Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000892

Physical Location & Seq

Genomic Coordinates Reverse (-)

32152762 .. 32158579

Gene Structure 5818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1146900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3267 bp

ATGGAGGTAAGTGGTAGTTTAGTTGCGGGATCTCACAACCTGAATGAACTTGTGGTCATCTGCCGTGATCGTGATCGTGAAGGTCAGGATGGGGAATCATCTGCTCTAAATGCCAAAGTGTTGAAGGGACAGATTTGCCAGATTTGTGGAGACGATGTAGGCCTAACTGCAGACGGAGAGCTGTTCGTCGCCTGTAACGAGTGTGCCTTTCCCATATGCCCAACTTGCTATGAATACGAGCGCAGTGAGGGTACCCAACTCTGTCCTAAGTGCAAGACCCGCTTCAAAAGGCTTAAGGGGTGTGCCAGGGTCCAGGGTGATGAAGAAGAAGAAGGCATCGATGATCTCGAGTACGAATTCAGTTTTGATGCAAGGAGCAGACAAGATATGCAACATGCGCTTTCTGCAGACGGCCACATGAGCTATGGTTGCACTTCTGACTCTGGTTTCTCTCATCCCATGTCCCAACTTTCGCTCCTTACTAACGGTCAAATGGCTGATGATGATATCCCTCCTGAACAACATGCTTTGATCCCTTCTTTCATGGGAACTACTGCTGGAGGAAAAAGGAAACACCCCATTCCTTCCTCAGACCCTGTCCTTCTAGTACAACCCAGAGCCATGGATCCTTTCAAAGACATGGCTGCTTATGGCTACGGTAGTGTTGCTTGGAAGGAGAGGATGGAGAGTTGGAAGCAAAAACAAGAGAAATTACAGATGATGAAACATGAAAATGGTGCCAAAGATTGGGACTATGATGATGACAATGGCCCTGATGTACCACTAATGGATGAGGCAAGACAGCCCTTGTCAAGAAAGTTGCCTATTCCATCGAGACAAATCAACCCTTATCGAATGATCATCATTATTCGACTTGTTGCCCTTGGATTCTTCTTTCATTATCGGGTCATGCATCCTGTAAATGATGCATATGCATTGTGGCTCATCTCAGTAATTTGTGAGATTTGGTTTGCTGTTTCATGGATTCTTGATCAGCTCCCAAAGTGGTTTCCCATTGATAGAGAAACTTATCTGGATAGATTATCCCTGAGGTACGAGAAGGAAGGCCAACCTTCACAACTTTGTCCAGTTGATATTTATGTCAGTACAGTTGATCCGCTGAAGGAGCCTCCTTTGGTGACTGCAAACACTGTACTTTCTATTCTAGCGGTGGACTACCCTGTTGACAAGGTCTCTTGTTATGTTTCAGATGATGGTGCCGCTATGTTGACATTTGAGGCACTGTCAGAAACATCAGAATTTGCTAGGAAGTGGGTCCCTTTCTGCAAGAAGTTTAGCATAGAACCACGGGCACCTGAATGGTATTTTGCAGAAAAGATGGATTATCTAAAAGATAAGGTGCTTCCATCATTTGTGAAAGAACGAAGAGCAATGAAGAGAGAGTATGAAGAGTTCAAAGTTCGAATAAATGCATTGGTTGTTAAAGCTCAGAAGGTTCCAGAAGAAGGATGGACGATGCAGGATGGAACTCCATGGCCTGGAAATAATGTTCGTGATCATCCTGGGATGATTCAGGTTTTTCTTGGCCAAAGTGGAAGATATGACACAGATGGGAAAGAATTACCACGCCTGGTATATGTTTCTAGAGAAAAAAGACATGGATTTAATCACCACAAAAAAGCTGGAGCAATGAATGCCTTGGTAAGAGTCTCTGCTGTTCTAACAAATGCGCCTTACTTGTTGAACTTGGATTGTGATCACTACATCAATAATAGTAAGGCTCTTAGAGAATCAATGTGTTTCATGATGGATCCGTTGCTAGGAAAGAGAGTGTGCTATGTCCAGTTCCCACAAAGATTTGATGGTATTGATAGGCATGACAGATATGCCAACCGAAACACAGTGTTCTTTGATATTAACATGAAAGGTTTGGATGGGATCCAAGGGCCTATCTATGTTGGGACTGGATGTGTCTTCACAAGGCAGGCTCTCTATGGTTATGATGCTCCAAAAACAAAGAAGCCACCAACTAGGACATGCAACTGCTTGCCAAAATGGTGCTGTTGCGGAAACTGTTTTTCTGGAAAAAGGAAGCAGAAGGCCAATAAACCTAAGACCGAAAAGAAGAGAAATTCCAGGAAGGAAGATACAATAGTTTTGATAAATGTCTCTGATCAGGAGGGTGTCGAAGAGAGCAATAAACGTAATCCCTTGCCTTCCACAAAATTTGGGCAGTCTCCGGTGTTTGTTGCATCCACCTTGCTGGAGGATGGCGGGACTCTGAAAAGCACTAGGCCAGCATCTCTGCTTAAAGAAGCGATCCATGTAATTAGTTGTGGCTATGAAGATAAAACAGAATGGGGAAAGGAGGTCGGCTGGATATACGGTTCAGTTACAGAGGATATCCTGACAGGCTTTAAAATGCATTGTCACGGTTGGAGATCGGTATACTGTATCCCTGCAAGGCCTGCATTTAAGGAATCAGCCCCCATTAATCTTTCCGATCGTTTGCACCAAGTCCTTCGGTGGGCCCTTGGATCAATTGAAATATTCTTGAGCAGGTATTGCCCTCTCTGGTATGGGTATGGAGGGGGTCTGAAGTGGTTGGAGCGTCTGTCTTACATAAACGCTACTGTGTACCCGTGGACATCAATTCCACTTCTTGCTTATTGCACTCTACCTGCTGTATGTCTGCTAACAGGAAAGTTCATCACTCCAGAGCTGAACAATGTGGCTAGTTTGTGGTTTCTGTCTCTTTTCATCAGCATTTTTACAACGAGCGTATTGGAAATGAGATGGAGTGGAGTTGGCATCGACGAATGGTGGAGAAATGAGCAGTTTTGGGTGATTGGCGGGGTGTCGGCGCATTTGTTTGCTGTGTTTCAAGGGATTCTAAAGGTGCTAGCCGGCGTTGATACAAACTTTACGGTGACATCAAAAGCAGGGGACGACGCGGATTTCTCAGAGCTGTATGCATTTAGGTGGACCACATTGCTCATCCCACCAACCACGTTGCTTATTATAAACTTGATCGGAGTAGTTGCCGGAGTCTCGAATGCAATAAACAACGGTTATGAGTCATGGGGGCCACTGTTAGGTAAGCTCTTGTTTGCGTTCTGGGTGATCATTCACCTCTATCCTTTCCTCAAGGGTCTGCTTGGTAGGCAGAACAGGACTCCTACAATCATTATAGTGTGGTCAATAATGCTGGCTGCCATCTTTTCGCTTTTTTGGGTTCGGGTTGATCCGTTCTTGGCCAAGTCAGATGACCCAACCCTGGAGGAATGCGGATTAGACTGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

1089

Amino Acids

123.15

Weight (kDa)

6.44

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	39 - 112	3.4e-38	Zinc-binding RING-finger
Cellulose_synt	PF03552	364 - 1080	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	777 - 883	1.6e-07	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21770 AT4G39350 AT5G09870 AT5G64740
fragaria_vesca	FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_5g26830 FvH4_5g26830 FvH4_5g26830
malus_domestica	MD00G1146900.v1.1 MD05G1029400.v1.1 MD10G1029800.v1.1 MD15G1340200.v1.1
prunus_persica	Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.8G035100_v2.0.a1
pyrus_communis	pycom01g03410 pycom01g03420 pycom01g03470 pycom05g02060 pycom05g02070 pycom15g29990
rosa_chinensis	RchiOBHm_Chr2g0119881 RchiOBHm_Chr6g0274931 RchiOBHm_Chr7g0217741
rosa_laevigata	RLG00000002442 RLG00000013507 RLG00000018496
rosa_multiflora	Rmu_sc0000202.1_g000022 Rmu_sc0001501.1_g000028 Rmu_sc0007760.1_g000002
rosa_roxburghii	Rroxscaffold_2G00124010 Rroxscaffold_3G00241720 Rroxscaffold_7G00193790
rosa_rugosa	Rorug02G0224300 Rorug02G0224400 Rorug02G0224500 Rorug06G0086400 Rorug06G0086500 Rorug07G0170900.1
