Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Reverse (-)

4772194 .. 4777326

Gene Structure 5133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTGGTCATGCTTGCTTCAATAACAAACCAACTGGGGACTACTGCTTTTCTCTTGTTCCTCGGCGGCGGCGATGGGGTGATGTTTGGCTACTTTCCTGAAAAAACCATTCGTACAAGGATTAATGAAACATCAAAAGCTCTAGCCATATCACACTACCTTGTTCCTGAAGATATCATTCGTGAAATTAGTCAGATTCAGCACAGTGAGCAAGGCATAGAGCTCTATGATCGAGGGAACGGAGCTTCGCGCCTCCTCGATTCCCTTGCTCGAGGTCCCGTCGCCGCCGCCGACGACGACAATGAGGAGTTCTTCGATGTGCGTGGCTCGGCTTCGACTACTCGAGAGGTCTTTGGAGGCTTCAACGGCACGGATTTCGCGGTCGCGTACGACAACCTAGTCAAACAACCTTACGGCGGAGACTATGGTTCCTCCGACGAAGCTTGGACTCTCGGCGGAATGCGGGTCTCTCTCAATAGAGTTGAATCATTCAGCGAAGAACCACGGCTTTACGGATGGAGATCCTTACTATTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.72

Weight (kDa)

4.6

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
AccII	CGCG	3 cut(s)	250, 380, 386
AciI	CCGC	8 cut(s)	66, 69, 285, 288, 380, 417, 456, 463
AclWI	GGATC	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	2 cut(s)	115, 389
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	21, 364, 485
AluBI	AGCT	4 cut(s)	140, 223, 245, 443
AluI	AGCT	4 cut(s)	140, 223, 245, 443
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	414, 472
AlwI	GGATC	1 cut(s)	516
Ama87I	CYCGRG	2 cut(s)	270, 342
AseI	ATTAAT	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	2 cut(s)	270, 342
AvaII	GGWCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	225
BccI	CCATC	2 cut(s)	68, 510
BceAI	ACGGC	3 cut(s)	382, 430, 521
BcgI	CGANNNNNNTGC	4 cut(s)	248, 282, 358, 392
BcoDI	GTCTC	2 cut(s)	414, 472
BfaI	CTAG	2 cut(s)	143, 398
BisI	GCNGC	4 cut(s)	67, 70, 285, 288
BlsI	GCNGC	4 cut(s)	68, 71, 286, 289
Bme18I	GGWCC	1 cut(s)	275
BmeT110I	CYCGRG	2 cut(s)	270, 342
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	2 cut(s)	277, 430
BmrI	ACTGGG	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	520
BsaI	GGTCTC	1 cut(s)	472
BsaJI	CCNNGG	2 cut(s)	61, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	520
BseDI	CCNNGG	2 cut(s)	61, 503
BseGI	GGATG	1 cut(s)	521
BseJI	GATNNNNATC	1 cut(s)	520
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	2 cut(s)	245, 320
Bsh1236I	CGCG	3 cut(s)	250, 380, 386
Bsh1285I	CGRYCG	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	225
BsiHKCI	CYCGRG	2 cut(s)	270, 342
BsiWI	CGTACG	1 cut(s)	387
BslFI	GGGAC	2 cut(s)	52, 261
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	2 cut(s)	414, 472
BsmFI	GGGAC	2 cut(s)	52, 261
BsmI	GAATGC	1 cut(s)	465
Bso31I	GGTCTC	1 cut(s)	472
BsoBI	CYCGRG	2 cut(s)	270, 342
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	229, 521
BspACI	CCGC	8 cut(s)	66, 69, 285, 288, 380, 417, 456, 463
BspFNI	CGCG	3 cut(s)	250, 380, 386
BspLI	GGNNCC	2 cut(s)	277, 430
BspPI	GGATC	1 cut(s)	516
BspTNI	GGTCTC	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	61, 503
BssMI	GATC	2 cut(s)	229, 521
Bst4CI	ACNGT	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	1 cut(s)	521
BstFNI	CGCG	3 cut(s)	250, 380, 386
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	2 cut(s)	232, 524
BstMAI	GTCTC	2 cut(s)	414, 472
BstMBI	GATC	2 cut(s)	229, 521
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 366
BstUI	CGCG	3 cut(s)	250, 380, 386
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BtgI	CCRYGG	1 cut(s)	503
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	521
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	15
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	114, 388
