Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002396

Physical Location & Seq

Genomic Coordinates Reverse (-)

40849130 .. 40851038

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTTGATGGTGGCGACACTTCTTCCGGAAGAGTCTCTATAGGTGGCGGCAGATTGCTTGGCGTCGGTGTTACAGATCTAGCCGATTTGTTCAGCAATGCCTGGGTGCCCGACATCCGGGTGTCCAAATCGAAAGTTGGAGTGCACGGCCGGGTTTCTTTTGGGGCCAAGCGACGGGTGCTATCCCAAACCCAAGGTGTTGATGCGAGCGACGGCCCAAGTTCGGCCTCTCCTCCTCCTCCTCCTTCTCCCCGTGGCCTCGACTACGGCGAGATTTTTGGGGCCTTCCACACCTCACCAGCCTCCTCGATTCTCGTGCTCGGGGTCCCCCTTGCCTCCAACGACGACGACGGTGAGAAGTTCTTCAATGTACACGGCTCCGACTTCGACTACTCCAAGGTCTTCGAGAGACTTCGACCAGTGGATTTCGTCGTCATGTACGATGAGGAGGAAGAAGACGATAGTGATGGGGAGGTTGGGAGGTGGAGGTTTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

17.67

Weight (kDa)

4.62

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901 FvH4_1g12901
malus_domestica	MD00G1129800.v1.1 MD15G1257500.v1.1 MD15G1257600.v1.1
prunus_persica	Prupe.7G157600_v2.0.a1
pyrus_communis	pycom15g22530
rosa_chinensis	RchiOBHm_Chr2g0100991
rosa_laevigata	RLG00000010835 RLG00000017034 RLG00000023919 RLG00000033736
rosa_multiflora	Rmu_sc0001643.1_g000024 Rmu_sc0001862.1_g000007 Rmu_sc0010612.1_g000001 Rmu_sc0011777.1_g000003 Rmu_sc0014417.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141670 Rroxscaffold_3G00247540 Rroxscaffold_7G00162160
rosa_rugosa	Rorug02G0094900 Rorug02G0095000
rosa_samantha	Rh2AG142100 Rh2BG147200 Rh2BG342700 Rh2CG148500 Rh2CG321700 Rh2CG337000 Rh2DG147800 Rh2DG359300 Rh4AG272100 Rh5BG424800 Rh5CG448500 Rh6AG221000 Rh6BG443100 Rh6DG458500 Rh7CG224000
rosa_wichuraiana	Rw2G011150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccIII	TCCGGA	1 cut(s)	26
AciI	CCGC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	2 cut(s)	372, 440
AfiI	CCNNNNNNNGG	3 cut(s)	117, 174, 223
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	101
Alw21I	GWGCWC	2 cut(s)	147, 321
Alw26I	GTCTC	2 cut(s)	40, 403
Alw44I	GTGCAC	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	320
Aor13HI	TCCGGA	1 cut(s)	26
AoxI	GGCC	6 cut(s)	148, 165, 214, 225, 256, 282
ApaLI	GTGCAC	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	362
AspS9I	GGNCC	4 cut(s)	165, 215, 282, 325
AsuC2I	CCSGG	2 cut(s)	119, 152
AsuHPI	GGTGA	2 cut(s)	288, 365
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	325
BaeGI	GKGCMC	2 cut(s)	111, 147
BanI	GGYRCC	1 cut(s)	106
BauI	CACGAG	1 cut(s)	314
BbsI	GAAGAC	2 cut(s)	394, 462
Bbv12I	GWGCWC	2 cut(s)	147, 321
BccI	CCATC	2 cut(s)	2, 461
BceAI	ACGGC	4 cut(s)	163, 229, 283, 391
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	119, 152
BcoDI	GTCTC	2 cut(s)	40, 403
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	39
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme1390I	CCNGG	3 cut(s)	103, 119, 152
Bme18I	GGWCC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	4 cut(s)	165, 215, 282, 325
BmiI	GGNNCC	6 cut(s)	108, 166, 283, 326, 327, 379
BmrFI	CCNGG	3 cut(s)	103, 119, 152
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	2 cut(s)	394, 462
BpuMI	CCSGG	2 cut(s)	119, 152
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	4 cut(s)	102, 193, 253, 396
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 174, 223
Bse1I	ACTGG	1 cut(s)	419
Bse3DI	GCAATG	1 cut(s)	103
BseAI	TCCGGA	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	4 cut(s)	102, 193, 253, 396
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	117, 174, 223
BseMI	GCAATG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	6 cut(s)	222, 225, 228, 231, 295, 461
BseSI	GKGCMC	2 cut(s)	111, 147
BseX3I	CGGCCG	1 cut(s)	148
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	6 cut(s)	150, 167, 216, 227, 258, 284
BshNI	GGYRCC	1 cut(s)	106
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	2 cut(s)	147, 321
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	3 cut(s)	27, 118, 151
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	3 cut(s)	117, 174, 223
BsmAI	GTCTC	2 cut(s)	40, 403
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	6 cut(s)	150, 167, 216, 227, 258, 284
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	3 cut(s)	111, 147, 321
Bsp13I	TCCGGA	1 cut(s)	26
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	6 cut(s)	150, 167, 216, 227, 258, 284