rosa_samantha	Rh2AG282100 Rh2BG293400 Rh2DG288300 Rh2DG307400 Rh6AG201300 Rh6BG204900 Rh6CG206300 Rh6DG196400 Rh7AG311600 Rh7BG303500 Rh7CG330400
rosa_wichuraiana	Rw2G022520 Rw6G017510 Rw7G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2984
Acc36I	ACCTGC	2 cut(s)	2511, 2650
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	4 cut(s)	251, 737, 1217, 1312
AccB7I	CCANNNNNTGG	2 cut(s)	747, 1499
AccI	GTMKAC	1 cut(s)	2409
AccII	CGCG	1 cut(s)	2915
AcoI	YGGCCR	3 cut(s)	412, 1546, 3216
AcsI	RAATTY	4 cut(s)	356, 1259, 2092, 2186
AcuI	CTGAAG	2 cut(s)	1142, 2579
AfaI	GTAC	8 cut(s)	253, 353, 609, 780, 1055, 1108, 1155, 2600
AfiI	CCNNNNNNNGG	7 cut(s)	747, 1466, 1499, 1781, 2488, 3056, 3238
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	7 cut(s)	124, 286, 634, 1417, 1705, 2507, 2846
AjnI	CCWGG	7 cut(s)	305, 312, 1498, 1522, 1590, 2096, 3237
AloI	GAACNNNNNNTCC	4 cut(s)	1494, 1526, 2332, 2364
AluBI	AGCT	8 cut(s)	181, 423, 997, 1448, 1643, 2683, 2929, 3064
AluI	AGCT	8 cut(s)	181, 423, 997, 1448, 1643, 2683, 2929, 3064
Alw26I	GTCTC	8 cut(s)	144, 829, 1198, 1675, 2134, 2202, 2718, 3016
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	347
ApaI	GGGCCC	1 cut(s)	2494
ApeKI	GCWGC	2 cut(s)	644, 3173
ApoI	RAATTY	4 cut(s)	356, 1259, 2092, 2186
AseI	ATTAAT	1 cut(s)	2454
Asp718I	GGTACC	1 cut(s)	251
AspLEI	GCGC	4 cut(s)	243, 400, 1693, 2827
AspS9I	GGNCC	8 cut(s)	310, 770, 1276, 1907, 2490, 2491, 2946, 3047
AsuHPI	GGTGA	7 cut(s)	329, 1150, 1622, 2818, 2902, 3083, 3094
AsuII	TTCGAA	1 cut(s)	1423
AsuNHI	GCTAGC	1 cut(s)	2863
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	3 cut(s)	310, 1276, 2946
AxyI	CCTNAGG	1 cut(s)	1049
BaeGI	GKGCMC	2 cut(s)	1315, 2494
BaeI	ACNNNNGTAYC	2 cut(s)	2100, 2133
BalI	TGGCCA	2 cut(s)	1548, 3218
BamHI	GGATCC	3 cut(s)	625, 1771, 1899
BanI	GGYRCC	4 cut(s)	251, 737, 1217, 1312
BanII	GRGCYC	1 cut(s)	2494
BbsI	GAAGAC	1 cut(s)	1927
BbvI	GCAGC	2 cut(s)	631, 3160
BceAI	ACGGC	2 cut(s)	48, 427
BciT130I	CCWGG	7 cut(s)	307, 314, 1500, 1524, 1592, 2098, 3239
BciVI	GTATCC	1 cut(s)	2426
BclI	TGATCA	6 cut(s)	858, 991, 1516, 1717, 2134, 3084
BcoDI	GTCTC	8 cut(s)	144, 829, 1198, 1675, 2134, 2202, 2718, 3016
BfaI	CTAG	9 cut(s)	605, 1166, 1266, 1605, 1781, 1992, 2253, 2697, 2864
BfmI	CTRYAG	2 cut(s)	168, 405
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	2 cut(s)	2511, 2650
BfuI	GTATCC	1 cut(s)	2426
BisI	GCNGC	3 cut(s)	645, 1221, 3174
