Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Reverse (-)

21905630 .. 21907108

Gene Structure 1479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1257600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGATAATTTATCACATTCTCGGCATCCAAACAGGTCTTCTTCCGCGAAAATGATGAACAATGGCGGCCTGTTAGCCAAGACGCTCTACGACGACGTTTACGGCGGTCCGCCGAAGTTCGGCCTCTCGTCCCTCTCGCCCCGCCTGGAGGACTACAGCGAGATTTTTGGGAGCTTCCACGCGTCACGCGCCTCGTCGATTCCGGTGCTGGATGTTCCCGCCGTCGACGAAAACGAGGTCTTCTTCGATGTGCGGAGCTCCGGCTTCGACTACAGCGAGGTCTTCGGCGGCTTTAACGGCCTGGATTTCGCCGTCGCGTACGACGACCTGGCTGATCAATCCCACGGCGGCGGCGGTGGCGATTCCTCCGACGAAGCCTGGACTCCTGCAGAATCTGGTTCTCTGTCAGAAGGGTCGGATGATTGCGGAAAGAACCAATGCTCAAATGGAGATCCTTACCAGTCATTTGATGGCAGTAAAGATTTCAGCATGGCATATCATACAGCTCATCAAACAAGCAGTAAAGATTCTTTGAACGGGATGGCATATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

19.63

Weight (kDa)

