Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000892

Physical Location & Seq

Genomic Coordinates Forward (+)

21880657 .. 21881988

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0224500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTCTGAGCGCCCAAAGAGTCTCAACGTCTGTTCCCTTATCTTTTTCATGCAAATTTGATGTGTTCTTGAGTTTCAGGGGGGAAACGTGCAAGACTTTTACAGAGCATTTATATAATGCATTGCAGAGGCGAGCAATCAAAGTCTTCTGGGACCTTCAACTTGAGAAAGGCACAACTATCTCTTCAGAGCTCATGACTGCCATTGAAGAATCAAGGTATGAAACCAAGTTTATCACAGAAATTGTAGAATCATTGTATAACAAACTGATGGTCAAGTTGAGTATATGGAACATCCATACTGGCGACAAAGATATTGCCCCTCCCAAGAAGGCGATGGGACTCGTAGGGAAGCTTCGCTGTAAAGTAAAAGAAACTATCCTCTGGTATGGCCTTCCTAGGATGTTGACATGGTCACTTCTAGCTCAACAGATGATAAGTGCATGGCTAAGGCTTAAAGGTTATCCCAACTTGTGCCCTGAGCTTGAAAAAGGTATCTGCCAATATTTGGCACATAGGTGGTTGGAGTATTCTAATTCTGATTCATCTAGAAAATTAGCTGAGGTTGAGCAGAAGCTTTTCATATTTAGGAAAGTAAAAATTGAGTCAGATTGTGGAGAAGCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0005975 GO:0005976 GO:0006073 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009825 GO:0009832 GO:0009833 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010330 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0022414 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051273 GO:0051274 GO:0051301 GO:0061458 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

209

Amino Acids

24.21

Weight (kDa)