BspEI	TCCGGA	1 cut(s)	26
BspLI	GGNNCC	6 cut(s)	108, 166, 283, 326, 327, 379
BspT107I	GGYRCC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	103
BsrGI	TGTACA	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	419
BssECI	CCNNGG	4 cut(s)	102, 193, 253, 396
BssMI	GATC	1 cut(s)	76
BssNI	GRCGYC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	2 cut(s)	193, 396
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	63
BstAUI	TGTACA	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	208
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	2 cut(s)	40, 403
BstMBI	GATC	1 cut(s)	76
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	3 cut(s)	101, 117, 150
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	2 cut(s)	111, 147
BstV2I	GAAGAC	2 cut(s)	394, 462
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BstZI	CGGCCG	1 cut(s)	148
BsuRI	GGCC	6 cut(s)	150, 167, 216, 227, 258, 284
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	1 cut(s)	208
Cfr13I	GGNCC	4 cut(s)	165, 215, 282, 325
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	371, 439
CviAII	CATG	1 cut(s)	436
CviJI	RGCY	9 cut(s)	83, 150, 167, 216, 227, 258, 284, 302, 378
CviKI_1	RGCY	9 cut(s)	83, 150, 167, 216, 227, 258, 284, 302, 378
CviQI	GTAC	2 cut(s)	371, 439
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	148
EagI	CGGCCG	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
EclXI	CGGCCG	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	193, 396
Eco47I	GGWCC	1 cut(s)	325
Eco52I	CGGCCG	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	320
EcoO109I	RGGNCCY	2 cut(s)	282, 325
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	2 cut(s)	193, 396
ErhI	CCWWGG	2 cut(s)	193, 396
FaeI	CATG	1 cut(s)	439
FaiI	YATR	2 cut(s)	41, 437
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	49
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	49
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	1 cut(s)	49
HaeIII	GGCC	6 cut(s)	150, 167, 216, 227, 258, 284
HapII	CCGG	3 cut(s)	27, 118, 151
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	439
HinfI	GANTC	2 cut(s)	33, 310
HpaII	CCGG	3 cut(s)	27, 118, 151
HphI	GGTGA	2 cut(s)	288, 365
Hpy166II	GTNNAC	2 cut(s)	145, 373
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	3 cut(s)	27, 406, 495
Hpy8I	GTNNAC	2 cut(s)	145, 373
Hpy99I	CGWCG	7 cut(s)	68, 177, 215, 347, 350, 353, 434
HpyAV	CCTTC	2 cut(s)	255, 295
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	439
KflI	GGGWCCC	1 cut(s)	325
Kpn2I	TCCGGA	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	383
LpnPI	CCDG	7 cut(s)	40, 88, 115, 131, 164, 312, 432
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	6 cut(s)	15, 42, 355, 394, 464, 467
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	3 cut(s)	111, 147, 321
MlyI	GAGTC	1 cut(s)	42
MmeI	TCCRAC	3 cut(s)	118, 363, 405
MroI	TCCGGA	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	119
MspI	CCGG	3 cut(s)	27, 118, 151
MspR9I	CCNGG	3 cut(s)	103, 119, 152
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	178
NciI	CCSGG	2 cut(s)	119, 152
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	439
NlaIV	GGNNCC	6 cut(s)	108, 166, 283, 326, 327, 379
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 438
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	50
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	6 cut(s)	108, 166, 283, 326, 327, 379
PspPI	GGNCC	4 cut(s)	165, 215, 282, 325
PspPPI	RGGWCCY	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	2 cut(s)	372, 440
RsaNI	GTAC	2 cut(s)	371, 439
RseI	CAYNNNNRTG	1 cut(s)	119
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	4 cut(s)	165, 215, 282, 325
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	3 cut(s)	103, 119, 152
SduI	GDGCHC	3 cut(s)	111, 147, 321
SetI	ASST	7 cut(s)	46, 199, 296, 402, 477, 485, 491
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	119
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	3 cut(s)	101, 117, 150
StyI	CCWWGG	2 cut(s)	193, 396
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	6 cut(s)	131, 261, 308, 387, 405, 415
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	1 cut(s)	426
TspRI	CASTG	1 cut(s)	426
VneI	GTGCAC	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.