Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Forward (+)

41314657 .. 41314992

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG321700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAGCTTGGGAAAGTGCAGAGTTTATGACGGGCCACCCAAGTTCGCACTCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCTCCCCGCGCCTCGAGGACTACGACGAGATTTTCGGCGCCTTCCACTTCTCACGCGCCTCCTCGATTCCCAGGCTCGAGGTCTCGGTCACCGCCACCGCCGACGACGACAATGAGGAGTTCTTCAATGTGCGTAGCTCCGACTTCGACTACTCCGAGGTCTTTGGAGGCTTCGACGGCTTGGATTTGGCAGTCGCGTACGACGACCTGGTCAAGCAACCCTTTGGCAGAGACGGTGATTCCTCCGACGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.1

Weight (kDa)

4.11

Isoelectric Point (pI)

62.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AbsI	CCTCGAGG	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	116
AccII	CGCG	3 cut(s)	88, 135, 275
AciI	CCGC	3 cut(s)	86, 171, 177
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	149, 285
AluBI	AGCT	3 cut(s)	6, 216, 332
AluI	AGCT	3 cut(s)	6, 216, 332
Alw26I	GTCTC	2 cut(s)	166, 303
Ama87I	CYCGRG	2 cut(s)	92, 155
AoxI	GGCC	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspLEI	GCGC	3 cut(s)	90, 119, 137
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	160, 326
AvaI	CYCGRG	2 cut(s)	92, 155
BanI	GGYRCC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	2 cut(s)	151, 287
BcoDI	GTCTC	2 cut(s)	166, 303
BfoI	RGCGCY	1 cut(s)	120
Bme1390I	CCNGG	2 cut(s)	151, 287
BmeT110I	CYCGRG	2 cut(s)	92, 155
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	2 cut(s)	151, 287
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	149, 234
BseBI	CCWGG	2 cut(s)	151, 287
BseDI	CCNNGG	2 cut(s)	149, 234
BsgI	GTGCAG	1 cut(s)	37
Bsh1236I	CGCG	3 cut(s)	88, 135, 275
BshFI	GGCC	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	116
BsiHKCI	CYCGRG	2 cut(s)	92, 155
BsiWI	CGTACG	1 cut(s)	276
BsmAI	GTCTC	2 cut(s)	166, 303
BsmBI	CGTCTC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	34
Bso31I	GGTCTC	1 cut(s)	166
BsoBI	CYCGRG	2 cut(s)	92, 155
BspACI	CCGC	3 cut(s)	86, 171, 177
BspANI	GGCC	1 cut(s)	34
BspFNI	CGCG	3 cut(s)	88, 135, 275
BspLI	GGNNCC	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	149, 234
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	151, 287
Bst4CI	ACNGT	1 cut(s)	314
BstACI	GRCGYC	1 cut(s)	117
BstEII	GGTNACC	1 cut(s)	166
BstFNI	CGCG	3 cut(s)	88, 135, 275
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	3 cut(s)	90, 119, 137
BstMAI	GTCTC	2 cut(s)	166, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNI	CCWGG	2 cut(s)	151, 287
BstPI	GGTNACC	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	149, 285
BstUI	CGCG	3 cut(s)	88, 135, 275
BsuRI	GGCC	1 cut(s)	34
CfoI	GCGC	3 cut(s)	90, 119, 137
Cfr13I	GGNCC	1 cut(s)	32
CsiI	ACCWGGT	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	277
CviJI	RGCY	7 cut(s)	6, 34, 154, 216, 249, 258, 332
CviKI_1	RGCY	7 cut(s)	6, 34, 154, 216, 249, 258, 332
CviQI	GTAC	1 cut(s)	277
DinI	GGCGCC	1 cut(s)	118
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	166
Eco88I	CYCGRG	2 cut(s)	92, 155
Eco91I	GGTNACC	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	149, 285
EgeI	GGCGCC	1 cut(s)	118
EheI	GGCGCC	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	303
FaiI	YATR	1 cut(s)	27
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FauI	CCCGC	1 cut(s)	93
GlaI	GCGC	3 cut(s)	89, 118, 136
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	34
HhaI	GCGC	3 cut(s)	90, 119, 137
Hin1I	GRCGYC	1 cut(s)	117
Hin6I	GCGC	3 cut(s)	88, 117, 135
HinP1I	GCGC	3 cut(s)	88, 117, 135
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	2 cut(s)	145, 317
HphI	GGTGA	2 cut(s)	160, 326
Hpy188I	TCNGA	3 cut(s)	220, 235, 325
Hpy99I	CGWCG	6 cut(s)	107, 185, 188, 257, 284, 329
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	117
HspAI	GCGC	3 cut(s)	88, 117, 135
KasI	GGCGCC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	4 cut(s)	136, 163, 272, 299
MabI	ACCWGGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	193
Mly113I	GGCGCC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	151, 287
MvaI	CCWGG	2 cut(s)	151, 287
MvnI	CGCG	3 cut(s)	88, 135, 275
MwoI	GCNNNNNNNGC	1 cut(s)	255
NarI	GGCGCC	1 cut(s)	117
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	166
PaeR7I	CTCGAG	2 cut(s)	92, 155
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 231, 279
PfeI	GAWTC	2 cut(s)	145, 317
Pfl23II	CGTACG	1 cut(s)	276
PflFI	GACNNNGTC	1 cut(s)	287
PluTI	GGCGCC	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	149, 285
PspEI	GGTNACC	1 cut(s)	166
PspGI	CCWGG	2 cut(s)	149, 285
PspLI	CGTACG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	32
PspXI	VCTCGAGB	2 cut(s)	92, 155
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	151, 287
SetI	ASST	6 cut(s)	8, 162, 218, 240, 288, 334
SexAI	ACCWGGT	1 cut(s)	285
SfoI	GGCGCC	1 cut(s)	118
Sfr274I	CTCGAG	2 cut(s)	92, 155
SlaI	CTCGAG	2 cut(s)	92, 155
SmlI	CTYRAG	2 cut(s)	92, 155
SmoI	CTYRAG	2 cut(s)	92, 155
SsiI	CCGC	3 cut(s)	86, 171, 177
SspDI	GGCGCC	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	149, 285
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	5 cut(s)	93, 143, 156, 225, 252
TaqII	GACCGA	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	145, 317
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
Tth111I	GACNNNGTC	1 cut(s)	287
XhoI	CTCGAG	2 cut(s)	92, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.