Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Reverse (-)

30011524 .. 30013598

Gene Structure 2075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023919

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCCTTCCAGCATCTGAAACCTGGGAAGGTTATTTTAGCTTGGGCTCGGCCACAACGAGGGCGGCTCAAGGATGATTGGTCGAAATTGCTGTTACCGAGCAGATCTAAGGAGCTGTTAGTGGTAATAGGCCAATGGGTTCCGAGATACCATGCTCTCCGATGCGCGGTGGTCAGATCTAGGGCAAAGTCGTTAAGCAACACGAAGATGGCTTTCACATCAGCAATGACGGCACGAAGCTATCAAAACGCGGTCCCCGCCGCCGCCATTGATGACGACAATAAGGAGTTCTTCAATGTGCGCAGCTCCGGCTTCTATTACTCTGAGGTCTTCGGAGGCTTCGACAGCCTGGATTTTGCCATCGCGTTCGACGACCTGGTCAAGCAACCCTACAACGGAGACGGTGGTTCCTCCGACGAAGCTTGGACTCTCAGCAGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.51

Weight (kDa)

9.48

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc16I	TGCGCA	1 cut(s)	302
AccII	CGCG	3 cut(s)	167, 251, 365
AciI	CCGC	6 cut(s)	64, 167, 251, 258, 261, 264
AcoI	YGGCCR	1 cut(s)	50
AfiI	CCNNNNNNNGG	3 cut(s)	59, 166, 395
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	3 cut(s)	22, 348, 375
AluBI	AGCT	5 cut(s)	41, 115, 240, 306, 422
AluI	AGCT	5 cut(s)	41, 115, 240, 306, 422
Alw26I	GTCTC	1 cut(s)	393
AlwNI	CAGNNNCTG	1 cut(s)	16
AoxI	GGCC	3 cut(s)	3, 50, 130
ApeKI	GCWGC	1 cut(s)	303
AspLEI	GCGC	2 cut(s)	167, 303
AspS9I	GGNCC	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	2 cut(s)	202, 368
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	3 cut(s)	24, 350, 377
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	2 cut(s)	180, 442
BglII	AGATCT	2 cut(s)	104, 176
BisI	GCNGC	4 cut(s)	65, 261, 264, 304
BlsI	GCNGC	4 cut(s)	66, 262, 265, 305
Bme1390I	CCNGG	3 cut(s)	24, 350, 377
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	3 cut(s)	141, 255, 409
BmrFI	CCNGG	3 cut(s)	24, 350, 377
BmsI	GCATC	2 cut(s)	22, 152
BpiI	GAAGAC	1 cut(s)	322
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 166, 395
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	3 cut(s)	24, 350, 377
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	3 cut(s)	59, 166, 395
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	315
Bsh1236I	CGCG	3 cut(s)	167, 251, 365
BshFI	GGCC	3 cut(s)	5, 52, 132
BsiSI	CCGG	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	3 cut(s)	59, 166, 395
BsmAI	GTCTC	1 cut(s)	393
BsmBI	CGTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	3 cut(s)	5, 52, 132
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	104, 176
BspACI	CCGC	6 cut(s)	64, 167, 251, 258, 261, 264
BspANI	GGCC	3 cut(s)	5, 52, 132
BspCNI	CTCAG	2 cut(s)	316, 444
BspFNI	CGCG	3 cut(s)	167, 251, 365
BspLI	GGNNCC	3 cut(s)	141, 255, 409
BsrDI	GCAATG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	2 cut(s)	104, 176
Bst2UI	CCWGG	3 cut(s)	24, 350, 377
Bst4CI	ACNGT	1 cut(s)	404
BstDEI	CTNAG	3 cut(s)	108, 324, 431
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	3 cut(s)	167, 251, 365
BstHHI	GCGC	2 cut(s)	167, 303
BstKTI	GATC	2 cut(s)	107, 179
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	2 cut(s)	104, 176
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 257, 309, 345
BstNI	CCWGG	3 cut(s)	24, 350, 377
BstSCI	CCNGG	3 cut(s)	22, 348, 375
BstUI	CGCG	3 cut(s)	167, 251, 365
BstV1I	GCAGC	1 cut(s)	315
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	2 cut(s)	104, 176
BstYI	RGATCY	2 cut(s)	104, 176
BsuRI	GGCC	3 cut(s)	5, 52, 132
BtgZI	GCGATG	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	16
CfoI	GCGC	2 cut(s)	167, 303
Cfr13I	GGNCC	1 cut(s)	253
