Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000892

Physical Location & Seq

Genomic Coordinates Forward (+)

36421585 .. 36428934

Gene Structure 7350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG330400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3285 bp

ATGGACTCCAACGCTGGTCTGGTGGCCGGCTCTCACAACCGGAATGAGCTCGTCGTCATCCGCCGCGAGCGCGACGGAGATTCTGCTCCGAAAGGGTTGAAGGGGCAGATTTGCCAGATTTGTGGAGACGACGTGGGGCTCAACGCCGACGGGGAATTGTTCGTCGCCTGTAACGAGTGTGCCTTCCCAGTTTGCCGGACTTGCTACGAGTATGAGCGCCGAGAAGGAAGCCAAGTCTGTCCTCAGTGCAAGACCCGATTCAAACGTCTCAAAGGGTGTGCGAGGGTGGCCGGTGATGAAGAAGAAGACGGGGTGGATGATTTGGAGAACGAATTCAGTTTCGATGGGAGGAACCGACACGATTTGCAGCATGCGCTTTCCGCCGATGCAATGCTCCATGGCCACATGAGCTACGGCCGCGCCTCCTCGGTCTCCTCCGATTTCCATAATGATCTTCATTCCATTCCTCATCTTCCTCTCCTTACTAATGGTCAAATGGTTGATGATATCCCTCCTGAACAACATGCTCTGGTTCCTTCTTTCATGGGAGCCAACTCCGGAGGCAAAAGGATCCACCCCCTTCCTTTCTCAGATCCTGCCTTTCCAGTGCAACCCCGATCCATGGATCCTTCCAAAGACCTTGCTGCTTACGGCTATGGTAGTGTTGCTTGGAAGGAAAGGATGGAAAGTTGGAAACAAAAGCAGGAGAAACTACAGATGATGAAACATGAAAATGGTGGCAAAGATTACGACTATGATGGAAATGGCCCTGATCTACCTTTAATGGACGAGGCAAGACAGCCCTTGTCAAGAAAGTTGCCAATTTCATCGAGCCAAATCAACCCTTACCGAATGATCATCATAATTCGACTTGTTGCTCTTGGGTTCTTCTTTCATTATCGGATCCTGAATCCTGTGAATGATGCATATCCACTGTGGCTTATCTCAGTTATTTGTGAGATTTGGTTTGGTGTTTCCTGGATTCTTGATCAGTTTCCCAAGTGGCTTCCCATTGACAGGGAAACTTATCTCGACAGATTGTCTCTGAGGTATGAGAAGGAGGGTCAGCCTTCACAACTTTCTCCAGTTGATATTTTTGTCAGTACAGTGGATCCATTAAAAGAGCCTCCTCTGGTGACTGCAAACACTGTTCTTTCCATTCTTGCAGTGGACTACCCAGTTGACAAGGTCTCATGTTATGTTTCGGATGATGGTGCTGCTATGCTGACATTTGAGGCACTATCAGAAACATCTGAATTTGCTAAGAAGTGGGTCCCTTTCTGTAAGAAGTTTAACATAGAACCACGAGCACCTGAATTTTATTTTGCGCAGAAGATAGATTATCTTAGAGATAAGGTACTCCCTTCATTTGTGAAGGACAGGAGAGCAATGAAGAGAGAATACGAAGAGTTTAAAGTTCGAATTAATGCTTTGGTTGCTAAAGCTACAAAGGTGCCAGAAGAAGGGTGGACAATGCAGGATGGAACCCCGTGGCCTGGAAATAGTGTTCGTGATCATCCTGGGATGATTCAGGTTTTTCTTGGCCAAAGTGGAGGGCTTGACACAGATGGGAATGAATTACCGCGCCTGGTATATGTTTCGAGAGAAAAGAGACCTGGGTTTACTCATCACAAAAAGGCTGGAGCTATGAATGCCTTGGTCCGAGTCTCTGCTGTGCTCACAAATGCACCTTACATGTTGAATTTGGATTGTGATCACTACATCAACAATAGTAAGGCTATTAGAGAGTCAATGTGTTTCATGATGGATCCGTTGCAAGGAAAGAGAGTGTGCTATGTCCAGTTTCCTCAGAGGTTTGATGGTATTGACAAGCATGATCGATATGCCAACAGAAATACTGTGTTCTTTGACATTAACATGAAAGGTTTGGATGGGATCCAAGGACCTATATATGTCGGAACTGGTTGTGTCTTCAGAAGGCAGGCTCTCTATGGCTTTGATGCTCCAAAAGTAAAGAAGCCACCAACCAGGACATGCAACTGCTTGCCATCATGGTGCTGTTGCCTTTGTTCAGGAAAAAGGAAGAAGAAGAAGGCCAACAAACCTAAAACTGATTTGAAGAAGAGAAATTCCAGAAAGGGAGATCCAGCCCCTGTGCTTGCTCTGGAGGGAATCGAAGAGGGCATTGAAGGTGTTGAAACTGAAAATTTGGCTCTGATGCCTGAGCACAAGTTGGAAAAGAAGTTTGGGCAGTCTCCTGTGTTTGTTGCATCCACCTTGCTAGAGGATGGAGGTTCACTGAAAAGCACTAGCCCTGCATCTCTGCTAAAAGAAGCTATTCATGTCATTAGCTGTGGCTATGAAGATAAAACAGAGTGGGGAAAAGAGGTTGGCTGGATTTATGGCTCAGTTACAGAGGATATTCTGACAGGCTTTAAGATGCATTGCCATGGGTGGAGATCCATATACTGTATCCCTGACAGACCTGCATTTAAAGGATCTGCCCCCATTAACCTTTCTGATCGTTTGCACCAAGTCCTTCGATGGGCCCTTGGGTCAATTGAAATATTTTTGAGCAGGCATTGCCCTCTTTGGTATGGGTATGGTGGGGGTCTAAAGTGGCTGGAGCGTTTGTCTTACATAAATGCTACAGTGTACCCATGGACATCGATTCCACTTCTTGCCTATTGTACTCTACCTGCTGTATGTTTGCTAACAGGCAAATTTATCACTCCGGAGATGACCAATATTGCTAGCTTGTGGTTTCTGTCTCTTTTCATCACTATTTTCGCAACGGGCATATTGGAAATGAGATGGAGTAATGTTGGCATTGATGAATGGTGGAGAAATGAGCAGTTTTGGGTGATCGGAGGAGTGTCAGCTCATTTATTTGCGGTGTTTCAGGGGCTTCTAAAGGTTTTAGCTGGTGTTGATACAAACTTTACTGTGACATCAAAGGGAGGAGATGATGCAGAGTTTGCAGAACTTTACGCATTTAAATGGACGACATTGCTCATCCCACCAACAACTCTGCTCATAATAAACATCGTTGGAGTGGTTGCCGGAATCTCAAATGCAATAAATAATGGCTATGAGTCATGGGGGCCTCTGTTTGGTAAGCTCTTCTTTGCCTTCTGGGTGATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGCTTGGTAGGCAGAACAGGACTCCTACCATCATTATTGTGTGGTCAATATTGCTGGCTTCCATCTTCTCCCTTTTATGGGTCAGAATTGATCCATTCTTGGCCAAGTCGGATGGCCCTGTCCTGGAGGAATGTGGATTGGATTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