BlsI	GCNGC	3 cut(s)	646, 1222, 3175
Bme1390I	CCNGG	7 cut(s)	307, 314, 1500, 1524, 1592, 2098, 3239
Bme18I	GGWCC	3 cut(s)	310, 1276, 2946
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	8 cut(s)	310, 770, 1276, 1907, 2490, 2491, 2946, 3047
BmrFI	CCNGG	7 cut(s)	307, 314, 1500, 1524, 1592, 2098, 3239
BmsI	GCATC	9 cut(s)	345, 358, 916, 922, 1467, 1954, 2222, 2270, 2781
BmtI	GCTAGC	1 cut(s)	2867
BpiI	GAAGAC	1 cut(s)	1927
BpmI	CTGGAG	5 cut(s)	579, 1665, 2246, 2661, 3260
Bpu14I	TTCGAA	1 cut(s)	1423
BpuEI	CTTGAG	2 cut(s)	2536, 3092
Bsa29I	ATCGAT	1 cut(s)	339
BsaBI	GATNNNNATC	2 cut(s)	72, 1716
BsaI	GGTCTC	1 cut(s)	1198
BsaWI	WCCGGW	1 cut(s)	2200
BsaXI	ACNNNNNCTCC	6 cut(s)	141, 171, 459, 489, 2561, 2591
Bsc4I	CCNNNNNNNGG	7 cut(s)	747, 1466, 1499, 1781, 2488, 3056, 3238
Bse118I	RCCGGY	1 cut(s)	2867
Bse1I	ACTGG	3 cut(s)	1088, 1804, 1930
Bse21I	CCTNAGG	1 cut(s)	1049
Bse3DI	GCAATG	3 cut(s)	1398, 1656, 2951
Bse8I	GATNNNNATC	2 cut(s)	72, 1716
BseBI	CCWGG	7 cut(s)	307, 314, 1500, 1524, 1592, 2098, 3239
BseCI	ATCGAT	1 cut(s)	339
BseJI	GATNNNNATC	2 cut(s)	72, 1716
BseLI	CCNNNNNNNGG	7 cut(s)	747, 1466, 1499, 1781, 2488, 3056, 3238
BseMI	GCAATG	3 cut(s)	1398, 1656, 2951
BseMII	CTCAG	5 cut(s)	603, 963, 1040, 1463, 2937
BseNI	ACTGG	3 cut(s)	1088, 1804, 1930
BseSI	GKGCMC	2 cut(s)	1315, 2494
BseXI	GCAGC	2 cut(s)	631, 3160
Bsh1236I	CGCG	1 cut(s)	2915
Bsh1285I	CGRYCG	1 cut(s)	2467
BshNI	GGYRCC	4 cut(s)	251, 737, 1217, 1312
BshVI	ATCGAT	1 cut(s)	339
BsiEI	CGRYCG	1 cut(s)	2467
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	3 cut(s)	2201, 2868, 3006
BslFI	GGGAC	7 cut(s)	141, 448, 764, 1262, 1936, 2251, 2921
BslI	CCNNNNNNNGG	7 cut(s)	747, 1466, 1499, 1781, 2488, 3056, 3238
BsmAI	GTCTC	8 cut(s)	144, 829, 1198, 1675, 2134, 2202, 2718, 3016
BsmBI	CGTCTC	1 cut(s)	144
BsmFI	GGGAC	7 cut(s)	141, 448, 764, 1262, 1936, 2251, 2921
BsmI	GAATGC	3 cut(s)	1660, 3022, 3251
Bso31I	GGTCTC	1 cut(s)	1198
BsoBI	CYCGRG	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	1423
Bsp120I	GGGCCC	1 cut(s)	2490
Bsp1286I	GDGCHC	2 cut(s)	1315, 2494
Bsp19I	CCATGG	2 cut(s)	621, 1493
BspCNI	CTCAG	5 cut(s)	602, 962, 1041, 1462, 2936
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	2915
BspHI	TCATGA	1 cut(s)	1764
BspMAI	CTGCAG	2 cut(s)	172, 409
BspMI	ACCTGC	2 cut(s)	2511, 2650
BspOI	GCTAGC	1 cut(s)	2867
BspQI	GCTCTTC	1 cut(s)	1381
BspT104I	TTCGAA	1 cut(s)	1423
