RLG00000033736

Auxilin-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002396
Physical Location & Seq
Forward (+)
31597082 .. 31600899
3818 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033736

Sequence Viewer

Length: 345 bp
ATGCCACCGCCGACGCTGTCATCCGCCAACAAAGGATCCGCTACCGAATCCCAAACCCAAGTTCGGCCTCTCCTCCTCCTTCTCCCTCTCCTTGCTCCTCGAGGACTACAGCAAGATTTCGGTGCCTTCCATGCCTCACCCGCCTCCTTGATTCATGTGCTCGAAGTCCCCATCCCCGTTATCGCCGCCGCTGCCGATAATGATAATGAGGAGTTCTTCGATGTGTGCAGCTCTGGCTTCGACTACTCCGAGGTCTTCGGAGGCTTCAACGACCTGAATTTCGCCATCGCATACGATGACCTAGTCAAGCAACCCTACGACGGCGACGGTGGTTCCTCCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.1

Weight (kDa)

4.05

Isoelectric Point (pI)

60.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 122
AciI CCGC 6 cut(s) 8, 24, 39, 141, 186, 189
AclWI GGATC 2 cut(s) 30, 43
AcsI RAATTY 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 63, 320
AgsI TTSAA 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw21I GWGCWC 1 cut(s) 162
AlwI GGATC 2 cut(s) 30, 43
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 191, 228
ApoI RAATTY 1 cut(s) 277
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AsuHPI GGTGA 1 cut(s) 129
AvaI CYCGRG 1 cut(s) 99
BamHI GGATCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 178, 240
BccI CCATC 2 cut(s) 179, 293
BceAI ACGGC 1 cut(s) 337
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 107
BisI GCNGC 4 cut(s) 186, 189, 192, 229
BlsI GCNGC 4 cut(s) 187, 190, 193, 230
BmeT110I CYCGRG 1 cut(s) 99
BmiI GGNNCC 3 cut(s) 37, 124, 334
BpiI GAAGAC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 320
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 20, 171
BseLI CCNNNNNNNGG 2 cut(s) 63, 320
BseRI GAGGAG 4 cut(s) 62, 65, 87, 224
BseXI GCAGC 2 cut(s) 178, 240
BsgI GTGCAG 1 cut(s) 247
BshFI GGCC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 63, 320
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 35
BspACI CCGC 6 cut(s) 8, 24, 39, 141, 186, 189
BspANI GGCC 1 cut(s) 67
BspLI GGNNCC 3 cut(s) 37, 124, 334
BspPI GGATC 2 cut(s) 30, 43
BspT107I GGYRCC 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 329
BstF5I GGATG 2 cut(s) 20, 171
BstKTI GATC 1 cut(s) 38
BstMBI GATC 1 cut(s) 35
BstMWI GCNNNNNNNGC 4 cut(s) 131, 140, 191, 234
BstSFI CTRYAG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 178, 240
BstV2I GAAGAC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 2 cut(s) 20, 171
CseI GACGC 1 cut(s) 22
CviAII CATG 2 cut(s) 131, 155
CviJI RGCY 4 cut(s) 67, 231, 237, 264
CviKI_1 RGCY 4 cut(s) 67, 231, 237, 264
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
EciI GGCGGA 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 99
FaeI CATG 2 cut(s) 134, 158
FaiI YATR 3 cut(s) 132, 156, 292
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 130, 154
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 186, 189, 192, 229
FokI GGATG 2 cut(s) 7, 158
Fsp4HI GCNGC 4 cut(s) 186, 189, 192, 229
FspBI CTAG 1 cut(s) 302
GluI GCNGC 4 cut(s) 186, 189, 192, 229
HaeIII GGCC 1 cut(s) 67
HgaI GACGC 1 cut(s) 22
Hin1II CATG 2 cut(s) 134, 158
HinfI GANTC 2 cut(s) 47, 151
HphI GGTGA 1 cut(s) 129
Hpy188I TCNGA 3 cut(s) 250, 260, 340
Hpy99I CGWCG 3 cut(s) 16, 323, 329
HpyAV CCTTC 2 cut(s) 89, 136
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 140, 191, 234
Hsp92II CATG 2 cut(s) 134, 158
Kzo9I GATC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 219, 287
Lsp1109I GCAGC 2 cut(s) 178, 240
MaeI CTAG 1 cut(s) 302
MalI GATC 1 cut(s) 37
MboI GATC 1 cut(s) 35
MboII GAAGA 2 cut(s) 208, 247
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 1 cut(s) 277
MspA1I CMGCKG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 131, 140, 191, 234
NdeII GATC 1 cut(s) 35
NlaIII CATG 2 cut(s) 134, 158
NlaIV GGNNCC 3 cut(s) 37, 124, 334
PaeR7I CTCGAG 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PfeI GAWTC 2 cut(s) 47, 151
PflFI GACNNNGTC 2 cut(s) 16, 302
PkrI GCNGC 4 cut(s) 187, 190, 193, 230
PspN4I GGNNCC 3 cut(s) 37, 124, 334
PspXI VCTCGAGB 1 cut(s) 99
PsuI RGATCY 1 cut(s) 35
PsyI GACNNNGTC 2 cut(s) 16, 302
SatI GCNGC 4 cut(s) 186, 189, 192, 229
Sau3AI GATC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 162
SetI ASST 4 cut(s) 233, 255, 276, 303
SfcI CTRYAG 1 cut(s) 107
Sfr274I CTCGAG 1 cut(s) 99
SlaI CTCGAG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 1 cut(s) 277
SsiI CCGC 6 cut(s) 8, 24, 39, 141, 186, 189
SspMI CTAG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 329
TaqI TCGA 4 cut(s) 100, 162, 219, 240
TasI AATT 1 cut(s) 277
TauI GCSGC 2 cut(s) 188, 191
TfiI GAWTC 2 cut(s) 47, 151
TseI GCWGC 2 cut(s) 191, 228
TspDTI ATGAA 1 cut(s) 143
Tth111I GACNNNGTC 2 cut(s) 16, 302
XapI RAATTY 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 99
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.