Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Reverse (-)

68682233 .. 68682418

Gene Structure 186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG424800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCTTCGCGCCTCCTTGATTCCAGTGCTAAAGGTCCCCGTCGCAGACGCAGTCGATGAAGATGACAATGAGGAATTCTTCAATGTGCGCTGCTTCGGCTTCGACTACTCGGAGGTCTTTGGAGGCTTCAATTGCCTGGATTTCGTCGTCGCGTACGACAACCTAGTCAAGCAACCCTACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

61

Amino Acids

6.9

Weight (kDa)

4.05

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccII	CGCG	2 cut(s)	9, 152
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	82, 130
AjnI	CCWGG	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	2 cut(s)	11, 90
AspS9I	GGNCC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	137
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	2 cut(s)	9, 152
BsiWI	CGTACG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
BspFNI	CGCG	2 cut(s)	9, 152
BspLI	GGNNCC	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	137
BstFNI	CGCG	2 cut(s)	9, 152
BstHHI	GCGC	2 cut(s)	11, 90
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 132
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstUI	CGCG	2 cut(s)	9, 152
BstV1I	GCAGC	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	30
CfoI	GCGC	2 cut(s)	11, 90
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	154
CviJI	RGCY	3 cut(s)	99, 126, 183
CviKI_1	RGCY	3 cut(s)	99, 126, 183
CviQI	GTAC	1 cut(s)	154
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	135
FaqI	GGGAC	1 cut(s)	20
Fnu4HI	GCNGC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	2 cut(s)	10, 89
GluI	GCNGC	1 cut(s)	91
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	2 cut(s)	11, 90
Hin6I	GCGC	2 cut(s)	9, 88
HinP1I	GCGC	2 cut(s)	9, 88
HinfI	GANTC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	112
Hpy99I	CGWCG	3 cut(s)	44, 149, 152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 132
HspAI	GCGC	2 cut(s)	9, 88
LpnPI	CCDG	3 cut(s)	36, 122, 149
Lsp1109I	GCAGC	1 cut(s)	77
MaeI	CTAG	1 cut(s)	164
MboII	GAAGA	2 cut(s)	70, 71
MfeI	CAATTG	1 cut(s)	130
MluCI	AATT	2 cut(s)	74, 130
MnlI	CCTC	4 cut(s)	22, 64, 106, 116
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	2 cut(s)	9, 152
MwoI	GCNNNNNNNGC	2 cut(s)	96, 132
NlaIV	GGNNCC	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	19
Pfl23II	CGTACG	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspLI	CGTACG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	34
PspPPI	RGGWCCY	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	50
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SatI	GCNGC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	3 cut(s)	36, 117, 165
SinI	GGWCC	1 cut(s)	34
Sse9I	AATT	2 cut(s)	74, 130
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	135
TaqI	TCGA	2 cut(s)	54, 102
TasI	AATT	2 cut(s)	74, 130
TfiI	GAWTC	1 cut(s)	19
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	30
Tth111I	GACNNNGTC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	74
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.