BspT107I	GGYRCC	4 cut(s)	251, 737, 1217, 1312
BspTI	CTTAAG	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	1198
BsrDI	GCAATG	3 cut(s)	1398, 1656, 2951
BsrFI	RCCGGY	1 cut(s)	2867
BsrI	ACTGG	3 cut(s)	1088, 1804, 1930
BssAI	RCCGGY	1 cut(s)	2867
BssNAI	GTATAC	1 cut(s)	2410
BssT1I	CCWWGG	6 cut(s)	621, 883, 1493, 1659, 1903, 2494
Bst1107I	GTATAC	1 cut(s)	2410
Bst2UI	CCWGG	7 cut(s)	307, 314, 1500, 1524, 1592, 2098, 3239
Bst6I	CTCTTC	5 cut(s)	1381, 1391, 1404, 2081, 2145
BstAFI	CTTAAG	1 cut(s)	293
BstAPI	GCANNNNNTGC	3 cut(s)	1655, 2429, 2526
BstBI	TTCGAA	1 cut(s)	1423
BstC8I	GCNNGC	7 cut(s)	1947, 2009, 2259, 2430, 2865, 2869, 3171
BstDEI	CTNAG	8 cut(s)	267, 589, 949, 1049, 1449, 1745, 2073, 2923
BstDSI	CCRYGG	4 cut(s)	621, 1307, 1493, 2603
BstFNI	CGCG	1 cut(s)	2915
BstHHI	GCGC	4 cut(s)	243, 400, 1693, 2827
BstMAI	GTCTC	8 cut(s)	144, 829, 1198, 1675, 2134, 2202, 2718, 3016
BstMCI	CGRYCG	1 cut(s)	2467
BstNI	CCWGG	7 cut(s)	307, 314, 1500, 1524, 1592, 2098, 3239
BstNSI	RCATGY	3 cut(s)	398, 527, 2001
BstSCI	CCNGG	7 cut(s)	305, 312, 1498, 1522, 1590, 2096, 3237
BstSFI	CTRYAG	2 cut(s)	168, 405
BstSLI	GKGCMC	2 cut(s)	1315, 2494
BstUI	CGCG	1 cut(s)	2915
BstV1I	GCAGC	2 cut(s)	631, 3160
BstV2I	GAAGAC	1 cut(s)	1927
BstX2I	RGATCY	4 cut(s)	29, 625, 1771, 1899
BstXI	CCANNNNNNTGG	3 cut(s)	146, 622, 2224
BstYI	RGATCY	4 cut(s)	29, 625, 1771, 1899
BstZ17I	GTATAC	1 cut(s)	2410
Bsu15I	ATCGAT	1 cut(s)	339
Bsu36I	CCTNAGG	1 cut(s)	1049
BsuI	GTATCC	1 cut(s)	2426
BsuTUI	ATCGAT	1 cut(s)	339
BtgI	CCRYGG	4 cut(s)	621, 1307, 1493, 2603
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	5 cut(s)	250, 1149, 1241, 1869, 3050
BveI	ACCTGC	2 cut(s)	2511, 2650
Cac8I	GCNNGC	7 cut(s)	1947, 2009, 2259, 2430, 2865, 2869, 3171
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	1 cut(s)	1764
CfoI	GCGC	4 cut(s)	243, 400, 1693, 2827
Cfr10I	RCCGGY	1 cut(s)	2867
Cfr13I	GGNCC	8 cut(s)	310, 770, 1276, 1907, 2490, 2491, 2946, 3047
ClaI	ATCGAT	1 cut(s)	339
CseI	GACGC	2 cut(s)	2561, 2921
Csp6I	GTAC	8 cut(s)	252, 352, 608, 779, 1054, 1107, 1154, 2599
CspCI	CAANNNNNGTGG	2 cut(s)	2170, 2205
CviQI	GTAC	8 cut(s)	252, 352, 608, 779, 1054, 1107, 1154, 2599
DdeI	CTNAG	8 cut(s)	267, 589, 949, 1049, 1449, 1745, 2073, 2923
DraI	TTTAAA	1 cut(s)	2380
EaeI	YGGCCR	3 cut(s)	412, 1546, 3216
Eam1104I	CTCTTC	5 cut(s)	1381, 1391, 1404, 2081, 2145
EarI	CTCTTC	5 cut(s)	1381, 1391, 1404, 2081, 2145