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	2 cut(s)	114, 388
DpnI	GATC	2 cut(s)	231, 523
DpnII	GATC	2 cut(s)	229, 521
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
EciI	GGCGGA	2 cut(s)	432, 471
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	472
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	2 cut(s)	270, 342
EcoICRI	GAGCTC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	1 cut(s)	13
FaiI	YATR	5 cut(s)	11, 149, 218, 228, 426
FaqI	GGGAC	2 cut(s)	52, 261
FatI	CATG	1 cut(s)	9
FauI	CCCGC	1 cut(s)	456
Fnu4HI	GCNGC	4 cut(s)	67, 70, 285, 288
FokI	GGATG	1 cut(s)	528
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	4 cut(s)	67, 70, 285, 288
FspBI	CTAG	2 cut(s)	143, 398
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	4 cut(s)	67, 70, 285, 288
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	4 cut(s)	196, 260, 448, 485
HphI	GGTGA	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	195, 436
Hpy188III	TCNNGA	4 cut(s)	98, 167, 182, 344
Hpy99I	CGWCG	4 cut(s)	284, 296, 299, 440
HpyCH4III	ACNGT	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 366
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	229, 521
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	3 cut(s)	20, 111, 180
MaeI	CTAG	2 cut(s)	143, 398
MalI	GATC	2 cut(s)	231, 523
MboI	GATC	2 cut(s)	229, 521
MboII	GAAGA	3 cut(s)	182, 304, 509
MflI	RGATCY	1 cut(s)	521
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	9 cut(s)	71, 227, 263, 266, 266, 298, 340, 350, 442
MseI	TTAA	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	465
MvnI	CGCG	3 cut(s)	250, 380, 386
MwoI	GCNNNNNNNGC	2 cut(s)	208, 366
NdeII	GATC	2 cut(s)	229, 521
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	277, 430
NmeAIII	GCCGAG	3 cut(s)	42, 308, 432
PaeR7I	CTCGAG	2 cut(s)	270, 342
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 288
PctI	GAATGC	1 cut(s)	465
PfeI	GAWTC	3 cut(s)	196, 260, 485
Pfl23II	CGTACG	1 cut(s)	387
PkrI	GCNGC	4 cut(s)	68, 71, 286, 289
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PpuMI	RGGWCCY	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	123
Psp124BI	GAGCTC	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	275
PspLI	CGTACG	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	277, 430
PspPI	GGNCC	1 cut(s)	275
PspPPI	RGGWCCY	1 cut(s)	275
PspXI	VCTCGAGB	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	521
RsaI	GTAC	2 cut(s)	115, 389
RsaNI	GTAC	2 cut(s)	114, 388
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	4 cut(s)	67, 70, 285, 288
Sau3AI	GATC	2 cut(s)	229, 521
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	1 cut(s)	442
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	9 cut(s)	142, 162, 225, 247, 277, 351, 399, 412, 445
Sfr274I	CTCGAG	2 cut(s)	270, 342
SinI	GGWCC	1 cut(s)	275
SlaI	CTCGAG	2 cut(s)	270, 342
SmlI	CTYRAG	2 cut(s)	270, 342
SmoI	CTYRAG	2 cut(s)	270, 342
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	8 cut(s)	66, 69, 285, 288, 380, 417, 456, 463
SspMI	CTAG	2 cut(s)	143, 398
SstI	GAGCTC	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	6 cut(s)	232, 258, 271, 315, 335, 343
TasI	AATT	1 cut(s)	186
TauI	GCSGC	4 cut(s)	69, 72, 287, 290
TfiI	GAWTC	3 cut(s)	196, 260, 485
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	141, 523
TspGWI	ACGGA	3 cut(s)	255, 386, 528
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	275
VspI	ATTAAT	1 cut(s)	123
XhoI	CTCGAG	2 cut(s)	270, 342
XspI	CTAG	2 cut(s)	143, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.