4.36

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	4 cut(s)	47, 182, 189, 317
AclWI	GGATC	1 cut(s)	446
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	119, 148
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	535
AjnI	CCWGG	4 cut(s)	144, 300, 327, 377
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	3 cut(s)	174, 258, 506
AluI	AGCT	3 cut(s)	174, 258, 506
Alw21I	GWGCWC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	3 cut(s)	67, 121, 298
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	260
BbsI	GAAGAC	3 cut(s)	30, 232, 274
Bbv12I	GWGCWC	1 cut(s)	260
BccI	CCATC	2 cut(s)	464, 535
BceAI	ACGGC	5 cut(s)	118, 206, 296, 313, 361
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	4 cut(s)	146, 302, 329, 379
BclI	TGATCA	1 cut(s)	334
BfmI	CTRYAG	3 cut(s)	154, 271, 387
BisI	GCNGC	4 cut(s)	67, 289, 349, 352
BlsI	GCNGC	4 cut(s)	68, 290, 350, 353
Bme1390I	CCNGG	4 cut(s)	146, 302, 329, 379
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	4 cut(s)	146, 302, 329, 379
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	3 cut(s)	30, 232, 274
BpmI	CTGGAG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 148
Bse1I	ACTGG	1 cut(s)	460
BseBI	CCWGG	4 cut(s)	146, 302, 329, 379
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	4 cut(s)	25, 217, 424, 546
BseLI	CCNNNNNNNGG	2 cut(s)	119, 148
BseNI	ACTGG	1 cut(s)	460
Bsh1236I	CGCG	4 cut(s)	47, 182, 189, 317
BshFI	GGCC	3 cut(s)	69, 123, 300
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	203, 261
BsiWI	CGTACG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	119, 148
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	3 cut(s)	69, 123, 300
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	334, 451
BspANI	GGCC	3 cut(s)	69, 123, 300
BspFNI	CGCG	4 cut(s)	47, 182, 189, 317
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	334, 451
Bst2UI	CCWGG	4 cut(s)	146, 302, 329, 379
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	4 cut(s)	25, 217, 424, 546
BstFNI	CGCG	4 cut(s)	47, 182, 189, 317
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	2 cut(s)	337, 454
BstMBI	GATC	2 cut(s)	334, 451
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 297, 357
BstNI	CCWGG	4 cut(s)	146, 302, 329, 379
BstSCI	CCNGG	4 cut(s)	144, 300, 327, 377
BstSFI	CTRYAG	3 cut(s)	154, 271, 387
BstUI	CGCG	4 cut(s)	47, 182, 189, 317
BstV2I	GAAGAC	3 cut(s)	30, 232, 274
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	69, 123, 300
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	4 cut(s)	25, 217, 424, 546
CaiI	CAGNNNCTG	1 cut(s)	395
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	107
CpoI	CGGWCCG	1 cut(s)	107
CseI	GACGC	2 cut(s)	91, 171
Csp6I	GTAC	1 cut(s)	319
CspI	CGGWCCG	1 cut(s)	107
CviAII	CATG	1 cut(s)	490
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	2 cut(s)	336, 453
DpnII	GATC	2 cut(s)	334, 451
EciI	GGCGGA	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	258
EcoRII	CCWGG	4 cut(s)	144, 300, 327, 377
EcoT38I	GRGCYC	1 cut(s)	260
FaeI	CATG	1 cut(s)	493
FaiI	YATR	5 cut(s)	491, 496, 501, 547, 549
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	1 cut(s)	489
FauI	CCCGC	2 cut(s)	149, 226
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	4 cut(s)	67, 289, 349, 352
FokI	GGATG	3 cut(s)	12, 224, 431
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	4 cut(s)	67, 289, 349, 352
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	4 cut(s)	67, 289, 349, 352
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	3 cut(s)	69, 123, 300
HapII	CCGG	2 cut(s)	203, 261
HgaI	GACGC	2 cut(s)	91, 171
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	1 cut(s)	493
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	5 cut(s)	199, 362, 382, 392, 527
HpaII	CCGG	2 cut(s)	203, 261
Hpy166II	GTNNAC	2 cut(s)	100, 226
Hpy188I	TCNGA	3 cut(s)	370, 409, 418
Hpy8I	GTNNAC	2 cut(s)	100, 226
Hpy99I	CGWCG	8 cut(s)	95, 98, 199, 227, 230, 317, 326, 374
HpyAV	CCTTC	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 297, 357
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	493
HspAI	GCGC	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	334, 451
LmnI	GCTCC	3 cut(s)	171, 255, 263
LweI	GCATC	1 cut(s)	34
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	2 cut(s)	336, 453
MboI	GATC	2 cut(s)	334, 451
MboII	GAAGA	5 cut(s)	30, 33, 232, 235, 274
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	1 cut(s)	7
MluI	ACGCGT	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	2 cut(s)	393, 396
MnlI	CCTC	7 cut(s)	134, 142, 143, 202, 229, 271, 376
MseI	TTAA	1 cut(s)	294
MspI	CCGG	2 cut(s)	203, 261
MspR9I	CCNGG	4 cut(s)	146, 302, 329, 379
MvaI	CCWGG	4 cut(s)	146, 302, 329, 379
MvnI	CGCG	4 cut(s)	47, 182, 189, 317
MwoI	GCNNNNNNNGC	3 cut(s)	188, 297, 357
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	2 cut(s)	334, 451
NlaIII	CATG	1 cut(s)	493
NmuCI	GTSAC	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	3 cut(s)	231, 273, 321
PfeI	GAWTC	4 cut(s)	199, 362, 392, 527
Pfl23II	CGTACG	1 cut(s)	318
PkrI	GCNGC	4 cut(s)	68, 290, 350, 353
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	260
Psp6I	CCWGG	4 cut(s)	144, 300, 327, 377
PspGI	CCWGG	4 cut(s)	144, 300, 327, 377
PspLI	CGTACG	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
Rsr2I	CGGWCCG	1 cut(s)	107
RsrII	CGGWCCG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	260
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	4 cut(s)	67, 289, 349, 352
Sau3AI	GATC	2 cut(s)	334, 451
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	4 cut(s)	146, 302, 329, 379
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	8 cut(s)	38, 99, 176, 240, 260, 282, 330, 508
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	3 cut(s)	154, 271, 387
SgrDI	CGTCGACG	1 cut(s)	224
SinI	GGWCC	1 cut(s)	107
Sse9I	AATT	1 cut(s)	7
SstI	GAGCTC	1 cut(s)	260
StyD4I	CCNGG	4 cut(s)	144, 300, 327, 377
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	4 cut(s)	197, 225, 246, 267
TasI	AATT	1 cut(s)	7
TauI	GCSGC	4 cut(s)	69, 291, 351, 354
TfiI	GAWTC	4 cut(s)	199, 362, 392, 527
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	2 cut(s)	443, 467
XmiI	GTMKAC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.