1094

Amino Acids

123.09

Weight (kDa)

6.8

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	31 - 104	4.5e-40	Zinc-binding RING-finger
zf-RING_4	PF14570	38 - 88	9.7e-06	RING/Ubox like zinc-binding domain
Cellulose_synt	PF03552	363 - 1086	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	783 - 889	8.3e-07	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21770 AT4G39350 AT5G09870 AT5G64740
fragaria_vesca	FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_5g26830 FvH4_5g26830 FvH4_5g26830
malus_domestica	MD00G1146900.v1.1 MD05G1029400.v1.1 MD10G1029800.v1.1 MD15G1340200.v1.1
prunus_persica	Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.8G035100_v2.0.a1
pyrus_communis	pycom01g03410 pycom01g03420 pycom01g03470 pycom05g02060 pycom05g02070 pycom15g29990
rosa_chinensis	RchiOBHm_Chr2g0119881 RchiOBHm_Chr6g0274931 RchiOBHm_Chr7g0217741
rosa_laevigata	RLG00000002442 RLG00000013507 RLG00000018496
rosa_multiflora	Rmu_sc0000202.1_g000022 Rmu_sc0001501.1_g000028 Rmu_sc0007760.1_g000002
rosa_roxburghii	Rroxscaffold_2G00124010 Rroxscaffold_3G00241720 Rroxscaffold_7G00193790
rosa_rugosa	Rorug02G0224300 Rorug02G0224400 Rorug02G0224500 Rorug06G0086400 Rorug06G0086500 Rorug07G0170900.1
rosa_samantha	Rh2AG282100 Rh2BG293400 Rh2DG288300 Rh2DG307400 Rh6AG201300 Rh6BG204900 Rh6CG206300 Rh6DG196400 Rh7AG311600 Rh7BG303500 Rh7CG330400
rosa_wichuraiana	Rw2G022520 Rw6G017510 Rw7G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1329
Acc36I	ACCTGC	2 cut(s)	2455, 2668
AccB1I	GGYRCC	1 cut(s)	1453
AccII	CGCG	4 cut(s)	66, 72, 420, 1585
AccIII	TCCGGA	2 cut(s)	557, 2695
AciI	CCGC	6 cut(s)	61, 64, 381, 418, 1583, 2855
AcoI	YGGCCR	6 cut(s)	24, 288, 400, 415, 1543, 3234
AcsI	RAATTY	7 cut(s)	332, 1256, 1316, 1702, 2089, 2167, 2684
AcuI	CTGAAG	1 cut(s)	1918
AfaI	GTAC	4 cut(s)	1105, 1359, 2618, 2653
AflIII	ACRYGT	1 cut(s)	1695
AgsI	TTSAA	7 cut(s)	100, 262, 1702, 2080, 2150, 2159, 2525
AhdI	GACNNNNNGTC	1 cut(s)	1039
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	7 cut(s)	977, 1495, 1519, 1587, 1615, 1988, 3255
AjuI	GAANNNNNNNTTGG	2 cut(s)	2190, 2222
AloI	GAACNNNNNNTCC	2 cut(s)	1491, 1523
Alw21I	GWGCWC	4 cut(s)	51, 1312, 1680, 2190
Alw26I	GTCTC	9 cut(s)	120, 272, 436, 1047, 1195, 1606, 1672, 2220, 2736
AlwNI	CAGNNNCTG	2 cut(s)	596, 2114
Aor13HI	TCCGGA	2 cut(s)	557, 2695
ApaI	GGGCCC	1 cut(s)	2512
ApeKI	GCWGC	3 cut(s)	367, 644, 1217
ApoI	RAATTY	7 cut(s)	332, 1256, 1316, 1702, 2089, 2167, 2684
AseI	ATTAAT	1 cut(s)	1425
Asp700I	GAANNNNTTC	2 cut(s)	332, 2298
AspLEI	GCGC	6 cut(s)	72, 219, 376, 422, 1330, 1587
