Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Reverse (-)

39776268 .. 39790308

Gene Structure 14041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG221000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCTCCGATCTGTTAGCACAATTCTGTTCACCATTCTCCAACTGTTATGGCAGGTGGTGTTTATGATATGGCACATATATTGTGAATGCGCGAACATCAGAACTGATGAGTGGGAAACTGAAATTGAAGCCGAGGAAGACAATGATGGCGGGTGGTGCCTCAACCAAGAGCCTGATAAAGATGAAGACAAAGAAGAAAACGATTCTCCGCTGGAGGGGAACAGGCTTCGTGCCTCCTCAATTCCCGTGCTCGAGGTCCCTGTCGCCGTCGACAACGACAATGAGGAGTTCTTCAATGTGCACGACTCCGACTTCAACTACTCCGAGGTCTTTGGATGCTTCAACTGCCTAGATTCCGCCGTCGAGTACGACAACCTTGTCAAGCAACCCTACGGCGGAGACGGTGGTTCCTCTGACAAAGCTTGGACTCTCAGCAGAATCTGTGTCTCTCTCAGGAGAGTCAAATCATTATGTGAAGAACAAAAGCTTTACAGATGGAGATCCTTACTATTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.96

Weight (kDa)

4.28

Isoelectric Point (pI)

70.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	92
AciI	CCGC	4 cut(s)	150, 209, 357, 396
AclWI	GGATC	1 cut(s)	495
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	2 cut(s)	215, 395
AgsI	TTSAA	4 cut(s)	128, 295, 316, 343
AluBI	AGCT	2 cut(s)	422, 487
AluI	AGCT	2 cut(s)	422, 487
Alw21I	GWGCWC	2 cut(s)	252, 303
Alw26I	GTCTC	2 cut(s)	393, 451
Alw44I	GTGCAC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	495
AlwNI	CAGNNNCTG	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	251
ApaLI	GTGCAC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	156
BbsI	GAAGAC	2 cut(s)	144, 192
Bbv12I	GWGCWC	2 cut(s)	252, 303
BccI	CCATC	2 cut(s)	140, 489
BceAI	ACGGC	3 cut(s)	251, 344, 409
BcoDI	GTCTC	2 cut(s)	393, 451
BfaI	CTAG	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	3 cut(s)	158, 258, 409
BmsI	GCATC	1 cut(s)	326
BpiI	GAAGAC	2 cut(s)	144, 192
BpmI	CTGGAG	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	499
BsaJI	CCNNGG	2 cut(s)	132, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 395
Bse8I	GATNNNNATC	1 cut(s)	499
BseDI	CCNNGG	2 cut(s)	132, 324
BseGI	GGATG	1 cut(s)	341
BseJI	GATNNNNATC	1 cut(s)	499
BseLI	CCNNNNNNNGG	2 cut(s)	215, 395
BseMII	CTCAG	2 cut(s)	445, 466
BseRI	GAGGAG	2 cut(s)	226, 299
BseSI	GKGCMC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	252, 303
BsiHKCI	CYCGRG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	215, 395
BsmAI	GTCTC	2 cut(s)	393, 451
BsmBI	CGTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	252, 303
Bsp143I	GATC	2 cut(s)	8, 500
BspACI	CCGC	4 cut(s)	150, 209, 357, 396
BspCNI	CTCAG	2 cut(s)	444, 465
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	3 cut(s)	158, 258, 409
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	132, 324
BssMI	GATC	2 cut(s)	8, 500
Bst4CI	ACNGT	2 cut(s)	45, 404
BstDEI	CTNAG	2 cut(s)	431, 452
BstF5I	GGATG	1 cut(s)	341
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	11, 503
BstMAI	GTCTC	2 cut(s)	393, 451
BstMBI	GATC	2 cut(s)	8, 500
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 345
BstSLI	GKGCMC	1 cut(s)	303
BstUI	CGCG	1 cut(s)	92
BstV2I	GAAGAC	2 cut(s)	144, 192
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BtsCI	GGATG	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	441
