Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011777.1

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Forward (+)

14562 .. 15271

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011777.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgcaggtggcgaatagggagggcggtgttggggaagccgcaaaggagggaaagggaggagtttctgggaggatatggcggcggaaatggcttcgaatacagtgggatgcagactgtgtcatgagcttgggaaagtgcggagtttacagcggcccgcccaagttcgacctctcctcctccctctcctcgcgcctcgaggactacaacgagattttcggtgccttccaagcctcacgtgcctcctcgattcccgtgcttgaggtccctgtcgctgccaacgacgacaatgatttgtttttctatgtgtgtagatccaacttcgactactccaaggtctttggaggcttcgacggcctagatttcaccgtcgcgtatgacgacctggttaagcaaccctacagcggagacggtgattcctccaacaaagcttggactgcagcagaatctgggtctctcttaggagagtcgaatcattatgtgaagaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.69

Weight (kDa)

4.87

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	218
AccII	CGCG	2 cut(s)	190, 371
AciI	CCGC	8 cut(s)	24, 39, 79, 82, 138, 150, 155, 402
AclWI	GGATC	1 cut(s)	306
AcvI	CACGTG	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	2 cut(s)	126, 428
AluI	AGCT	2 cut(s)	126, 428
Alw26I	GTCTC	2 cut(s)	399, 456
AlwI	GGATC	1 cut(s)	306
AlwNI	CAGNNNCTG	1 cut(s)	446
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	2 cut(s)	151, 352
ApeKI	GCWGC	2 cut(s)	272, 437
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	152, 262
AsuHPI	GGTGA	2 cut(s)	355, 422
AsuII	TTCGAA	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	218
BbrPI	CACGTG	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	259, 449
BceAI	ACGGC	1 cut(s)	367
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	1 cut(s)	383
BcoDI	GTCTC	2 cut(s)	399, 456
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	2 cut(s)	397, 435
BisI	GCNGC	5 cut(s)	39, 80, 151, 273, 438
BlsI	GCNGC	5 cut(s)	40, 81, 152, 274, 439
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	152, 262
BmiI	GGNNCC	2 cut(s)	220, 264
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	1 cut(s)	97
Bpu14I	TTCGAA	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	278
BsaAI	YACGTR	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseRI	GAGGAG	5 cut(s)	72, 163, 166, 175, 232
BseXI	GCAGC	2 cut(s)	259, 449
Bsh1236I	CGCG	2 cut(s)	190, 371
BshFI	GGCC	2 cut(s)	153, 354
BshNI	GGYRCC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmAI	GTCTC	2 cut(s)	399, 456
BsmBI	CGTCTC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	153, 354
Bso31I	GGTCTC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	311
BspACI	CCGC	8 cut(s)	24, 39, 79, 82, 138, 150, 155, 402
BspANI	GGCC	2 cut(s)	153, 354
BspFNI	CGCG	2 cut(s)	190, 371
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	220, 264
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	94
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	456
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	4 cut(s)	102, 116, 367, 410
BstBAI	YACGTR	1 cut(s)	236
BstBI	TTCGAA	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	457
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	2 cut(s)	190, 371
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	1 cut(s)	314
BstMAI	GTCTC	2 cut(s)	399, 456
BstMBI	GATC	1 cut(s)	311
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 227, 236, 351, 434
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	2 cut(s)	397, 435
BstUI	CGCG	2 cut(s)	190, 371
BstV1I	GCAGC	2 cut(s)	259, 449
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	153, 354
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	155
CaiI	CAGNNNCTG	1 cut(s)	446
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	152, 262
CsiI	ACCWGGT	1 cut(s)	381
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	8 cut(s)	38, 91, 126, 153, 230, 345, 354, 428
CviKI_1	RGCY	8 cut(s)	38, 91, 126, 153, 230, 345, 354, 428
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	1 cut(s)	313
DpnII	GATC	1 cut(s)	311
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	262
Eco72I	CACGTG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	1 cut(s)	124
FaiI	YATR	5 cut(s)	76, 122, 303, 375, 477
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	162
Fnu4HI	GCNGC	5 cut(s)	39, 80, 151, 273, 438
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	5 cut(s)	39, 80, 151, 273, 438
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	5 cut(s)	39, 80, 151, 273, 438
HaeIII	GGCC	2 cut(s)	153, 354
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	5 cut(s)	247, 413, 443, 464, 469
HphI	GGTGA	2 cut(s)	355, 422
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	3 cut(s)	284, 353, 371
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	4 cut(s)	102, 116, 367, 410
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	4, 110, 437
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 227, 236, 351, 434
HpyF3I	CTNAG	1 cut(s)	457
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	311
LpnPI	CCDG	5 cut(s)	51, 279, 368, 395, 432
Lsp1109I	GCAGC	2 cut(s)	259, 449
LweI	GCATC	1 cut(s)	97
MabI	ACCWGGT	1 cut(s)	381
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	235
MalI	GATC	1 cut(s)	313
MboI	GATC	1 cut(s)	311
MflI	RGATCY	1 cut(s)	311
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	2 cut(s)	339, 444
MseI	TTAA	1 cut(s)	387
MspA1I	CMGCKG	2 cut(s)	150, 402
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	2 cut(s)	190, 371
MwoI	GCNNNNNNNGC	5 cut(s)	88, 227, 236, 351, 434
NdeII	GATC	1 cut(s)	311
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	220, 264
NspV	TTCGAA	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	194
PagI	TCATGA	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	2 cut(s)	276, 375
PfeI	GAWTC	4 cut(s)	247, 413, 443, 469
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	5 cut(s)	40, 81, 152, 274, 439
PleI	GAGTC	1 cut(s)	472
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	472
Ppu21I	YACGTR	1 cut(s)	236
PpuMI	RGGWCCY	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	381
PspCI	CACGTG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	220, 264
PspPI	GGNCC	2 cut(s)	152, 262
PspPPI	RGGWCCY	1 cut(s)	262
PspXI	VCTCGAGB	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	311
PsyI	GACNNNGTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	5 cut(s)	39, 80, 151, 273, 438
Sau3AI	GATC	1 cut(s)	311
Sau96I	GGNCC	2 cut(s)	152, 262
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	383
SetI	ASST	8 cut(s)	9, 128, 171, 238, 264, 336, 384, 430
SexAI	ACCWGGT	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	2 cut(s)	397, 435
Sfr274I	CTCGAG	1 cut(s)	194
SfuI	TTCGAA	1 cut(s)	94
SinI	GGWCC	1 cut(s)	262
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	194, 257
SmoI	CTYRAG	2 cut(s)	194, 257
SsiI	CCGC	8 cut(s)	24, 39, 79, 82, 138, 150, 155, 402
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	4 cut(s)	102, 116, 367, 410
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	7 cut(s)	94, 165, 195, 245, 321, 348, 467
TauI	GCSGC	3 cut(s)	41, 82, 153
TfiI	GAWTC	4 cut(s)	247, 413, 443, 469
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	2 cut(s)	272, 437
TspRI	CASTG	1 cut(s)	107
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.