AspS9I	GGNCC	8 cut(s)	767, 1273, 1660, 1904, 2508, 2509, 3065, 3248
AsuHPI	GGTGA	4 cut(s)	305, 1147, 2836, 3112
AsuII	TTCGAA	1 cut(s)	1420
AsuNHI	GCTAGC	1 cut(s)	2714
AvaII	GGWCC	3 cut(s)	1273, 1660, 1904
BaeGI	GKGCMC	1 cut(s)	2512
BalI	TGGCCA	3 cut(s)	402, 1545, 3236
BamHI	GGATCC	6 cut(s)	570, 625, 903, 1111, 1768, 1896
BanI	GGYRCC	1 cut(s)	1453
BanII	GRGCYC	3 cut(s)	51, 141, 2512
BarI	GAAGNNNNNNTAC	2 cut(s)	1385, 1417
BauI	CACGAG	1 cut(s)	1305
BbsI	GAAGAC	2 cut(s)	312, 1924
Bbv12I	GWGCWC	4 cut(s)	51, 1312, 1680, 2190
BbvI	GCAGC	3 cut(s)	379, 631, 1204
BceAI	ACGGC	2 cut(s)	430, 667
BciT130I	CCWGG	7 cut(s)	979, 1497, 1521, 1589, 1617, 1990, 3257
BciVI	GTATCC	1 cut(s)	2444
BclI	TGATCA	4 cut(s)	855, 988, 1513, 1714
BcoDI	GTCTC	9 cut(s)	120, 272, 436, 1047, 1195, 1606, 1672, 2220, 2736
BfaI	CTAG	3 cut(s)	2243, 2271, 2715
BfmI	CTRYAG	2 cut(s)	713, 2610
BfoI	RGCGCY	1 cut(s)	220
BfuAI	ACCTGC	2 cut(s)	2455, 2668
BfuI	GTATCC	1 cut(s)	2444
BisI	GCNGC	5 cut(s)	64, 368, 418, 645, 1218
BlsI	GCNGC	5 cut(s)	65, 369, 419, 646, 1219
Bme1390I	CCNGG	7 cut(s)	979, 1497, 1521, 1589, 1617, 1990, 3257
Bme18I	GGWCC	3 cut(s)	1273, 1660, 1904
BmeRI	GACNNNNNGTC	1 cut(s)	1039
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	8 cut(s)	767, 1273, 1660, 1904, 2508, 2509, 3065, 3248
BmrFI	CCNGG	7 cut(s)	979, 1497, 1521, 1589, 1617, 1990, 3257
BmrI	ACTGGG	2 cut(s)	182, 1172
BmsI	GCATC	8 cut(s)	376, 913, 1951, 2169, 2240, 2288, 2391, 2920
BmtI	GCTAGC	1 cut(s)	2718
BmuI	ACTGGG	2 cut(s)	182, 1172
BpiI	GAAGAC	2 cut(s)	312, 1924
BpmI	CTGGAG	5 cut(s)	1068, 1662, 2147, 2606, 3278
Bpu10I	CCTNAGC	1 cut(s)	2184
Bpu14I	TTCGAA	1 cut(s)	1420
BpuEI	CTTGAG	1 cut(s)	3110
Bsa29I	ATCGAT	2 cut(s)	1840, 2630
BsaBI	GATNNNNATC	2 cut(s)	927, 1713
BsaI	GGTCTC	3 cut(s)	436, 1195, 1606
BsaWI	WCCGGW	3 cut(s)	39, 557, 2695
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 2579, 2609
Bse118I	RCCGGY	2 cut(s)	26, 290
Bse1I	ACTGG	6 cut(s)	188, 605, 1085, 1178, 1801, 1927
Bse3DI	GCAATG	5 cut(s)	396, 1395, 2404, 2542, 2969
Bse8I	GATNNNNATC	2 cut(s)	927, 1713
BseAI	TCCGGA	2 cut(s)	557, 2695
BseBI	CCWGG	7 cut(s)	979, 1497, 1521, 1589, 1617, 1990, 3257
BseCI	ATCGAT	2 cut(s)	1840, 2630
BseJI	GATNNNNATC	2 cut(s)	927, 1713
BseMI	GCAATG	5 cut(s)	396, 1395, 2404, 2542, 2969
BseMII	CTCAG	7 cut(s)	257, 603, 960, 1037, 1823, 2175, 2382
BseNI	ACTGG	6 cut(s)	188, 605, 1085, 1178, 1801, 1927
BseRI	GAGGAG	5 cut(s)	415, 424, 1119, 2847, 2937
BseSI	GKGCMC	1 cut(s)	2512
BseX3I	CGGCCG	1 cut(s)	415
BseXI	GCAGC	3 cut(s)	379, 631, 1204
