Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Forward (+)

62838635 .. 62842122

Gene Structure 3488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG458500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTCTGGCTACCTTCCTGAAAAAACCATTCGTACAAGGATTAATGGAACATCAAAAGCTCTAGCCATATCACACTACCTTGTTCCTGAAGATACCATTCGTGAAATTAGTCAGATTCAGCACAGTGAGCAAGGCATAGAGCTCTATGATCGAACCAATTTCTCCTCCACTAGTACTGTAGGCTCTCCGAGAAAAACCAGAGTAGGGAGAGTAGTATGTGTCCGACAAAGCAGAAGCACCGGAGTTCCGGAGTCAATCACACCGGCAAATGCTCTAGATTCGGAGAGTCCACAACCTCCACCGCCAACTAGATTTCCGAGACAATCCAAGGCGGATCCTTACCCCACGTCGACCTCCACACTGGAACGAACGGCTGGGCTTGGCGGAGAGCTTGGTGGTTGGCGGTTCCACCTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.25

Weight (kDa)

9.57

Isoelectric Point (pI)

64.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	350
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	4 cut(s)	302, 332, 384, 403
AclWI	GGATC	2 cut(s)	329, 342
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	34, 175
AfiI	CCNNNNNNNGG	1 cut(s)	204
AhlI	ACTAGT	1 cut(s)	170
AjiI	CACGTC	1 cut(s)	348
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	3 cut(s)	59, 142, 391
AluI	AGCT	3 cut(s)	59, 142, 391
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	329, 342
Aor13HI	TCCGGA	1 cut(s)	247
AseI	ATTAAT	1 cut(s)	42
BamHI	GGATCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	144
BceAI	ACGGC	1 cut(s)	387
BciT130I	CCWGG	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	313
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	4 cut(s)	62, 171, 275, 309
BfmI	CTRYAG	1 cut(s)	177
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	348
BmiI	GGNNCC	2 cut(s)	336, 407
BmrFI	CCNGG	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	2 cut(s)	239, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	154
BseYI	CCCAGC	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	240, 248, 263
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	148, 334
BspACI	CCGC	4 cut(s)	302, 332, 384, 403
BspEI	TCCGGA	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	336, 407
BspPI	GGATC	2 cut(s)	329, 342
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	2 cut(s)	148, 334
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	2 cut(s)	125, 178
BstKTI	GATC	2 cut(s)	151, 337
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	2 cut(s)	148, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	411
BstSFI	CTRYAG	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BtrI	CACGTC	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	130, 359
Cfr10I	RCCGGY	1 cut(s)	262
CsiI	ACCWGGT	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	33, 174
CviJI	RGCY	8 cut(s)	9, 59, 65, 142, 183, 374, 379, 391
CviKI_1	RGCY	8 cut(s)	9, 59, 65, 142, 183, 374, 379, 391
CviQI	GTAC	2 cut(s)	33, 174
DpnI	GATC	2 cut(s)	150, 336
DpnII	GATC	2 cut(s)	148, 334
EciI	GGCGGA	2 cut(s)	347, 399
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	327
FaiI	YATR	4 cut(s)	68, 137, 147, 217
FblI	GTMKAC	1 cut(s)	350
FriOI	GRGCYC	1 cut(s)	144
FspBI	CTAG	4 cut(s)	62, 171, 275, 309
GsaI	CCCAGC	1 cut(s)	378
HapII	CCGG	3 cut(s)	240, 248, 263
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HinfI	GANTC	4 cut(s)	115, 251, 278, 286
HpaII	CCGG	3 cut(s)	240, 248, 263
Hpy166II	GTNNAC	2 cut(s)	290, 351
Hpy188I	TCNGA	6 cut(s)	114, 189, 224, 283, 318, 419
Hpy188III	TCNNGA	5 cut(s)	17, 86, 101, 248, 275
Hpy8I	GTNNAC	2 cut(s)	290, 351
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	2 cut(s)	125, 178
HpyCH4IV	ACGT	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpySE526I	ACGT	1 cut(s)	347
Kpn2I	TCCGGA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	148, 334
LpnPI	CCDG	9 cut(s)	30, 99, 211, 253, 261, 276, 347, 360, 398
MabI	ACCWGGT	1 cut(s)	411
MaeI	CTAG	4 cut(s)	62, 171, 275, 309
MaeII	ACGT	1 cut(s)	347
MalI	GATC	2 cut(s)	150, 336
MboI	GATC	2 cut(s)	148, 334
MboII	GAAGA	1 cut(s)	101
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	2 cut(s)	105, 157
MlyI	GAGTC	2 cut(s)	260, 295
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	3 cut(s)	175, 306, 364
MroI	TCCGGA	1 cut(s)	247
MseI	TTAA	1 cut(s)	42
MspI	CCGG	3 cut(s)	240, 248, 263
MspR9I	CCNGG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	2 cut(s)	148, 334
NlaIV	GGNNCC	2 cut(s)	336, 407
PfeI	GAWTC	2 cut(s)	115, 278
PleI	GAGTC	2 cut(s)	259, 294
PpsI	GAGTC	2 cut(s)	259, 294
PshBI	ATTAAT	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	336, 407
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	2 cut(s)	34, 175
RsaNI	GTAC	2 cut(s)	33, 174
SacI	GAGCTC	1 cut(s)	144
SalI	GTCGAC	1 cut(s)	349
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	148, 334
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	2 cut(s)	260, 295
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	9 cut(s)	15, 61, 81, 144, 298, 350, 356, 393, 414
SexAI	ACCWGGT	1 cut(s)	411
SfcI	CTRYAG	1 cut(s)	177
SpeI	ACTAGT	1 cut(s)	170
Sse9I	AATT	2 cut(s)	105, 157
SsiI	CCGC	4 cut(s)	302, 332, 384, 403
SspMI	CTAG	4 cut(s)	62, 171, 275, 309
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	125, 178
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	151, 350
TasI	AATT	2 cut(s)	105, 157
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	115, 278
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	130, 366
TspRI	CASTG	2 cut(s)	130, 366
VspI	ATTAAT	1 cut(s)	42
XbaI	TCTAGA	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	350
XspI	CTAG	4 cut(s)	62, 171, 275, 309
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.