Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014417.1

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Forward (+)

1225 .. 1590

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014417.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggagtaccagacttcatctgtggctctttcgcagaagctctcctccggccactccatatacgacggcgttttcacctctgctccctctaagttcactgtatcgtctttctcttcccggctcgaagactactgcgagattttcggcggctcaggcgccgcctcctcgattccggttctggaagttccggagccgaatgagcgaaaagcttcggtggatgttcggagctcgaagcttgattactccaatgtcttcggtggctttggcgattccgaattcgcagtgccgtatgaggagctctttactgagccgaagaaaaggactaaattgcacaaagaaagcaggtacattatatttctgaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.39

Weight (kDa)

5.37

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	155
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	2 cut(s)	147, 159
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	8, 347
AluBI	AGCT	5 cut(s)	40, 209, 228, 235, 298
AluI	AGCT	5 cut(s)	40, 209, 228, 235, 298
Alw21I	GWGCWC	2 cut(s)	230, 300
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	2 cut(s)	230, 300
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BbsI	GAAGAC	2 cut(s)	132, 244
Bbv12I	GWGCWC	2 cut(s)	230, 300
BceAI	ACGGC	2 cut(s)	82, 271
BcnI	CCSGG	1 cut(s)	118
BfoI	RGCGCY	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	333
BisI	GCNGC	2 cut(s)	148, 159
BlsI	GCNGC	2 cut(s)	149, 160
Bme1390I	CCNGG	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	157, 192
BmrFI	CCNGG	1 cut(s)	118
BpiI	GAAGAC	2 cut(s)	132, 244
Bpu10I	CCTNAGC	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	156
BsaWI	WCCGGW	2 cut(s)	172, 187
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
BseAI	TCCGGA	1 cut(s)	187
BseGI	GGATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	165, 297
BseRI	GAGGAG	3 cut(s)	34, 154, 308
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	230, 300
BsiSI	CCGG	4 cut(s)	48, 118, 173, 188
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	230, 300
Bsp13I	TCCGGA	1 cut(s)	187
BspACI	CCGC	2 cut(s)	147, 159
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	164, 298
BspEI	TCCGGA	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	157, 192
BspMI	ACCTGC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	155
BssNI	GRCGYC	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	156
BstDEI	CTNAG	3 cut(s)	90, 151, 306
BstF5I	GGATG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 199
BstSCI	CCNGG	1 cut(s)	116
BstV2I	GAAGAC	2 cut(s)	132, 244
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	96, 288
BveI	ACCTGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	7, 346
CviQI	GTAC	2 cut(s)	7, 346
DdeI	CTNAG	3 cut(s)	90, 151, 306
DinI	GGCGCC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Ecl136II	GAGCTC	2 cut(s)	228, 298
Eco24I	GRGCYC	2 cut(s)	230, 300
Eco53kI	GAGCTC	2 cut(s)	228, 298
EcoICRI	GAGCTC	2 cut(s)	228, 298
EcoRI	GAATTC	1 cut(s)	275
EcoT38I	GRGCYC	2 cut(s)	230, 300
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
FaiI	YATR	4 cut(s)	59, 61, 291, 353
Fnu4HI	GCNGC	2 cut(s)	148, 159
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	2 cut(s)	230, 300
Fsp4HI	GCNGC	2 cut(s)	148, 159
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	2 cut(s)	148, 159
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	4 cut(s)	48, 118, 173, 188
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HindIII	AAGCTT	2 cut(s)	207, 233
HinfI	GANTC	2 cut(s)	169, 269
HpaII	CCGG	4 cut(s)	48, 118, 173, 188
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	3 cut(s)	225, 274, 360
Hpy188III	TCNNGA	2 cut(s)	179, 188
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 199
HpyF3I	CTNAG	3 cut(s)	90, 151, 306
Hsp92I	GRCGYC	1 cut(s)	156
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
Kpn2I	TCCGGA	1 cut(s)	187
LmnI	GCTCC	4 cut(s)	88, 190, 225, 295
LpnPI	CCDG	8 cut(s)	23, 61, 131, 138, 164, 186, 201, 328
MboII	GAAGA	4 cut(s)	105, 137, 244, 325
MhlI	GDGCHC	2 cut(s)	230, 300
MluCI	AATT	2 cut(s)	275, 326
Mly113I	GGCGCC	1 cut(s)	156
MnlI	CCTC	6 cut(s)	55, 88, 97, 172, 175, 286
MroI	TCCGGA	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	208
MspI	CCGG	4 cut(s)	48, 118, 173, 188
MspR9I	CCNGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	153, 199
NarI	GGCGCC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	118
NlaIV	GGNNCC	2 cut(s)	157, 192
PdmI	GAANNNNTTC	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	169, 269
PkrI	GCNGC	2 cut(s)	149, 160
PluTI	GGCGCC	1 cut(s)	159
Psp124BI	GAGCTC	2 cut(s)	230, 300
PspN4I	GGNNCC	2 cut(s)	157, 192
RsaI	GTAC	2 cut(s)	8, 347
RsaNI	GTAC	2 cut(s)	7, 346
SacI	GAGCTC	2 cut(s)	230, 300
SatI	GCNGC	2 cut(s)	148, 159
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	230, 300
SetI	ASST	7 cut(s)	42, 80, 211, 230, 237, 300, 347
SfoI	GGCGCC	1 cut(s)	157
Sse9I	AATT	2 cut(s)	275, 326
SsiI	CCGC	2 cut(s)	147, 159
SspDI	GGCGCC	1 cut(s)	155
SstI	GAGCTC	2 cut(s)	230, 300
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	3 cut(s)	123, 167, 230
TasI	AATT	2 cut(s)	275, 326
TauI	GCSGC	2 cut(s)	150, 161
TfiI	GAWTC	2 cut(s)	169, 269
TscAI	CASTG	2 cut(s)	103, 288
TspDTI	ATGAA	1 cut(s)	6
TspRI	CASTG	2 cut(s)	103, 288
XapI	RAATTY	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.