	1 cut(s)	107
CviAII	CATG	5 cut(s)	490, 563, 623, 715, 773
CviQI	GTAC	4 cut(s)	319, 1064, 1122, 1182
DdeI	CTNAG	4 cut(s)	555, 842, 849, 858
DpnI	GATC	2 cut(s)	336, 453
DpnII	GATC	2 cut(s)	334, 451
EciI	GGCGGA	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	258
EcoRII	CCWGG	5 cut(s)	144, 300, 327, 377, 571
EcoT38I	GRGCYC	1 cut(s)	260
FaeI	CATG	5 cut(s)	493, 566, 626, 718, 776
FaqI	GGGAC	2 cut(s)	115, 970
FatI	CATG	5 cut(s)	489, 562, 622, 714, 772
FauI	CCCGC	2 cut(s)	149, 226
FauNDI	CATATG	2 cut(s)	547, 583
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	8 cut(s)	67, 289, 349, 352, 645, 1017, 1029, 1032
FokI	GGATG	7 cut(s)	12, 224, 431, 553, 605, 908, 1013
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	8 cut(s)	67, 289, 349, 352, 645, 1017, 1029, 1032
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	8 cut(s)	67, 289, 349, 352, 645, 1017, 1029, 1032
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	4 cut(s)	69, 123, 300, 814
HapII	CCGG	4 cut(s)	203, 261, 744, 979
HgaI	GACGC	2 cut(s)	91, 171
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	5 cut(s)	493, 566, 626, 718, 776
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	9 cut(s)	199, 362, 382, 392, 527, 628, 691, 911, 1110
HpaII	CCGG	4 cut(s)	203, 261, 744, 979
HphI	GGTGA	3 cut(s)	700, 966, 977
Hpy166II	GTNNAC	3 cut(s)	100, 226, 974
Hpy188I	TCNGA	5 cut(s)	370, 409, 418, 832, 952
Hpy188III	TCNNGA	2 cut(s)	744, 876
Hpy8I	GTNNAC	3 cut(s)	100, 226, 974
Hpy99I	CGWCG	8 cut(s)	95, 98, 199, 227, 230, 317, 326, 374
HpyAV	CCTTC	5 cut(s)	404, 647, 804, 1150, 1154
HpyCH4III	ACNGT	2 cut(s)	679, 826
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	6 cut(s)	389, 1004, 1019, 1028, 1079, 1093
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 297, 357, 1025
HpyF3I	CTNAG	4 cut(s)	555, 842, 849, 858
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	5 cut(s)	493, 566, 626, 718, 776
HspAI	GCGC	1 cut(s)	189
Kpn2I	TCCGGA	1 cut(s)	743
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	334, 451
LmnI	GCTCC	3 cut(s)	171, 255, 263
Lsp1109I	GCAGC	4 cut(s)	656, 1003, 1018, 1040
LweI	GCATC	2 cut(s)	34, 991
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	4 cut(s)	183, 550, 717, 820
MalI	GATC	2 cut(s)	336, 453
MboI	GATC	2 cut(s)	334, 451
MboII	GAAGA	6 cut(s)	30, 33, 232, 235, 274, 732
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	260, 1176
MluCI	AATT	4 cut(s)	7, 659, 697, 931
MluI	ACGCGT	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	2 cut(s)	393, 396
MroI	TCCGGA	1 cut(s)	743
MseI	TTAA	4 cut(s)	294, 662, 768, 1088
MslI	CAYNNNNRTG	1 cut(s)	584
MspA1I	CMGCKG	2 cut(s)	647, 1031
MspI	CCGG	4 cut(s)	203, 261, 744, 979
MspR9I	CCNGG	6 cut(s)	146, 302, 329, 379, 573, 979
MvaI	CCWGG	5 cut(s)	146, 302, 329, 379, 573