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	367
CviJI	RGCY	5 cut(s)	131, 172, 226, 422, 487
CviKI_1	RGCY	5 cut(s)	131, 172, 226, 422, 487
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	2 cut(s)	431, 452
DpnI	GATC	2 cut(s)	10, 502
DpnII	GATC	2 cut(s)	8, 500
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EciI	GGCGGA	2 cut(s)	346, 411
Eco47I	GGWCC	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	393
FaiI	YATR	6 cut(s)	49, 65, 70, 77, 79, 472
FaqI	GGGAC	1 cut(s)	242
FauI	CCCGC	1 cut(s)	143
FblI	GTMKAC	1 cut(s)	270
FokI	GGATG	1 cut(s)	348
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	233
HhaI	GCGC	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	2 cut(s)	420, 485
HinfI	GANTC	6 cut(s)	203, 305, 353, 427, 438, 459
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	30, 271, 301
Hpy188I	TCNGA	5 cut(s)	8, 101, 310, 325, 415
Hpy188III	TCNNGA	1 cut(s)	454
Hpy8I	GTNNAC	3 cut(s)	30, 271, 301
Hpy99I	CGWCG	2 cut(s)	272, 365
HpyCH4III	ACNGT	2 cut(s)	45, 404
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 345
HpyF3I	CTNAG	2 cut(s)	431, 452
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	8, 500
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	6 cut(s)	38, 186, 197, 208, 273, 439
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	1 cut(s)	350
MalI	GATC	2 cut(s)	10, 502
MboI	GATC	2 cut(s)	8, 500
MboII	GAAGA	5 cut(s)	149, 197, 206, 283, 488
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	2 cut(s)	252, 303
MluCI	AATT	3 cut(s)	21, 123, 240
MlyI	GAGTC	3 cut(s)	299, 421, 468
MmeI	TCCRAC	2 cut(s)	64, 333
MnlI	CCTC	9 cut(s)	127, 170, 208, 244, 247, 247, 277, 319, 421
MspA1I	CMGCKG	1 cut(s)	211
Mva1269I	GAATGC	1 cut(s)	92
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	156, 345
NdeII	GATC	2 cut(s)	8, 500
NlaIV	GGNNCC	3 cut(s)	158, 258, 409
NmeAIII	GCCGAG	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	251
PaqCI	CACCTGC	1 cut(s)	43
PctI	GAATGC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	203, 353, 438
PleI	GAGTC	3 cut(s)	299, 421, 467
PpsI	GAGTC	3 cut(s)	299, 421, 467
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	158, 258, 409
PspPI	GGNCC	1 cut(s)	256
PspPPI	RGGWCCY	1 cut(s)	256
PspXI	VCTCGAGB	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	441
PsuI	RGATCY	1 cut(s)	500
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SalI	GTCGAC	1 cut(s)	269
Sau3AI	GATC	2 cut(s)	8, 500
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	3 cut(s)	299, 421, 468
SduI	GDGCHC	2 cut(s)	252, 303
SetI	ASST	6 cut(s)	57, 258, 330, 378, 424, 489
SfaNI	GCATC	1 cut(s)	326
Sfr274I	CTCGAG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	256
SlaI	CTCGAG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	21, 123, 240
SsiI	CCGC	4 cut(s)	150, 209, 357, 396
SspMI	CTAG	1 cut(s)	350
TaaI	ACNGT	2 cut(s)	45, 404
TaqI	TCGA	3 cut(s)	252, 270, 363
TasI	AATT	3 cut(s)	21, 123, 240
TfiI	GAWTC	3 cut(s)	203, 353, 438
TspDTI	ATGAA	2 cut(s)	198, 502
VneI	GTGCAC	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	256
XhoI	CTCGAG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.