Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000892

Physical Location & Seq

Genomic Coordinates Forward (+)

11601384 .. 11603123

Gene Structure 1740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0086500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCAGATTTTTACGGGTTTTTGGTGGTTTAGGGCTCGCGAGTTGTTCTACTATTTGAAAGGTGGGCAGGTCGATTATGGTGAAGAACACAGCAAAGCCTATAGGCATTCCCAAACCTCATATCATAGCAAGTCTCAAGTTTTGGTTGTTGTTGAATTGCAAGGCCGGCACTACCCTGAATGGGATGAGTATCATCCTATTCACTTTGTGGGCCATTCTGCCGGAGCTCAGGTCGTCTGGTTCTGCAGCAAATGCTCGGTGATAAGAACATTGATAAATCCCTCTGGTGAAATGTCCTGTGCTGTGGCCAAGTCTTCGATGAATTTTACAAGTCTTCATGGCTTTATGGCTCTGTCTGGTCATATGGGATCTGATATGATCACTTCTGGTCAGAAGTCCATTATGCTTGCAAGGGTAGGAGCTTTTATATTGTGTGCATTGATTGAAAGCTCTGAGGAACCACAAACAATGAAAGGAAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0005975 GO:0005976 GO:0006073 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009825 GO:0009832 GO:0009833 GO:0009987 GO:0010330 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031224 GO:0031226 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

161

Amino Acids

18.23

Weight (kDa)

