Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000892

Physical Location & Seq

Genomic Coordinates Forward (+)

11592262 .. 11593373

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0086400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCAAAACTCCTTCAACCGATCCAAACTCGACACCGCCGGAGATCCACAACAGTTGACCCAAAACCCACTTCCTCCTCCGCCGCCTCGCCGCCTCACCCAAGAGCAAGAACTCGCCGTAATCGTCTCCGCTCTTCGAAACGTCGTCGCCGGCACCACCACCACCATGGACTTCAACTCTCTCTTCCCTTCCTACCATTACCCCGCCGCCGCTTCCTCCTCCTCCTCTCCCGCCCTATTCGAAGCGTCTGATGCCGACACGTGTCCGGTTTGTAAAATTCAAGGCTGCCTTGGATGCAATTTTTTCCCGCCAGCACAGGAGGAGAACAGCAACAGCAAGAAGAAGGCACCCAAGAAGAGGCTGAAGAAGAACTACAGGGGAGTGAGGCAGCGGCCTTGGGGCAAATGGGCCGCTGAAATCCGAGACCCGAGGAGGGCCACTCGGGTCTGGCTGGGCACGTTCCACACTGCCGAGGAGGCGGCCCGTGCCTACGACAAGGCCGCGATTGAGTTTCGCGGTCCCAGAGCGAAACTCAATTTCCCGTTTCCGGATAACTCATTGTCGATGAACCAAGAAACTTCGACACCGCCCACACAGCCCATTCAAGAACCCCAGAAGCAGCAGATAGTTGTTACAGATACTAAGCAAGAGAACAAGAGCGAGGATTCAAATGAAATGGAATGTGAGTTCTGGGAAAGGATCGGGGATGACGAGCTCTTTCAACAGTGGATGATGACGATGGACTACGCACCTGATCATTCGTCGGATTCTGGGAATGGGTCTGCCGGAAATGCTCATAGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0005975 GO:0005976 GO:0006073 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009825 GO:0009832 GO:0009833 GO:0009987 GO:0010330 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031224 GO:0031226 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

268

Amino Acids

30.06

Weight (kDa)

