Rh2BG342700

Auxilin-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002396
Physical Location & Seq
Forward (+)
45783304 .. 45785165
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG342700.1

Sequence Viewer

Length: 327 bp
ATGAGCTTGGGAAAGTGCAGAGTTTACGATGGGCCTCCCAAGTTCGGCCTCTCCTCCTCCTCCTCCCTCTCCCCGCGCCTCGAGGACTATGATGAGATTTTCGGTGCCTTCCACGCCTCACGCGCATCCTCGATTCCCATGTTCGAGGTCTTGGTCGCCGCCGCCGCCGACGACGACGACAATGAGGAGTTCTTCAATGTGCGTAGCTCCGGCTTCGACTACTCCGAGGTCTTCGGAGGCTTCGACGGCCTGGATTTCGCCGTCGCGTACGACAACCTGGTCAAGCAACCCTACCGCAGAGAATGTGATTCCTCCGACAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.9

Weight (kDa)

4.29

Isoelectric Point (pI)

65.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AbsI CCTCGAGG 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 104
AccII CGCG 3 cut(s) 76, 123, 266
AciI CCGC 5 cut(s) 74, 159, 162, 165, 295
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 2 cut(s) 249, 276
AluBI AGCT 3 cut(s) 6, 207, 323
AluI AGCT 3 cut(s) 6, 207, 323
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 3 cut(s) 32, 46, 247
AspLEI GCGC 2 cut(s) 78, 125
AspS9I GGNCC 1 cut(s) 32
AvaI CYCGRG 1 cut(s) 80
BanI GGYRCC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 223
BccI CCATC 1 cut(s) 23
BceAI ACGGC 2 cut(s) 245, 262
BciT130I CCWGG 2 cut(s) 251, 278
BisI GCNGC 3 cut(s) 159, 162, 165
BlsI GCNGC 3 cut(s) 160, 163, 166
Bme1390I CCNGG 2 cut(s) 251, 278
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 2 cut(s) 251, 278
BmsI GCATC 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseBI CCWGG 2 cut(s) 251, 278
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 44
BseRI GAGGAG 5 cut(s) 43, 46, 49, 52, 200
BsgI GTGCAG 1 cut(s) 37
Bsh1236I CGCG 3 cut(s) 76, 123, 266
BshFI GGCC 3 cut(s) 34, 48, 249
BshNI GGYRCC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 210
BsiWI CGTACG 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 44
BsnI GGCC 3 cut(s) 34, 48, 249
BsoBI CYCGRG 1 cut(s) 80
BspACI CCGC 5 cut(s) 74, 159, 162, 165, 295
BspANI GGCC 3 cut(s) 34, 48, 249
BspFNI CGCG 3 cut(s) 76, 123, 266
BspLI GGNNCC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 251, 278
BstF5I GGATG 1 cut(s) 125
BstFNI CGCG 3 cut(s) 76, 123, 266
BstHHI GCGC 2 cut(s) 78, 125
BstMWI GCNNNNNNNGC 4 cut(s) 113, 122, 164, 246
BstNI CCWGG 2 cut(s) 251, 278
BstSCI CCNGG 2 cut(s) 249, 276
BstUI CGCG 3 cut(s) 76, 123, 266
BstV2I GAAGAC 1 cut(s) 223
BsuRI GGCC 3 cut(s) 34, 48, 249
BtsCI GGATG 1 cut(s) 125
CfoI GCGC 2 cut(s) 78, 125
Cfr13I GGNCC 1 cut(s) 32
CsiI ACCWGGT 1 cut(s) 276
Csp6I GTAC 1 cut(s) 268
CviAII CATG 1 cut(s) 139
CviJI RGCY 8 cut(s) 6, 34, 48, 207, 213, 240, 249, 323
CviKI_1 RGCY 8 cut(s) 6, 34, 48, 207, 213, 240, 249, 323
CviQI GTAC 1 cut(s) 268
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 249, 276
FaeI CATG 1 cut(s) 142
FaiI YATR 2 cut(s) 90, 140
FatI CATG 1 cut(s) 138
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 159, 162, 165
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 159, 162, 165
GlaI GCGC 2 cut(s) 77, 124
GluI GCNGC 3 cut(s) 159, 162, 165
HaeIII GGCC 3 cut(s) 34, 48, 249
HapII CCGG 1 cut(s) 210
HhaI GCGC 2 cut(s) 78, 125
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 2 cut(s) 76, 123
HinP1I GCGC 2 cut(s) 76, 123
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 2 cut(s) 133, 308
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 226, 236, 316
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 5 cut(s) 173, 176, 179, 248, 266
HpyAV CCTTC 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 122, 164, 246
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 2 cut(s) 76, 123
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 5 cut(s) 223, 236, 263, 263, 290
LweI GCATC 1 cut(s) 134
MabI ACCWGGT 1 cut(s) 276
MboII GAAGA 2 cut(s) 184, 223
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 2 cut(s) 251, 278
MvaI CCWGG 2 cut(s) 251, 278
MvnI CGCG 3 cut(s) 76, 123, 266
MwoI GCNNNNNNNGC 4 cut(s) 113, 122, 164, 246
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 80
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 240
PfeI GAWTC 2 cut(s) 133, 308
Pfl23II CGTACG 1 cut(s) 267
PkrI GCNGC 3 cut(s) 160, 163, 166
Psp6I CCWGG 2 cut(s) 249, 276
PspGI CCWGG 2 cut(s) 249, 276
PspLI CGTACG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 32
PspXI VCTCGAGB 1 cut(s) 80
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SatI GCNGC 3 cut(s) 159, 162, 165
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 2 cut(s) 251, 278
SetI ASST 6 cut(s) 8, 150, 209, 231, 279, 325
SexAI ACCWGGT 1 cut(s) 276
SfaNI GCATC 1 cut(s) 134
Sfr274I CTCGAG 1 cut(s) 80
SlaI CTCGAG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SsiI CCGC 5 cut(s) 74, 159, 162, 165, 295
StyD4I CCNGG 2 cut(s) 249, 276
TaqI TCGA 5 cut(s) 81, 131, 144, 216, 243
TauI GCSGC 3 cut(s) 161, 164, 167
TfiI GAWTC 2 cut(s) 133, 308
XhoI CTCGAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.