Eco130I	CCWWGG	6 cut(s)	621, 883, 1493, 1659, 1903, 2494
Eco147I	AGGCCT	2 cut(s)	162, 2428
Eco24I	GRGCYC	1 cut(s)	2494
Eco31I	GGTCTC	1 cut(s)	1198
Eco32I	GATATC	2 cut(s)	508, 2365
Eco47I	GGWCC	3 cut(s)	310, 1276, 2946
Eco57I	CTGAAG	2 cut(s)	1142, 2579
Eco81I	CCTNAGG	1 cut(s)	1049
Eco88I	CYCGRG	1 cut(s)	347
EcoO109I	RGGNCCY	3 cut(s)	1276, 1907, 2491
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	7 cut(s)	305, 312, 1498, 1522, 1590, 2096, 3237
EcoRV	GATATC	2 cut(s)	508, 2365
EcoT14I	CCWWGG	6 cut(s)	621, 883, 1493, 1659, 1903, 2494
EcoT22I	ATGCAT	6 cut(s)	915, 931, 937, 1435, 2388, 2938
EcoT38I	GRGCYC	1 cut(s)	2494
ErhI	CCWWGG	6 cut(s)	621, 883, 1493, 1659, 1903, 2494
Esp3I	CGTCTC	1 cut(s)	144
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	7 cut(s)	141, 448, 764, 1262, 1936, 2251, 2921
FauI	CCCGC	4 cut(s)	19, 287, 2228, 2807
FauNDI	CATATG	2 cut(s)	215, 931
FbaI	TGATCA	6 cut(s)	858, 991, 1516, 1717, 2134, 3084
FblI	GTMKAC	1 cut(s)	2409
Fnu4HI	GCNGC	3 cut(s)	645, 1221, 3174
FriOI	GRGCYC	1 cut(s)	2494
Fsp4HI	GCNGC	3 cut(s)	645, 1221, 3174
FspBI	CTAG	9 cut(s)	605, 1166, 1266, 1605, 1781, 1992, 2253, 2697, 2864
GlaI	GCGC	4 cut(s)	242, 399, 1692, 2826
GluI	GCNGC	3 cut(s)	645, 1221, 3174
GsuI	CTGGAG	5 cut(s)	579, 1665, 2246, 2661, 3260
HapII	CCGG	3 cut(s)	2201, 2868, 3006
HgaI	GACGC	2 cut(s)	2561, 2921
HhaI	GCGC	4 cut(s)	243, 400, 1693, 2827
Hin6I	GCGC	4 cut(s)	241, 398, 1691, 2825
HinP1I	GCGC	4 cut(s)	241, 398, 1691, 2825
HincII	GTYRAC	2 cut(s)	1186, 1230
HindII	GTYRAC	2 cut(s)	1186, 1230
HpaII	CCGG	3 cut(s)	2201, 2868, 3006
HphI	GGTGA	7 cut(s)	329, 1150, 1622, 2818, 2902, 3083, 3094
Hpy166II	GTNNAC	7 cut(s)	1174, 1186, 1230, 2410, 2599, 2607, 2946
Hpy8I	GTNNAC	7 cut(s)	1174, 1186, 1230, 2410, 2599, 2607, 2946
Hpy99I	CGWCG	3 cut(s)	191, 2780, 2915
HpyCH4IV	ACGT	2 cut(s)	2164, 2972
HpyF3I	CTNAG	8 cut(s)	267, 589, 949, 1049, 1449, 1745, 2073, 2923
HpySE526I	ACGT	2 cut(s)	2164, 2972
HspAI	GCGC	4 cut(s)	241, 398, 1691, 2825
KflI	GGGWCCC	1 cut(s)	1276
KpnI	GGTACC	1 cut(s)	255
KroI	GCCGGC	1 cut(s)	2867
KroNI	GCCGGC	1 cut(s)	2869
Ksp22I	TGATCA	6 cut(s)	858, 991, 1516, 1717, 2134, 3084
LguI	GCTCTTC	1 cut(s)	1381
LmnI	GCTCC	7 cut(s)	375, 480, 1002, 1126, 1646, 1972, 2569
Lsp1109I	GCAGC	2 cut(s)	631, 3160
LweI	GCATC	9 cut(s)	345, 358, 916, 922, 1467, 1954, 2222, 2270, 2781
MaeI	CTAG	9 cut(s)	605, 1166, 1266, 1605, 1781, 1992, 2253, 2697, 2864