6.14

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	124 - 173	3.4e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21770 AT4G39350 AT5G09870 AT5G64740
fragaria_vesca	FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_5g26830 FvH4_5g26830 FvH4_5g26830
malus_domestica	MD00G1146900.v1.1 MD05G1029400.v1.1 MD10G1029800.v1.1 MD15G1340200.v1.1
prunus_persica	Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.8G035100_v2.0.a1
pyrus_communis	pycom01g03410 pycom01g03420 pycom01g03470 pycom05g02060 pycom05g02070 pycom15g29990
rosa_chinensis	RchiOBHm_Chr2g0119881 RchiOBHm_Chr6g0274931 RchiOBHm_Chr7g0217741
rosa_laevigata	RLG00000002442 RLG00000013507 RLG00000018496
rosa_multiflora	Rmu_sc0000202.1_g000022 Rmu_sc0001501.1_g000028 Rmu_sc0007760.1_g000002
rosa_roxburghii	Rroxscaffold_2G00124010 Rroxscaffold_3G00241720 Rroxscaffold_7G00193790
rosa_rugosa	Rorug02G0224300 Rorug02G0224400 Rorug02G0224500 Rorug06G0086400 Rorug06G0086500 Rorug07G0170900.1
rosa_samantha	Rh2AG282100 Rh2BG293400 Rh2DG288300 Rh2DG307400 Rh6AG201300 Rh6BG204900 Rh6CG206300 Rh6DG196400 Rh7AG311600 Rh7BG303500 Rh7CG330400
rosa_wichuraiana	Rw2G022520 Rw6G017510 Rw7G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	152, 346
AccBSI	CCGCTC	1 cut(s)	131
AccII	CGCG	2 cut(s)	503, 516
AccIII	TCCGGA	1 cut(s)	547
AclWI	GGATC	3 cut(s)	15, 38, 707
AcsI	RAATTY	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	383
AcvI	CACGTG	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	357, 433, 547
AflIII	ACRYGT	2 cut(s)	258, 260
AgsI	TTSAA	6 cut(s)	16, 175, 281, 605, 669, 722
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AloI	GAACNNNNNNTCC	2 cut(s)	671, 703
AluBI	AGCT	1 cut(s)	715
AluI	AGCT	1 cut(s)	715
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	2 cut(s)	130, 417
AlwI	GGATC	3 cut(s)	15, 38, 707
Ama87I	CYCGRG	2 cut(s)	427, 441
Aor13HI	TCCGGA	1 cut(s)	547
AoxI	GGCC	5 cut(s)	392, 408, 435, 480, 498
ApeKI	GCWGC	3 cut(s)	285, 388, 619
ApoI	RAATTY	1 cut(s)	276
AspS9I	GGNCC	4 cut(s)	408, 435, 481, 518
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	2 cut(s)	136, 240
AvaI	CYCGRG	2 cut(s)	427, 441
AvaII	GGWCC	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	458
BanI	GGYRCC	2 cut(s)	152, 346
BanII	GRGCYC	1 cut(s)	717
BarI	GAAGNNNNNNTAC	2 cut(s)	356, 388
BbrPI	CACGTG	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	3 cut(s)	272, 400, 631
BccI	CCATC	1 cut(s)	733
BceAI	ACGGC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	2 cut(s)	130, 417
BfmI	CTRYAG	1 cut(s)	373
BglI	GCCNNNNNGGC	1 cut(s)	476
Bme18I	GGWCC	1 cut(s)	518
BmeT110I	CYCGRG	2 cut(s)	427, 441
BmgT120I	GGNCC	4 cut(s)	408, 435, 481, 518
BmiI	GGNNCC	3 cut(s)	154, 348, 520
BmsI	GCATC	2 cut(s)	241, 284
BoxI	GACNNNNGTC	1 cut(s)	261
BplI	GAGNNNNNCTC	4 cut(s)	424, 456, 516, 548
Bpu14I	TTCGAA	2 cut(s)	136, 240
BsaAI	YACGTR	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	417
BsaJI	CCNNGG	5 cut(s)	165, 289, 395, 428, 471
BsaWI	WCCGGW	2 cut(s)	265, 547
Bsc4I	CCNNNNNNNGG	3 cut(s)	357, 433, 547
Bse118I	RCCGGY	1 cut(s)	149
BseAI	TCCGGA	1 cut(s)	547
BseDI	CCNNGG	5 cut(s)	165, 289, 395, 428, 471
BseGI	GGATG	3 cut(s)	299, 712, 735