Bsh1236I	CGCG	4 cut(s)	66, 72, 420, 1585
Bsh1285I	CGRYCG	1 cut(s)	418
BshNI	GGYRCC	1 cut(s)	1453
BshVI	ATCGAT	2 cut(s)	1840, 2630
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	4 cut(s)	51, 1312, 1680, 2190
BsiSI	CCGG	7 cut(s)	27, 40, 196, 291, 558, 2696, 3024
BslFI	GGGAC	1 cut(s)	1259
BsmAI	GTCTC	9 cut(s)	120, 272, 436, 1047, 1195, 1606, 1672, 2220, 2736
BsmBI	CGTCTC	2 cut(s)	120, 272
BsmFI	GGGAC	1 cut(s)	1259
BsmI	GAATGC	1 cut(s)	1657
Bso31I	GGTCTC	3 cut(s)	436, 1195, 1606
Bsp119I	TTCGAA	1 cut(s)	1420
Bsp120I	GGGCCC	1 cut(s)	2508
Bsp1286I	GDGCHC	6 cut(s)	51, 141, 1312, 1680, 2190, 2512
Bsp13I	TCCGGA	2 cut(s)	557, 2695
Bsp19I	CCATGG	4 cut(s)	397, 621, 2410, 2621
BspACI	CCGC	6 cut(s)	61, 64, 381, 418, 1583, 2855
BspCNI	CTCAG	7 cut(s)	256, 602, 959, 1038, 1822, 2176, 2381
BspDI	ATCGAT	2 cut(s)	1840, 2630
BspEI	TCCGGA	2 cut(s)	557, 2695
BspFNI	CGCG	4 cut(s)	66, 72, 420, 1585
BspHI	TCATGA	1 cut(s)	1761
BspMI	ACCTGC	2 cut(s)	2455, 2668
BspOI	GCTAGC	1 cut(s)	2718
BspQI	GCTCTTC	1 cut(s)	3089
BspT104I	TTCGAA	1 cut(s)	1420
BspT107I	GGYRCC	1 cut(s)	1453
BspTNI	GGTCTC	3 cut(s)	436, 1195, 1606
BsrDI	GCAATG	5 cut(s)	396, 1395, 2404, 2542, 2969
BsrFI	RCCGGY	2 cut(s)	26, 290
BsrI	ACTGG	6 cut(s)	188, 605, 1085, 1178, 1801, 1927
BssAI	RCCGGY	2 cut(s)	26, 290
BssSI	CACGAG	1 cut(s)	1305
BssT1I	CCWWGG	7 cut(s)	397, 621, 1656, 1900, 2410, 2512, 2621
Bst2BI	CACGAG	1 cut(s)	1305
Bst2UI	CCWGG	7 cut(s)	979, 1497, 1521, 1589, 1617, 1990, 3257
Bst4CI	ACNGT	7 cut(s)	936, 1108, 1150, 1861, 2432, 2614, 2908
Bst6I	CTCTTC	5 cut(s)	1388, 1401, 2078, 2133, 3089
BstAPI	GCANNNNNTGC	2 cut(s)	2544, 2939
BstBI	TTCGAA	1 cut(s)	1420
BstC8I	GCNNGC	9 cut(s)	28, 68, 372, 1944, 2006, 2121, 2540, 2716, 3189
BstDEI	CTNAG	9 cut(s)	243, 589, 946, 1046, 1263, 1346, 1809, 2184, 2368
BstDSI	CCRYGG	5 cut(s)	397, 621, 1490, 2410, 2621
BstFNI	CGCG	4 cut(s)	66, 72, 420, 1585
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	6 cut(s)	72, 219, 376, 422, 1330, 1587
BstMAI	GTCTC	9 cut(s)	120, 272, 436, 1047, 1195, 1606, 1672, 2220, 2736
BstMCI	CGRYCG	1 cut(s)	418
BstNI	CCWGG	7 cut(s)	979, 1497, 1521, 1589, 1617, 1990, 3257
BstNSI	RCATGY	4 cut(s)	374, 527, 1699, 1998
BstSCI	CCNGG	7 cut(s)	977, 1495, 1519, 1587, 1615, 1988, 3255
BstSFI	CTRYAG	2 cut(s)	713, 2610
BstSLI	GKGCMC	1 cut(s)	2512
BstUI	CGCG	4 cut(s)	66, 72, 420, 1585
BstV1I	GCAGC	3 cut(s)	379, 631, 1204
BstV2I	GAAGAC	2 cut(s)	312, 1924
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstZI	CGGCCG	1 cut(s)	415
Bsu15I	ATCGAT	2 cut(s)	1840, 2630
BsuI	GTATCC	1 cut(s)	2444
BsuTUI	ATCGAT	2 cut(s)	1840, 2630
