pycom01g03420

Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
2624248 .. 2624810
563 bp
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UTR
Exon/CDS
Intron
pycom01g03420.2

Sequence Viewer

Length: 273 bp
ATGGAAGAGTGGAACAAAAAGCAGAATGAAAAACTTCAGGTTGTAAAGCATGAAGGAGTTAGCGATGGAGGGATCTTTGGTGGGAATGATGAGCTGGATGATCCTGATTTACCCATGATGGATGAAGGCAGGCAGCCACTTTCAAGAAAGTTACCTAAGCAAGATAAACCCATACAGAATGATAATAATATAGAAACTGGAAACTTCCTATGTAAGCTTTCCAATTGTATTTCTGAATTTTTTATTTTGTACATTGTGAAGACATATATATAG

Protein Analysis

91

Amino Acids

10.36

Weight (kDa)

4.75

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 80, 95
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 20
AfaI GTAC 1 cut(s) 251
AgsI TTSAA 1 cut(s) 144
AluBI AGCT 2 cut(s) 94, 217
AluI AGCT 2 cut(s) 94, 217
AlwI GGATC 2 cut(s) 80, 95
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 145
BccI CCATC 2 cut(s) 59, 112
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 266
Bpu10I CCTNAGC 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 202
BseGI GGATG 2 cut(s) 103, 127
BseNI ACTGG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 145
Bsp1407I TGTACA 1 cut(s) 249
Bsp143I GATC 2 cut(s) 72, 100
BspPI GGATC 2 cut(s) 80, 95
BsrGI TGTACA 1 cut(s) 249
BsrI ACTGG 1 cut(s) 202
BssMI GATC 2 cut(s) 72, 100
BstAUI TGTACA 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 2 cut(s) 103, 127
BstKTI GATC 2 cut(s) 75, 103
BstMBI GATC 2 cut(s) 72, 100
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 78
BtsCI GGATG 2 cut(s) 103, 127
Cac8I GCNNGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 250
CviAII CATG 2 cut(s) 50, 115
CviJI RGCY 3 cut(s) 94, 136, 217
CviKI_1 RGCY 3 cut(s) 94, 136, 217
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 156
DpnI GATC 2 cut(s) 74, 102
DpnII GATC 2 cut(s) 72, 100
Eco57I CTGAAG 1 cut(s) 20
FaeI CATG 2 cut(s) 53, 118
FaiI YATR 9 cut(s) 51, 116, 173, 191, 211, 265, 267, 269, 271
FatI CATG 2 cut(s) 49, 114
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 2 cut(s) 110, 134
Fsp4HI GCNGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 134
Hin1II CATG 2 cut(s) 53, 118
HindIII AAGCTT 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 104, 144
HpyAV CCTTC 2 cut(s) 47, 119
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 2 cut(s) 53, 118
Kzo9I GATC 2 cut(s) 72, 100
LpnPI CCDG 5 cut(s) 23, 80, 115, 117, 183
Lsp1109I GCAGC 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 150
MalI GATC 2 cut(s) 74, 102
MboI GATC 2 cut(s) 72, 100
MboII GAAGA 2 cut(s) 17, 271
MfeI CAATTG 1 cut(s) 223
MflI RGATCY 1 cut(s) 72
MluCI AATT 2 cut(s) 223, 236
MnlI CCTC 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 33
MunI CAATTG 1 cut(s) 223
NdeII GATC 2 cut(s) 72, 100
NlaIII CATG 2 cut(s) 53, 118
PdmI GAANNNNTTC 1 cut(s) 33
PkrI GCNGC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 72
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 2 cut(s) 72, 100
SetI ASST 4 cut(s) 42, 96, 157, 219
SgeI CNNG 9 cut(s) 50, 62, 107, 116, 127, 142, 156, 173, 210
Sse9I AATT 2 cut(s) 223, 236
TasI AATT 2 cut(s) 223, 236
TatI WGTACW 1 cut(s) 249
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 42, 66, 138
XapI RAATTY 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.