Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001643.1

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Reverse (-)

135598 .. 135924

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001643.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgaccttgggaaagtacagagtttgtgacgggccgcccaagtttagcctctcctcctcctcctccctctccccgcgccacgaggactacgacaagattttcggggccttccacgcctcactcgcctcctcgattcccatgctcgaggtctcggttgccgccgccgccgccgacgacgacaatgaggagttcttcaatgtgcgtagctccggcttcgactactttgaggtctttggaggctttgacggcttggatttggcagtcgcgtacgacgacctggtcaagcaaccctttggcagagacagtgattcctccgacgaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.71

Weight (kDa)

4.18

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AccII	CGCG	2 cut(s)	76, 266
AciI	CCGC	6 cut(s)	35, 74, 159, 162, 165, 168
AfaI	GTAC	2 cut(s)	17, 269
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	2 cut(s)	207, 323
AluI	AGCT	2 cut(s)	207, 323
Alw26I	GTCTC	2 cut(s)	154, 294
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	2 cut(s)	32, 105
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	32, 105
AvaI	CYCGRG	1 cut(s)	143
BauI	CACGAG	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	154, 294
BisI	GCNGC	5 cut(s)	35, 159, 162, 165, 168
BlsI	GCNGC	5 cut(s)	36, 160, 163, 166, 169
Bme1390I	CCNGG	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	32, 105
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	6
BseRI	GAGGAG	6 cut(s)	43, 46, 49, 52, 118, 200
Bsh1236I	CGCG	2 cut(s)	76, 266
BshFI	GGCC	2 cut(s)	34, 107
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	210
BsiWI	CGTACG	1 cut(s)	267
BsmAI	GTCTC	2 cut(s)	154, 294
BsnI	GGCC	2 cut(s)	34, 107
Bso31I	GGTCTC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	143
BspACI	CCGC	6 cut(s)	35, 74, 159, 162, 165, 168
BspANI	GGCC	2 cut(s)	34, 107
BspFNI	CGCG	2 cut(s)	76, 266
BspLI	GGNNCC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	6
BssSI	CACGAG	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	305
BstFNI	CGCG	2 cut(s)	76, 266
BstHHI	GCGC	1 cut(s)	78
BstMAI	GTCTC	2 cut(s)	154, 294
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 122, 164, 167, 246
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstUI	CGCG	2 cut(s)	76, 266
BsuRI	GGCC	2 cut(s)	34, 107
BtsIMutI	CAGTG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	32, 105
CsiI	ACCWGGT	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	16, 268
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	8 cut(s)	34, 48, 107, 207, 213, 240, 249, 323
CviKI_1	RGCY	8 cut(s)	34, 48, 107, 207, 213, 240, 249, 323
CviQI	GTAC	2 cut(s)	16, 268
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	6
Eco31I	GGTCTC	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	142
FaiI	YATR	1 cut(s)	140
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	1 cut(s)	138
FauI	CCCGC	1 cut(s)	81
Fnu4HI	GCNGC	5 cut(s)	35, 159, 162, 165, 168
Fsp4HI	GCNGC	5 cut(s)	35, 159, 162, 165, 168
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	5 cut(s)	35, 159, 162, 165, 168
HaeIII	GGCC	2 cut(s)	34, 107
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	2 cut(s)	133, 308
HpaII	CCGG	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	316
Hpy99I	CGWCG	4 cut(s)	176, 179, 275, 320
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 122, 164, 167, 246
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	3 cut(s)	223, 263, 290
MabI	ACCWGGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	26
MboII	GAAGA	1 cut(s)	184
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	76, 266
MwoI	GCNNNNNNNGC	5 cut(s)	113, 122, 164, 167, 246
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 270
PfeI	GAWTC	2 cut(s)	133, 308
Pfl23II	CGTACG	1 cut(s)	267
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	5 cut(s)	36, 160, 163, 166, 169
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspLI	CGTACG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	2 cut(s)	32, 105
PspXI	VCTCGAGB	1 cut(s)	143
PsyI	GACNNNGTC	1 cut(s)	278
RsaI	GTAC	2 cut(s)	17, 269
RsaNI	GTAC	2 cut(s)	16, 268
SatI	GCNGC	5 cut(s)	35, 159, 162, 165, 168
Sau96I	GGNCC	2 cut(s)	32, 105
ScrFI	CCNGG	1 cut(s)	278
SetI	ASST	6 cut(s)	8, 150, 209, 231, 279, 325
SexAI	ACCWGGT	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SsiI	CCGC	6 cut(s)	35, 74, 159, 162, 165, 168
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	3 cut(s)	131, 144, 216
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	5 cut(s)	37, 161, 164, 167, 170
TfiI	GAWTC	2 cut(s)	133, 308
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	26
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	278
XhoI	CTCGAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.