MvnI	CGCG	4 cut(s)	47, 182, 189, 317
MwoI	GCNNNNNNNGC	4 cut(s)	188, 297, 357, 1025
NciI	CCSGG	1 cut(s)	979
NdeI	CATATG	2 cut(s)	547, 583
NdeII	GATC	2 cut(s)	334, 451
NlaIII	CATG	5 cut(s)	493, 566, 626, 718, 776
NmuCI	GTSAC	3 cut(s)	183, 717, 820
NspI	RCATGY	1 cut(s)	566
OliI	CACNNNNGTG	1 cut(s)	584
PaqCI	CACCTGC	1 cut(s)	953
PciI	ACATGT	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	3 cut(s)	231, 273, 321
PfeI	GAWTC	8 cut(s)	199, 362, 392, 527, 628, 691, 911, 1110
Pfl23II	CGTACG	1 cut(s)	318
PflFI	GACNNNGTC	1 cut(s)	715
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	8 cut(s)	68, 290, 350, 353, 646, 1018, 1030, 1033
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PscI	ACATGT	1 cut(s)	562
Psp124BI	GAGCTC	1 cut(s)	260
Psp6I	CCWGG	5 cut(s)	144, 300, 327, 377, 571
PspGI	CCWGG	5 cut(s)	144, 300, 327, 377, 571
PspLI	CGTACG	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	107
PsrI	GAACNNNNNNTAC	2 cut(s)	781, 813
PstI	CTGCAG	2 cut(s)	391, 1030
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	451
PsyI	GACNNNGTC	1 cut(s)	715
PvuII	CAGCTG	2 cut(s)	647, 1031
RsaI	GTAC	4 cut(s)	320, 1065, 1123, 1183
RsaNI	GTAC	4 cut(s)	319, 1064, 1122, 1182
RseI	CAYNNNNRTG	1 cut(s)	584
Rsr2I	CGGWCCG	1 cut(s)	107
RsrII	CGGWCCG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	260
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	4 cut(s)	294, 662, 768, 1088
SatI	GCNGC	8 cut(s)	67, 289, 349, 352, 645, 1017, 1029, 1032
Sau3AI	GATC	2 cut(s)	334, 451
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	6 cut(s)	146, 302, 329, 379, 573, 979
SduI	GDGCHC	2 cut(s)	260, 1176
SfaNI	GCATC	2 cut(s)	34, 991
SfcI	CTRYAG	4 cut(s)	154, 271, 387, 1026
SgrDI	CGTCGACG	1 cut(s)	224
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	4 cut(s)	7, 659, 697, 931
SstI	GAGCTC	1 cut(s)	260
StyD4I	CCNGG	6 cut(s)	144, 300, 327, 377, 571, 977
TaaI	ACNGT	2 cut(s)	679, 826
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	6 cut(s)	197, 225, 246, 267, 877, 993
TasI	AATT	4 cut(s)	7, 659, 697, 931
TatI	WGTACW	1 cut(s)	1063
TauI	GCSGC	4 cut(s)	69, 291, 351, 354
TfiI	GAWTC	8 cut(s)	199, 362, 392, 527, 628, 691, 911, 1110
Tru1I	TTAA	4 cut(s)	294, 662, 768, 1088
Tru9I	TTAA	4 cut(s)	294, 662, 768, 1088
TscAI	CASTG	2 cut(s)	682, 910
TseFI	GTSAC	3 cut(s)	183, 717, 820
TseI	GCWGC	4 cut(s)	644, 1016, 1028, 1031
Tsp45I	GTSAC	3 cut(s)	183, 717, 820
TspDTI	ATGAA	6 cut(s)	71, 609, 683, 789, 999, 1163
TspGWI	ACGGA	1 cut(s)	1122
TspRI	CASTG	2 cut(s)	682, 910
Tth111I	GACNNNGTC	1 cut(s)	715
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	1 cut(s)	931
XceI	RCATGY	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	3 cut(s)	443, 467, 682
XmiI	GTMKAC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.