CsiI	ACCWGGT	1 cut(s)	375
CviAII	CATG	1 cut(s)	152
DdeI	CTNAG	3 cut(s)	108, 324, 431
DpnI	GATC	2 cut(s)	106, 178
DpnII	GATC	2 cut(s)	104, 176
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	253
EcoRII	CCWGG	3 cut(s)	22, 348, 375
EcoT38I	GRGCYC	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	1 cut(s)	155
FaiI	YATR	1 cut(s)	153
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	1 cut(s)	151
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	4 cut(s)	65, 261, 264, 304
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	4 cut(s)	65, 261, 264, 304
FspBI	CTAG	2 cut(s)	180, 442
FspI	TGCGCA	1 cut(s)	302
GlaI	GCGC	2 cut(s)	166, 302
GluI	GCNGC	4 cut(s)	65, 261, 264, 304
HaeIII	GGCC	3 cut(s)	5, 52, 132
HapII	CCGG	1 cut(s)	309
HhaI	GCGC	2 cut(s)	167, 303
Hin1II	CATG	1 cut(s)	155
Hin6I	GCGC	2 cut(s)	165, 301
HinP1I	GCGC	2 cut(s)	165, 301
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	2 cut(s)	427, 438
HpaII	CCGG	1 cut(s)	309
Hpy188I	TCNGA	7 cut(s)	18, 144, 161, 176, 325, 335, 415
Hpy99I	CGWCG	2 cut(s)	374, 419
HpyAV	CCTTC	2 cut(s)	16, 22
HpyCH4III	ACNGT	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 257, 309, 345
HpyF3I	CTNAG	3 cut(s)	108, 324, 431
Hsp92II	CATG	1 cut(s)	155
HspAI	GCGC	2 cut(s)	165, 301
Kzo9I	GATC	2 cut(s)	104, 176
LmnI	GCTCC	2 cut(s)	112, 311
LpnPI	CCDG	8 cut(s)	9, 23, 36, 322, 335, 362, 362, 389
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	2 cut(s)	22, 152
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	2 cut(s)	180, 442
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	2 cut(s)	106, 178
MboI	GATC	2 cut(s)	104, 176
MboII	GAAGA	3 cut(s)	217, 283, 322
MflI	RGATCY	2 cut(s)	104, 176
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	4 cut(s)	53, 319, 329, 421
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	3 cut(s)	24, 350, 377
MvaI	CCWGG	3 cut(s)	24, 350, 377
MvnI	CGCG	3 cut(s)	167, 251, 365
MwoI	GCNNNNNNNGC	4 cut(s)	230, 257, 309, 345
NdeII	GATC	2 cut(s)	104, 176
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	3 cut(s)	141, 255, 409
NmeAIII	GCCGAG	1 cut(s)	28
NsbI	TGCGCA	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	3 cut(s)	55, 339, 369
PfeI	GAWTC	1 cut(s)	438
PflFI	GACNNNGTC	1 cut(s)	377
PkrI	GCNGC	4 cut(s)	66, 262, 265, 305
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Psp6I	CCWGG	3 cut(s)	22, 348, 375
PspGI	CCWGG	3 cut(s)	22, 348, 375
PspN4I	GGNNCC	3 cut(s)	141, 255, 409
PspPI	GGNCC	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	16
PsuI	RGATCY	2 cut(s)	104, 176
PsyI	GACNNNGTC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	4 cut(s)	65, 261, 264, 304
Sau3AI	GATC	2 cut(s)	104, 176
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	3 cut(s)	24, 350, 377
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	9 cut(s)	25, 33, 43, 117, 242, 308, 330, 378, 424
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	2 cut(s)	22, 152
SinI	GGWCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	6 cut(s)	64, 167, 251, 258, 261, 264
SspMI	CTAG	2 cut(s)	180, 442
StyD4I	CCNGG	3 cut(s)	22, 348, 375
TaaI	ACNGT	1 cut(s)	404
TaqI	TCGA	3 cut(s)	83, 342, 369
TasI	AATT	1 cut(s)	86
TauI	GCSGC	3 cut(s)	67, 263, 266
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseI	GCWGC	1 cut(s)	303
TspGWI	ACGGA	1 cut(s)	411
Tth111I	GACNNNGTC	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	253
XspI	CTAG	2 cut(s)	180, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.