9.07

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	19 - 73	7.7e-10	TIR domain
TIR_2	PF13676	22 - 74	6.9e-06	TIR domain
DA1-like	PF12315	120 - 186	8.9e-21	Protein DA1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21770 AT4G39350 AT5G09870 AT5G64740
fragaria_vesca	FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_5g26830 FvH4_5g26830 FvH4_5g26830
malus_domestica	MD00G1146900.v1.1 MD05G1029400.v1.1 MD10G1029800.v1.1 MD15G1340200.v1.1
prunus_persica	Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.8G035100_v2.0.a1
pyrus_communis	pycom01g03410 pycom01g03420 pycom01g03470 pycom05g02060 pycom05g02070 pycom15g29990
rosa_chinensis	RchiOBHm_Chr2g0119881 RchiOBHm_Chr6g0274931 RchiOBHm_Chr7g0217741
rosa_laevigata	RLG00000002442 RLG00000013507 RLG00000018496
rosa_multiflora	Rmu_sc0000202.1_g000022 Rmu_sc0001501.1_g000028 Rmu_sc0007760.1_g000002
rosa_roxburghii	Rroxscaffold_2G00124010 Rroxscaffold_3G00241720 Rroxscaffold_7G00193790
rosa_rugosa	Rorug02G0224300 Rorug02G0224400 Rorug02G0224500 Rorug06G0086400 Rorug06G0086500 Rorug07G0170900.1
rosa_samantha	Rh2AG282100 Rh2BG293400 Rh2DG288300 Rh2DG307400 Rh6AG201300 Rh6BG204900 Rh6CG206300 Rh6DG196400 Rh7AG311600 Rh7BG303500 Rh7CG330400
rosa_wichuraiana	Rw2G022520 Rw6G017510 Rw7G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	508
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	508
AgsI	TTSAA	3 cut(s)	161, 209, 488
AleI	CACNNNNGTG	1 cut(s)	517
AluBI	AGCT	6 cut(s)	193, 355, 425, 484, 560, 577
AluI	AGCT	6 cut(s)	193, 355, 425, 484, 560, 577
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	28
AoxI	GGCC	1 cut(s)	391
ApoI	RAATTY	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
Asp700I	GAANNNNTTC	1 cut(s)	578
AspA2I	CCTAGG	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	154
AvrII	CCTAGG	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	339, 371
BbsI	GAAGAC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	195
BbvCI	CCTCAGC	1 cut(s)	561
BccI	CCATC	2 cut(s)	265, 331
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	3 cut(s)	399, 422, 549
BfoI	RGCGCY	1 cut(s)	15
BlnI	CCTAGG	1 cut(s)	398
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	139
Bpu10I	CCTNAGC	3 cut(s)	449, 480, 561
BpuEI	CTTGAG	2 cut(s)	91, 185
BsaJI	CCNNGG	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	294, 408
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	2 cut(s)	471, 552
BseNI	ACTGG	1 cut(s)	307
BseSI	GKGCMC	1 cut(s)	479
BshFI	GGCC	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	167, 354
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	2 cut(s)	167, 354
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	1 cut(s)	393
Bsp1286I	GDGCHC	2 cut(s)	195, 479
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	2 cut(s)	472, 553
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	398
BssT1I	CCWWGG	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	4 cut(s)	8, 449, 480, 561
BstF5I	GGATG	2 cut(s)	294, 408
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSLI	GKGCMC	1 cut(s)	479
BstV2I	GAAGAC	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	393
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	294, 408
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	195
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	154
CviAII	CATG	4 cut(s)	51, 196, 411, 444
DdeI	CTNAG	4 cut(s)	8, 449, 480, 561
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	4 cut(s)	54, 199, 414, 447
FaqI	GGGAC	2 cut(s)	167, 354
FatI	CATG	4 cut(s)	50, 195, 410, 443
FokI	GGATG	2 cut(s)	281, 415
FriOI	GRGCYC	1 cut(s)	195
FspBI	CTAG	3 cut(s)	399, 422, 549
GlaI	GCGC	1 cut(s)	13
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	393
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	4 cut(s)	54, 199, 414, 447
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HindIII	AAGCTT	2 cut(s)	353, 575
HinfI	GANTC	6 cut(s)	21, 212, 251, 342, 542, 605
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	5 cut(s)	9, 190, 541, 610, 629
Hpy188III	TCNNGA	3 cut(s)	70, 196, 549
Hpy8I	GTNNAC	1 cut(s)	408
HpyAV	CCTTC	3 cut(s)	167, 325, 404
HpyCH4IV	ACGT	2 cut(s)	29, 89
HpyCH4V	TGCA	5 cut(s)	54, 93, 122, 127, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	8, 449, 480, 561
HpySE526I	ACGT	2 cut(s)	29, 89
Hsp92II	CATG	4 cut(s)	54, 199, 414, 447
HspAI	GCGC	1 cut(s)	12
LpnPI	CCDG	5 cut(s)	64, 136, 288, 370, 492
MaeI	CTAG	3 cut(s)	399, 422, 549
MaeII	ACGT	2 cut(s)	29, 89
MaeIII	GTNAC	1 cut(s)	414
MboII	GAAGA	3 cut(s)	139, 177, 221
MhlI	GDGCHC	2 cut(s)	195, 479
MluCI	AATT	5 cut(s)	56, 243, 535, 554, 600
MlyI	GAGTC	3 cut(s)	30, 336, 614
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	4 cut(s)	123, 333, 392, 556
Mph1103I	ATGCAT	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	578
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	517
Mva1269I	GAATGC	1 cut(s)	623
MwoI	GCNNNNNNNGC	1 cut(s)	11
NlaIII	CATG	4 cut(s)	54, 199, 414, 447
NlaIV	GGNNCC	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	414
NsiI	ATGCAT	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	517
PagI	TCATGA	1 cut(s)	195
PctI	GAATGC	1 cut(s)	623
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	3 cut(s)	212, 251, 542
PflFI	GACNNNGTC	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	508
PleI	GAGTC	3 cut(s)	29, 336, 613
PpsI	GAGTC	3 cut(s)	29, 336, 613
PpuMI	RGGWCCY	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
PsyI	GACNNNGTC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	517
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	456
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	3 cut(s)	30, 336, 614
SduI	GDGCHC	2 cut(s)	195, 479
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	517
SmlI	CTYRAG	2 cut(s)	70, 164
SmoI	CTYRAG	2 cut(s)	70, 164
Sse9I	AATT	5 cut(s)	56, 243, 535, 554, 600
SspI	AATATT	1 cut(s)	506
SspMI	CTAG	3 cut(s)	399, 422, 549
SstI	GAGCTC	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	398
TaiI	ACGT	2 cut(s)	32, 92
TasI	AATT	5 cut(s)	56, 243, 535, 554, 600
TfiI	GAWTC	3 cut(s)	212, 251, 542
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	414
Tsp45I	GTSAC	1 cut(s)	414
TspDTI	ATGAA	4 cut(s)	39, 237, 534, 571
Tth111I	GACNNNGTC	1 cut(s)	412
Van91I	CCANNNNNTGG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	56
XbaI	TCTAGA	1 cut(s)	548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmaJI	CCTAGG	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	3 cut(s)	399, 422, 549
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.