7.77

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lip_C	PF24708	9 - 79	4.9e-09	Lipase-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21770 AT4G39350 AT5G09870 AT5G64740
fragaria_vesca	FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_5g26830 FvH4_5g26830 FvH4_5g26830
malus_domestica	MD00G1146900.v1.1 MD05G1029400.v1.1 MD10G1029800.v1.1 MD15G1340200.v1.1
prunus_persica	Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.8G035100_v2.0.a1
pyrus_communis	pycom01g03410 pycom01g03420 pycom01g03470 pycom05g02060 pycom05g02070 pycom15g29990
rosa_chinensis	RchiOBHm_Chr2g0119881 RchiOBHm_Chr6g0274931 RchiOBHm_Chr7g0217741
rosa_laevigata	RLG00000002442 RLG00000013507 RLG00000018496
rosa_multiflora	Rmu_sc0000202.1_g000022 Rmu_sc0001501.1_g000028 Rmu_sc0007760.1_g000002
rosa_roxburghii	Rroxscaffold_2G00124010 Rroxscaffold_3G00241720 Rroxscaffold_7G00193790
rosa_rugosa	Rorug02G0224300 Rorug02G0224400 Rorug02G0224500 Rorug06G0086400 Rorug06G0086500 Rorug07G0170900.1
rosa_samantha	Rh2AG282100 Rh2BG293400 Rh2DG288300 Rh2DG307400 Rh6AG201300 Rh6BG204900 Rh6CG206300 Rh6DG196400 Rh7AG311600 Rh7BG303500 Rh7CG330400
rosa_wichuraiana	Rw2G022520 Rw6G017510 Rw7G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	58
AccII	CGCG	1 cut(s)	39
AclWI	GGATC	1 cut(s)	376
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	322
AdeI	CACNNNGTG	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	58, 155, 446
AluBI	AGCT	3 cut(s)	227, 422, 450
AluI	AGCT	3 cut(s)	227, 422, 450
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	376
AoxI	GGCC	3 cut(s)	163, 211, 306
ApeKI	GCWGC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	3 cut(s)	92, 271, 299
BalI	TGGCCA	1 cut(s)	308
BanII	GRGCYC	2 cut(s)	37, 229
BbsI	GAAGAC	2 cut(s)	306, 326
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	258
BclI	TGATCA	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	138
BfmI	CTRYAG	2 cut(s)	100, 244
BfuAI	ACCTGC	1 cut(s)	58
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	459
BpiI	GAAGAC	2 cut(s)	306, 326
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	189
BseGI	GGATG	2 cut(s)	190, 193
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	242, 444
BseXI	GCAGC	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	3 cut(s)	165, 213, 308
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	166, 222
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	165, 213, 308
Bsp1286I	GDGCHC	2 cut(s)	37, 229
Bsp143I	GATC	2 cut(s)	368, 378
Bsp68I	TCGCGA	1 cut(s)	39
BspANI	GGCC	3 cut(s)	165, 213, 308
BspCNI	CTCAG	2 cut(s)	241, 445
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	459
BspMAI	CTGCAG	1 cut(s)	248
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssMI	GATC	2 cut(s)	368, 378
BstAPI	GCANNNNNTGC	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	37, 167, 408
BstDEI	CTNAG	2 cut(s)	228, 453
BstF5I	GGATG	2 cut(s)	190, 193
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	371, 381
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	368, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 252
BstSFI	CTRYAG	2 cut(s)	100, 244
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	258
BstV2I	GAAGAC	2 cut(s)	306, 326
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	3 cut(s)	165, 213, 308
BtsCI	GGATG	2 cut(s)	190, 193
BtuMI	TCGCGA	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	3 cut(s)	37, 167, 408
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	211
CviAII	CATG	1 cut(s)	338
DdeI	CTNAG	2 cut(s)	228, 453
DpnI	GATC	2 cut(s)	370, 380
DpnII	GATC	2 cut(s)	368, 378
DraIII	CACNNNGTG	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	2 cut(s)	37, 229
Eco53kI	GAGCTC	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	227
EcoT38I	GRGCYC	2 cut(s)	37, 229
FaeI	CATG	1 cut(s)	341
FatI	CATG	1 cut(s)	337
FauNDI	CATATG	1 cut(s)	363
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	2 cut(s)	180, 197
FriOI	GRGCYC	2 cut(s)	37, 229
Fsp4HI	GCNGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	247
HaeIII	GGCC	3 cut(s)	165, 213, 308
HapII	CCGG	2 cut(s)	166, 222
Hin1II	CATG	1 cut(s)	341
HpaII	CCGG	2 cut(s)	166, 222
HphI	GGTGA	3 cut(s)	92, 271, 299
Hpy188I	TCNGA	3 cut(s)	373, 393, 454
Hpy188III	TCNNGA	1 cut(s)	38
HpyCH4V	TGCA	5 cut(s)	4, 160, 246, 410, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 252
HpyF3I	CTNAG	2 cut(s)	228, 453
Hsp92II	CATG	1 cut(s)	341
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	2 cut(s)	368, 378
LmnI	GCTCC	2 cut(s)	224, 419
Lsp1109I	GCAGC	1 cut(s)	258
MalI	GATC	2 cut(s)	370, 380
MboI	GATC	2 cut(s)	368, 378
MboII	GAAGA	3 cut(s)	95, 306, 326
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	2 cut(s)	37, 229
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	2 cut(s)	155, 322
MluNI	TGGCCA	1 cut(s)	308
MnlI	CCTC	3 cut(s)	127, 292, 448
Mox20I	TGGCCA	1 cut(s)	308
MroNI	GCCGGC	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	2 cut(s)	166, 222
Mva1269I	GAATGC	1 cut(s)	106
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	166, 252
NaeI	GCCGGC	1 cut(s)	167
NdeI	CATATG	1 cut(s)	363
NdeII	GATC	2 cut(s)	368, 378
NgoMIV	GCCGGC	1 cut(s)	165
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	1 cut(s)	459
NruI	TCGCGA	1 cut(s)	39
PctI	GAATGC	1 cut(s)	106
PdiI	GCCGGC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	368
RruI	TCGCGA	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	229
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	2 cut(s)	368, 378
Sau96I	GGNCC	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	37, 229
SetI	ASST	7 cut(s)	64, 72, 119, 229, 234, 424, 452
SfcI	CTRYAG	2 cut(s)	100, 244
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	2 cut(s)	155, 322
SstI	GAGCTC	1 cut(s)	229
TaqI	TCGA	2 cut(s)	72, 317
TasI	AATT	2 cut(s)	155, 322
TseI	GCWGC	1 cut(s)	246
TspDTI	ATGAA	3 cut(s)	326, 335, 485
XapI	RAATTY	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.