MaeII	ACGT	2 cut(s)	2164, 2972
MaeIII	GTNAC	5 cut(s)	194, 1138, 2353, 2390, 2890
MfeI	CAATTG	1 cut(s)	2502
MflI	RGATCY	4 cut(s)	29, 625, 1771, 1899
MhlI	GDGCHC	2 cut(s)	1315, 2494
MlsI	TGGCCA	2 cut(s)	1548, 3218
MluNI	TGGCCA	2 cut(s)	1548, 3218
MlyI	GAGTC	6 cut(s)	434, 1677, 2233, 3018, 3047, 3130
MmeI	TCCRAC	3 cut(s)	671, 2378, 2547
Mox20I	TGGCCA	2 cut(s)	1548, 3218
Mph1103I	ATGCAT	6 cut(s)	915, 931, 937, 1435, 2388, 2938
MroNI	GCCGGC	1 cut(s)	2867
MscI	TGGCCA	2 cut(s)	1548, 3218
MseI	TTAA	9 cut(s)	294, 1443, 1626, 1878, 2271, 2379, 2436, 2454, 3265
MslI	CAYNNNNRTG	4 cut(s)	732, 1318, 2941, 3152
Msp20I	TGGCCA	2 cut(s)	1548, 3218
MspA1I	CMGCKG	1 cut(s)	1120
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	3 cut(s)	2201, 2868, 3006
MspR9I	CCNGG	7 cut(s)	307, 314, 1500, 1524, 1592, 2098, 3239
MunI	CAATTG	1 cut(s)	2502
Mva1269I	GAATGC	3 cut(s)	1660, 3022, 3251
MvaI	CCWGG	7 cut(s)	307, 314, 1500, 1524, 1592, 2098, 3239
MvnI	CGCG	1 cut(s)	2915
NaeI	GCCGGC	1 cut(s)	2869
NcoI	CCATGG	2 cut(s)	621, 1493
NdeI	CATATG	2 cut(s)	215, 931
NgoMIV	GCCGGC	1 cut(s)	2867
NheI	GCTAGC	1 cut(s)	2863
NmuCI	GTSAC	3 cut(s)	1138, 2390, 2890
NsiI	ATGCAT	6 cut(s)	915, 931, 937, 1435, 2388, 2938
NspI	RCATGY	3 cut(s)	398, 527, 2001
NspV	TTCGAA	1 cut(s)	1423
PaeR7I	CTCGAG	1 cut(s)	347
PagI	TCATGA	1 cut(s)	1764
PceI	AGGCCT	2 cut(s)	162, 2428
PciSI	GCTCTTC	1 cut(s)	1381
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 345
PctI	GAATGC	3 cut(s)	1660, 3022, 3251
PdiI	GCCGGC	1 cut(s)	2869
PfeI	GAWTC	7 cut(s)	95, 888, 985, 1531, 1751, 2441, 2851
PflFI	GACNNNGTC	2 cut(s)	596, 1190
PflMI	CCANNNNNTGG	2 cut(s)	747, 1499
PfoI	TCCNGGA	1 cut(s)	2096
PkrI	GCNGC	3 cut(s)	646, 1222, 3175
Ple19I	CGATCG	1 cut(s)	2467
PleI	GAGTC	6 cut(s)	434, 1676, 2233, 3017, 3046, 3130
PpsI	GAGTC	6 cut(s)	434, 1676, 2233, 3017, 3046, 3130
PpuMI	RGGWCCY	1 cut(s)	1276
PshBI	ATTAAT	1 cut(s)	2454
PsiI	TTATAA	1 cut(s)	2984
Psp5II	RGGWCCY	1 cut(s)	1276
Psp6I	CCWGG	7 cut(s)	305, 312, 1498, 1522, 1590, 2096, 3237
PspGI	CCWGG	7 cut(s)	305, 312, 1498, 1522, 1590, 2096, 3237
PspOMI	GGGCCC	1 cut(s)	2490
PspPI	GGNCC	8 cut(s)	310, 770, 1276, 1907, 2490, 2491, 2946, 3047
PspPPI	RGGWCCY	1 cut(s)	1276
PsrI	GAACNNNNNNTAC	2 cut(s)	1397, 1429
PstI	CTGCAG	2 cut(s)	172, 409
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	4 cut(s)	29, 625, 1771, 1899
PsyI	GACNNNGTC	2 cut(s)	596, 1190
PvuI	CGATCG	1 cut(s)	2467