BseLI	CCNNNNNNNGG	3 cut(s)	357, 433, 547
BseRI	GAGGAG	7 cut(s)	66, 208, 211, 214, 335, 445, 488
BseSI	GKGCMC	1 cut(s)	458
BseXI	GCAGC	3 cut(s)	272, 400, 631
BseYI	CCCAGC	1 cut(s)	451
Bsh1236I	CGCG	2 cut(s)	503, 516
BshFI	GGCC	5 cut(s)	394, 410, 437, 482, 500
BshNI	GGYRCC	2 cut(s)	152, 346
BsiHKAI	GWGCWC	1 cut(s)	717
BsiHKCI	CYCGRG	2 cut(s)	427, 441
BsiSI	CCGG	5 cut(s)	39, 150, 266, 548, 786
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	3 cut(s)	357, 433, 547
BsmAI	GTCTC	2 cut(s)	130, 417
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	5 cut(s)	394, 410, 437, 482, 500
Bso31I	GGTCTC	1 cut(s)	417
BsoBI	CYCGRG	2 cut(s)	427, 441
Bsp119I	TTCGAA	2 cut(s)	136, 240
Bsp1286I	GDGCHC	2 cut(s)	458, 717
Bsp13I	TCCGGA	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	20, 43, 699, 754
Bsp19I	CCATGG	1 cut(s)	165
BspANI	GGCC	5 cut(s)	394, 410, 437, 482, 500
BspEI	TCCGGA	1 cut(s)	547
BspFNI	CGCG	2 cut(s)	503, 516
BspLI	GGNNCC	3 cut(s)	154, 348, 520
BspPI	GGATC	3 cut(s)	15, 38, 707
BspQI	GCTCTTC	1 cut(s)	138
BspT104I	TTCGAA	2 cut(s)	136, 240
BspT107I	GGYRCC	2 cut(s)	152, 346
BspTNI	GGTCTC	1 cut(s)	417
BsrBI	CCGCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	5 cut(s)	165, 289, 395, 428, 471
BssMI	GATC	4 cut(s)	20, 43, 699, 754
BssT1I	CCWWGG	3 cut(s)	165, 289, 395
Bst4CI	ACNGT	2 cut(s)	54, 726
Bst6I	CTCTTC	3 cut(s)	138, 188, 350
BstBAI	YACGTR	1 cut(s)	261
BstBI	TTCGAA	2 cut(s)	136, 240
BstC8I	GCNNGC	2 cut(s)	151, 312
BstDEI	CTNAG	1 cut(s)	642
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	299, 712, 735
BstFNI	CGCG	2 cut(s)	503, 516
BstKTI	GATC	4 cut(s)	23, 46, 702, 757
BstMAI	GTCTC	2 cut(s)	130, 417
BstMBI	GATC	4 cut(s)	20, 43, 699, 754
BstMWI	GCNNNNNNNGC	6 cut(s)	251, 294, 476, 485, 595, 791
BstPAI	GACNNNNGTC	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	373
BstSLI	GKGCMC	1 cut(s)	458
BstUI	CGCG	2 cut(s)	503, 516
BstV1I	GCAGC	3 cut(s)	272, 400, 631
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	5 cut(s)	394, 410, 437, 482, 500
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	299, 712, 735
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	2 cut(s)	465, 731
Cac8I	GCNNGC	2 cut(s)	151, 312
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	4 cut(s)	408, 435, 481, 518
CseI	GACGC	1 cut(s)	234
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	642
DpnI	GATC	4 cut(s)	22, 45, 701, 756
DpnII	GATC	4 cut(s)	20, 43, 699, 754
Eam1104I	CTCTTC	3 cut(s)	138, 188, 350
EarI	CTCTTC	3 cut(s)	138, 188, 350
EciI	GGCGGA	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	715
Eco130I	CCWWGG	3 cut(s)	165, 289, 395
Eco24I	GRGCYC	1 cut(s)	717
Eco31I	GGTCTC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	383
Eco72I	CACGTG	1 cut(s)	261
Eco88I	CYCGRG	2 cut(s)	427, 441
EcoICRI	GAGCTC	1 cut(s)	715
EcoT14I	CCWWGG	3 cut(s)	165, 289, 395
EcoT38I	GRGCYC	1 cut(s)	717
ErhI	CCWWGG	3 cut(s)	165, 289, 395
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	1 cut(s)	169
FaiI	YATR	2 cut(s)	167, 798
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	1 cut(s)	165
FauI	CCCGC	3 cut(s)	211, 238, 315
FbaI	TGATCA	1 cut(s)	754
FokI	GGATG	3 cut(s)	306, 719, 742
