Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Forward (+)

50584891 .. 50585883

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG359300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGCTTGGGAAAGTGCAGAGTTTATGACGGGCCGCCCAAGTTCGGCCTCTCCTCCTCCTCCTCCCTCTCCCAGCACCTTGAGGACTACGACGAGATTTTCGGGGCCTTCCACGCCTCACGCGCCTCCTCGATTCCCATGCTCGAGGTCTCGATCGCCGCCGCAGACGACGATGACAATGAGGAGTTCTTCAATGTGCGTAGCTCCGGCTTTGACTACTCTGAGGTCTTTGGAGGCTTCGACGGCTTGGATTTGGCAGTCGCGTACGACGACCTGGTCAAGCAACCCTTTGGCAGAGACGGTGATTCCTCCGACGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.59

Weight (kDa)

4.05

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccII	CGCG	2 cut(s)	123, 263
AciI	CCGC	3 cut(s)	35, 159, 162
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	3 cut(s)	6, 204, 320
AluI	AGCT	3 cut(s)	6, 204, 320
Alw26I	GTCTC	2 cut(s)	154, 291
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	3 cut(s)	32, 46, 105
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	32, 105
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	154, 291
BisI	GCNGC	3 cut(s)	35, 159, 162
BlsI	GCNGC	3 cut(s)	36, 160, 163
Bme1390I	CCNGG	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	32, 105
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	6 cut(s)	43, 46, 49, 52, 118, 197
BseYI	CCCAGC	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	37
Bsh1236I	CGCG	2 cut(s)	123, 263
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	34, 48, 107
BsiEI	CGRYCG	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	207
BsiWI	CGTACG	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	154, 291
BsmBI	CGTCTC	1 cut(s)	291
BsnI	GGCC	3 cut(s)	34, 48, 107
Bso31I	GGTCTC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	3 cut(s)	35, 159, 162
BspANI	GGCC	3 cut(s)	34, 48, 107
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	2 cut(s)	123, 263
BspLI	GGNNCC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	154
BssMI	GATC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	222
BstFNI	CGCG	2 cut(s)	123, 263
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	154, 291
BstMBI	GATC	1 cut(s)	153
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 122, 243
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	273
BstUI	CGCG	2 cut(s)	123, 263
BsuRI	GGCC	3 cut(s)	34, 48, 107
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	32, 105
CsiI	ACCWGGT	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	9 cut(s)	6, 34, 48, 107, 204, 210, 237, 246, 320
CviKI_1	RGCY	9 cut(s)	6, 34, 48, 107, 204, 210, 237, 246, 320
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	27, 140
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	35, 159, 162
Fsp4HI	GCNGC	3 cut(s)	35, 159, 162
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	3 cut(s)	35, 159, 162
GsaI	CCCAGC	1 cut(s)	76
HaeIII	GGCC	3 cut(s)	34, 48, 107
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	2 cut(s)	133, 305
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	2 cut(s)	223, 313
Hpy188III	TCNNGA	1 cut(s)	151
Hpy99I	CGWCG	5 cut(s)	95, 173, 245, 272, 317
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 122, 243
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	4 cut(s)	86, 220, 260, 287
MabI	ACCWGGT	1 cut(s)	273
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	1 cut(s)	181
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	2 cut(s)	123, 263
MwoI	GCNNNNNNNGC	3 cut(s)	113, 122, 243
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	133, 305
Pfl23II	CGTACG	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	36, 160, 163
Ple19I	CGATCG	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	273
PspLI	CGTACG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	2 cut(s)	32, 105
PspXI	VCTCGAGB	1 cut(s)	143
PsyI	GACNNNGTC	1 cut(s)	275
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SatI	GCNGC	3 cut(s)	35, 159, 162
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	2 cut(s)	32, 105
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	7 cut(s)	8, 81, 150, 206, 228, 276, 322
SexAI	ACCWGGT	1 cut(s)	273
Sfr274I	CTCGAG	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	80, 143
SmoI	CTYRAG	2 cut(s)	80, 143
SsiI	CCGC	3 cut(s)	35, 159, 162
StyD4I	CCNGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	302
TaqI	TCGA	4 cut(s)	131, 144, 152, 240
TauI	GCSGC	3 cut(s)	37, 161, 164
TfiI	GAWTC	2 cut(s)	133, 305
Tth111I	GACNNNGTC	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.