RsaI	GTAC	8 cut(s)	253, 353, 609, 780, 1055, 1108, 1155, 2600
RsaNI	GTAC	8 cut(s)	252, 352, 608, 779, 1054, 1107, 1154, 2599
RseI	CAYNNNNRTG	4 cut(s)	732, 1318, 2941, 3152
SapI	GCTCTTC	1 cut(s)	1381
SaqAI	TTAA	9 cut(s)	294, 1443, 1626, 1878, 2271, 2379, 2436, 2454, 3265
SatI	GCNGC	3 cut(s)	645, 1221, 3174
Sau96I	GGNCC	8 cut(s)	310, 770, 1276, 1907, 2490, 2491, 2946, 3047
SchI	GAGTC	6 cut(s)	434, 1677, 2233, 3018, 3047, 3130
ScrFI	CCNGG	7 cut(s)	307, 314, 1500, 1524, 1592, 2098, 3239
SduI	GDGCHC	2 cut(s)	1315, 2494
SfaNI	GCATC	9 cut(s)	345, 358, 916, 922, 1467, 1954, 2222, 2270, 2781
SfcI	CTRYAG	2 cut(s)	168, 405
Sfr274I	CTCGAG	1 cut(s)	347
SfuI	TTCGAA	1 cut(s)	1423
SinI	GGWCC	3 cut(s)	310, 1276, 2946
SlaI	CTCGAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	4 cut(s)	732, 1318, 2941, 3152
SmlI	CTYRAG	4 cut(s)	293, 347, 2515, 3107
SmoI	CTYRAG	4 cut(s)	293, 347, 2515, 3107
SseBI	AGGCCT	2 cut(s)	162, 2428
SspI	AATATT	1 cut(s)	2511
SspMI	CTAG	9 cut(s)	605, 1166, 1266, 1605, 1781, 1992, 2253, 2697, 2864
StuI	AGGCCT	2 cut(s)	162, 2428
StyD4I	CCNGG	7 cut(s)	305, 312, 1498, 1522, 1590, 2096, 3237
StyI	CCWWGG	6 cut(s)	621, 883, 1493, 1659, 1903, 2494
TaiI	ACGT	2 cut(s)	2167, 2975
TaqI	TCGA	9 cut(s)	339, 348, 833, 853, 871, 1423, 2148, 2775, 3014
TaqII	GACCGA	1 cut(s)	2093
TatI	WGTACW	3 cut(s)	607, 1106, 1153
TauI	GCSGC	1 cut(s)	1223
TfiI	GAWTC	7 cut(s)	95, 888, 985, 1531, 1751, 2441, 2851
Tru1I	TTAA	9 cut(s)	294, 1443, 1626, 1878, 2271, 2379, 2436, 2454, 3265
Tru9I	TTAA	9 cut(s)	294, 1443, 1626, 1878, 2271, 2379, 2436, 2454, 3265
TscAI	CASTG	5 cut(s)	250, 1156, 1248, 1869, 3057
TseFI	GTSAC	3 cut(s)	1138, 2390, 2890
TseI	GCWGC	2 cut(s)	644, 3173
Tsp45I	GTSAC	3 cut(s)	1138, 2390, 2890
TspGWI	ACGGA	3 cut(s)	189, 1764, 3198
TspRI	CASTG	5 cut(s)	250, 1156, 1248, 1869, 3057
Tth111I	GACNNNGTC	2 cut(s)	596, 1190
Van91I	CCANNNNNTGG	2 cut(s)	747, 1499
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	3 cut(s)	310, 1276, 2946
VspI	ATTAAT	1 cut(s)	2454
XapI	RAATTY	4 cut(s)	356, 1259, 2092, 2186
XbaI	TCTAGA	1 cut(s)	1604
XceI	RCATGY	3 cut(s)	398, 527, 2001
XcmI	CCANNNNNNNNNTGG	3 cut(s)	422, 1467, 1640
XhoI	CTCGAG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	2409
XspI	CTAG	9 cut(s)	605, 1166, 1266, 1605, 1781, 1992, 2253, 2697, 2864
Zsp2I	ATGCAT	6 cut(s)	915, 931, 937, 1435, 2388, 2938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.