Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000892

Physical Location & Seq

Genomic Coordinates Forward (+)

2645700 .. 2645975

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g03470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCTCTCTTCATATACATAGCTGCAACTGGTATCCTTGAGATGCAATGGGGCGGCGTCGGGATAGATGACTGGTGGAGAAATGAGCAGTTCTGGGTAATTGTAGGCGCTTCATTACATCTTTTTGCTCTCTTCCAGGGTCCCGTACTCAAGGTTTTGGCTGGTGTTGACACAGACTTCACAGTTACATCAAAGGCAGCAGATGATGGAGCATCTTCCGAACTTTACATCTTCAAGTGGACATCATTATTGATCCGTCCTACAACTTTATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0005975 GO:0005976 GO:0006073 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009825 GO:0009832 GO:0009833 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010330 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0022414 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051273 GO:0051274 GO:0051301 GO:0061458 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

92

Amino Acids

10.11

Weight (kDa)

4.51

Isoelectric Point (pI)

4.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	1 - 91	8.1e-39	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21770 AT4G39350 AT5G09870 AT5G64740
fragaria_vesca	FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_5g26830 FvH4_5g26830 FvH4_5g26830
malus_domestica	MD00G1146900.v1.1 MD05G1029400.v1.1 MD10G1029800.v1.1 MD15G1340200.v1.1
prunus_persica	Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.8G035100_v2.0.a1
pyrus_communis	pycom01g03410 pycom01g03420 pycom01g03470 pycom05g02060 pycom05g02070 pycom15g29990
rosa_chinensis	RchiOBHm_Chr2g0119881 RchiOBHm_Chr6g0274931 RchiOBHm_Chr7g0217741
rosa_laevigata	RLG00000002442 RLG00000013507 RLG00000018496
rosa_multiflora	Rmu_sc0000202.1_g000022 Rmu_sc0001501.1_g000028 Rmu_sc0007760.1_g000002
rosa_roxburghii	Rroxscaffold_2G00124010 Rroxscaffold_3G00241720 Rroxscaffold_7G00193790
rosa_rugosa	Rorug02G0224300 Rorug02G0224400 Rorug02G0224500 Rorug06G0086400 Rorug06G0086500 Rorug07G0170900.1
rosa_samantha	Rh2AG282100 Rh2BG293400 Rh2DG288300 Rh2DG307400 Rh6AG201300 Rh6BG204900 Rh6CG206300 Rh6DG196400 Rh7AG311600 Rh7BG303500 Rh7CG330400
rosa_wichuraiana	Rw2G022520 Rw6G017510 Rw7G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	274
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
AlwI	GGATC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	23, 197
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	10, 209
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	44
BfoI	RGCGCY	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	44
BisI	GCNGC	3 cut(s)	24, 55, 198
BlsI	GCNGC	3 cut(s)	25, 56, 199
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	141, 142
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	2 cut(s)	33, 221
BpuEI	CTTGAG	2 cut(s)	59, 134
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	34, 77
Bse3DI	GCAATG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	53
BseNI	ACTGG	2 cut(s)	34, 77
BseXI	GCAGC	2 cut(s)	10, 209
BslFI	GGGAC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	141, 142
BspPI	GGATC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	34, 77
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	252
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	14, 137
BstACI	GRCGYC	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	10, 209
BsuI	GTATCC	1 cut(s)	44
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	140
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	146
CviJI	RGCY	3 cut(s)	5, 23, 161
CviKI_1	RGCY	3 cut(s)	5, 23, 161
CviQI	GTAC	1 cut(s)	146
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	14, 137
EarI	CTCTTC	2 cut(s)	14, 137
Eco47I	GGWCC	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	135
FaiI	YATR	4 cut(s)	14, 16, 20, 274
FaqI	GGGAC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	24, 55, 198
Fsp4HI	GCNGC	3 cut(s)	24, 55, 198
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	3 cut(s)	24, 55, 198
HaeII	RGCGCY	1 cut(s)	111
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	57
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	169, 240
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	2 cut(s)	169, 240
Hpy99I	CGWCG	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	26, 46
Hsp92I	GRCGYC	1 cut(s)	57
HspAI	GCGC	1 cut(s)	108
KflI	GGGWCCC	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	6 cut(s)	15, 58, 79, 122, 147, 149
Lsp1109I	GCAGC	2 cut(s)	10, 209
LweI	GCATC	2 cut(s)	33, 221
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	3 cut(s)	124, 207, 223
MluCI	AATT	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	252
NlaIV	GGNNCC	2 cut(s)	141, 142
PkrI	GCNGC	3 cut(s)	25, 56, 199
PpuMI	RGGWCCY	1 cut(s)	140
PsiI	TTATAA	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	141, 142
PspPI	GGNCC	1 cut(s)	140
PspPPI	RGGWCCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SatI	GCNGC	3 cut(s)	24, 55, 198
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	2 cut(s)	25, 156
SfaNI	GCATC	2 cut(s)	33, 221
SinI	GGWCC	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	38, 149
SmoI	CTYRAG	2 cut(s)	38, 149
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	1 cut(s)	99
TauI	GCSGC	1 cut(s)	57
TseI	GCWGC	2 cut(s)	23, 197
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.