FriOI	GRGCYC	1 cut(s)	717
GsaI	CCCAGC	1 cut(s)	455
HaeIII	GGCC	5 cut(s)	394, 410, 437, 482, 500
HapII	CCGG	5 cut(s)	39, 150, 266, 548, 786
HgaI	GACGC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	665, 767
HpaII	CCGG	5 cut(s)	39, 150, 266, 548, 786
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	250, 422, 766
Hpy188III	TCNNGA	2 cut(s)	548, 605
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	3 cut(s)	146, 149, 766
HpyAV	CCTTC	3 cut(s)	22, 198, 337
HpyCH4III	ACNGT	2 cut(s)	54, 726
HpyCH4IV	ACGT	3 cut(s)	141, 260, 458
HpyCH4V	TGCA	2 cut(s)	4, 297
HpyF10VI	GCNNNNNNNGC	6 cut(s)	251, 294, 476, 485, 595, 791
HpyF3I	CTNAG	1 cut(s)	642
HpySE526I	ACGT	3 cut(s)	141, 260, 458
Hsp92II	CATG	1 cut(s)	169
Kpn2I	TCCGGA	1 cut(s)	547
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	4 cut(s)	20, 43, 699, 754
LguI	GCTCTTC	1 cut(s)	138
Lsp1109I	GCAGC	3 cut(s)	272, 400, 631
LweI	GCATC	2 cut(s)	241, 284
MaeII	ACGT	3 cut(s)	141, 260, 458
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	4 cut(s)	22, 45, 701, 756
MbiI	CCGCTC	1 cut(s)	131
MboI	GATC	4 cut(s)	20, 43, 699, 754
MboII	GAAGA	6 cut(s)	125, 175, 352, 367, 376, 379
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	458, 717
MluCI	AATT	3 cut(s)	276, 298, 535
MmeI	TCCRAC	1 cut(s)	744
MroI	TCCGGA	1 cut(s)	547
MroNI	GCCGGC	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	2 cut(s)	391, 413
MspI	CCGG	5 cut(s)	39, 150, 266, 548, 786
MvnI	CGCG	2 cut(s)	503, 516
MwoI	GCNNNNNNNGC	6 cut(s)	251, 294, 476, 485, 595, 791
NaeI	GCCGGC	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	4 cut(s)	20, 43, 699, 754
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	3 cut(s)	154, 348, 520
NmeAIII	GCCGAG	1 cut(s)	496
NspV	TTCGAA	2 cut(s)	136, 240
PciSI	GCTCTTC	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 708
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	665, 767
PmaCI	CACGTG	1 cut(s)	261
PmlI	CACGTG	1 cut(s)	261
Ppu21I	YACGTR	1 cut(s)	261
PshAI	GACNNNNGTC	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	717
PspCI	CACGTG	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	451
PspN4I	GGNNCC	3 cut(s)	154, 348, 520
PspPI	GGNCC	4 cut(s)	408, 435, 481, 518
PsuI	RGATCY	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	717
SapI	GCTCTTC	1 cut(s)	138
Sau3AI	GATC	4 cut(s)	20, 43, 699, 754
Sau96I	GGNCC	4 cut(s)	408, 435, 481, 518
SduI	GDGCHC	2 cut(s)	458, 717
SetI	ASST	5 cut(s)	144, 263, 461, 717, 754
SfaNI	GCATC	2 cut(s)	241, 284
SfcI	CTRYAG	1 cut(s)	373
SfuI	TTCGAA	2 cut(s)	136, 240
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	3 cut(s)	276, 298, 535
SstI	GAGCTC	1 cut(s)	717
StyI	CCWWGG	3 cut(s)	165, 289, 395
TaaI	ACNGT	2 cut(s)	54, 726
TaiI	ACGT	3 cut(s)	144, 263, 461
TaqI	TCGA	5 cut(s)	30, 136, 240, 563, 581
TasI	AATT	3 cut(s)	276, 298, 535
TauI	GCSGC	8 cut(s)	85, 93, 209, 212, 394, 413, 482, 503
TfiI	GAWTC	2 cut(s)	665, 767
TscAI	CASTG	2 cut(s)	472, 731
TseI	GCWGC	3 cut(s)	285, 388, 619
TspDTI	ATGAA	2 cut(s)	581, 687
TspRI	CASTG	2 cut(s)	472, 731
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	1 cut(s)	276
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.