Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Reverse (-)

62389064 .. 62389679

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG448500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCAGCAAATGCTCTAGATCTGGAGAGTCTACAACCTCCACCGCCGACTGGATTTCCGATACAATCCAAGGTGCATCCTTACCCCACGTCGAGCTCCACACTGGAAAGAACGACTGGGCTTGGAGAGCCCAACCGAGAGCCCGATGAAGATAAAGACGAAGAAGAAAACAAATCTCCACCGGAGGGGAACATGCTTCGCGCCTCCTTGATTCCAGTGCTAAAGGTCCCCGTCGCAGACGCAGTCGATGAAGATGACAATGAGGAATTCTTCAATGTGCGCTGCTTCGGCTTCGACTACTCGGAGGTCTTTGGAGGCTTCAATTGCCTGGATTTCGTCGTCGCGTACGACAACCTAGTCAAGCAACCCTACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.85

Weight (kDa)

4.13

Isoelectric Point (pI)

63.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	31
AccII	CGCG	2 cut(s)	201, 344
AciI	CCGC	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	266
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	50, 185
AgsI	TTSAA	2 cut(s)	274, 322
AjiI	CACGTC	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw21I	GWGCWC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	203, 282
AspS9I	GGNCC	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	226
BanII	GRGCYC	3 cut(s)	98, 132, 144
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	329
BfaI	CTAG	2 cut(s)	17, 356
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	226
BmgBI	CACGTC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 185
Bse1I	ACTGG	4 cut(s)	55, 108, 121, 215
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	50, 185
BseNI	ACTGG	4 cut(s)	55, 108, 121, 215
BseXI	GCAGC	1 cut(s)	269
Bsh1236I	CGCG	2 cut(s)	201, 344
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	182
BsiWI	CGTACG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	50, 185
BsmFI	GGGAC	1 cut(s)	212
Bsp1286I	GDGCHC	3 cut(s)	98, 132, 144
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	44
BspFNI	CGCG	2 cut(s)	201, 344
BspLI	GGNNCC	1 cut(s)	228
BsrI	ACTGG	4 cut(s)	55, 108, 121, 215
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	2 cut(s)	201, 344
BstHHI	GCGC	2 cut(s)	203, 282
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 288, 324
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	327
BstUI	CGCG	2 cut(s)	201, 344
BstV1I	GCAGC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BtrI	CACGTC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	101, 222
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	2 cut(s)	203, 282
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	7 cut(s)	96, 121, 130, 142, 291, 318, 375
CviKI_1	RGCY	7 cut(s)	96, 121, 130, 142, 291, 318, 375
CviQI	GTAC	1 cut(s)	346
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	3 cut(s)	98, 132, 144
Eco47I	GGWCC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	3 cut(s)	98, 132, 144
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	1 cut(s)	196
FaiI	YATR	1 cut(s)	194
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	63
FriOI	GRGCYC	3 cut(s)	98, 132, 144
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	2 cut(s)	17, 356
GlaI	GCGC	2 cut(s)	202, 281
GluI	GCNGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	44
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	2 cut(s)	203, 282
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	2 cut(s)	201, 280
HinP1I	GCGC	2 cut(s)	201, 280
HinfI	GANTC	2 cut(s)	28, 211
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	60, 304
Hpy188III	TCNNGA	2 cut(s)	17, 23
Hpy8I	GTNNAC	1 cut(s)	32
Hpy99I	CGWCG	4 cut(s)	94, 236, 341, 344
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 288, 324
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	2 cut(s)	201, 280
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	9 cut(s)	8, 18, 36, 89, 102, 195, 228, 314, 341
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	17, 356
MaeII	ACGT	1 cut(s)	89
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	5 cut(s)	161, 173, 176, 262, 263
MfeI	CAATTG	1 cut(s)	322
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	3 cut(s)	98, 132, 144
MluCI	AATT	2 cut(s)	266, 322
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	6 cut(s)	48, 178, 214, 256, 298, 308
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	2 cut(s)	201, 344
MwoI	GCNNNNNNNGC	3 cut(s)	127, 288, 324
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	228
NspI	RCATGY	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	211
Pfl23II	CGTACG	1 cut(s)	345
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	284
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspLI	CGTACG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	3 cut(s)	98, 132, 144
SetI	ASST	7 cut(s)	40, 75, 92, 98, 228, 309, 357
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	226
Sse9I	AATT	2 cut(s)	266, 322
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	17, 356
SstI	GAGCTC	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	69
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	3 cut(s)	92, 246, 294
TasI	AATT	2 cut(s)	266, 322
TfiI	GAWTC	1 cut(s)	211
TscAI	CASTG	2 cut(s)	108, 222
TseI	GCWGC	1 cut(s)	282
TspDTI	ATGAA	2 cut(s)	162, 264
TspRI	CASTG	2 cut(s)	108, 222
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	266
XbaI	TCTAGA	1 cut(s)	16
XceI	RCATGY	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	2 cut(s)	17, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.