BtgI	CCRYGG	5 cut(s)	397, 621, 1490, 2410, 2621
BtrI	CACGTC	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	1173
BtsIMutI	CAGTG	8 cut(s)	251, 612, 932, 1113, 1146, 1173, 2258, 2619
BveI	ACCTGC	2 cut(s)	2455, 2668
Cac8I	GCNNGC	9 cut(s)	28, 68, 372, 1944, 2006, 2121, 2540, 2716, 3189
CaiI	CAGNNNCTG	2 cut(s)	596, 2114
CciI	TCATGA	1 cut(s)	1761
CfoI	GCGC	6 cut(s)	72, 219, 376, 422, 1330, 1587
Cfr10I	RCCGGY	2 cut(s)	26, 290
Cfr13I	GGNCC	8 cut(s)	767, 1273, 1660, 1904, 2508, 2509, 3065, 3248
ClaI	ATCGAT	2 cut(s)	1840, 2630
Csp6I	GTAC	4 cut(s)	1104, 1358, 2617, 2652
CviQI	GTAC	4 cut(s)	1104, 1358, 2617, 2652
DdeI	CTNAG	9 cut(s)	243, 589, 946, 1046, 1263, 1346, 1809, 2184, 2368
DraI	TTTAAA	3 cut(s)	1414, 2455, 2959
DriI	GACNNNNNGTC	1 cut(s)	1039
EaeI	YGGCCR	6 cut(s)	24, 288, 400, 415, 1543, 3234
EagI	CGGCCG	1 cut(s)	415
Eam1104I	CTCTTC	5 cut(s)	1388, 1401, 2078, 2133, 3089
Eam1105I	GACNNNNNGTC	1 cut(s)	1039
EarI	CTCTTC	5 cut(s)	1388, 1401, 2078, 2133, 3089
EciI	GGCGGA	2 cut(s)	50, 370
Ecl136II	GAGCTC	1 cut(s)	49
EclXI	CGGCCG	1 cut(s)	415
Eco130I	CCWWGG	7 cut(s)	397, 621, 1656, 1900, 2410, 2512, 2621
Eco24I	GRGCYC	3 cut(s)	51, 141, 2512
Eco31I	GGTCTC	3 cut(s)	436, 1195, 1606
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	3 cut(s)	1273, 1660, 1904
Eco52I	CGGCCG	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	1918
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	4 cut(s)	1273, 1904, 2509, 3065
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	7 cut(s)	977, 1495, 1519, 1587, 1615, 1988, 3255
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	7 cut(s)	397, 621, 1656, 1900, 2410, 2512, 2621
EcoT22I	ATGCAT	2 cut(s)	928, 2406
EcoT38I	GRGCYC	3 cut(s)	51, 141, 2512
ErhI	CCWWGG	7 cut(s)	397, 621, 1656, 1900, 2410, 2512, 2621
Esp3I	CGTCTC	2 cut(s)	120, 272
FalI	AAGNNNNNCTT	2 cut(s)	3071, 3103
FaqI	GGGAC	1 cut(s)	1259
FbaI	TGATCA	4 cut(s)	855, 988, 1513, 1714
Fnu4HI	GCNGC	5 cut(s)	64, 368, 418, 645, 1218
FriOI	GRGCYC	3 cut(s)	51, 141, 2512
Fsp4HI	GCNGC	5 cut(s)	64, 368, 418, 645, 1218
FspBI	CTAG	3 cut(s)	2243, 2271, 2715
FspI	TGCGCA	1 cut(s)	1329
GlaI	GCGC	6 cut(s)	71, 218, 375, 421, 1329, 1586
GluI	GCNGC	5 cut(s)	64, 368, 418, 645, 1218
GsuI	CTGGAG	5 cut(s)	1068, 1662, 2147, 2606, 3278
HaeII	RGCGCY	1 cut(s)	220
HapII	CCGG	7 cut(s)	27, 40, 196, 291, 558, 2696, 3024
HhaI	GCGC	6 cut(s)	72, 219, 376, 422, 1330, 1587
Hin6I	GCGC	6 cut(s)	70, 217, 374, 420, 1328, 1585
HinP1I	GCGC	6 cut(s)	70, 217, 374, 420, 1328, 1585
HincII	GTYRAC	1 cut(s)	1183
HindII	GTYRAC	1 cut(s)	1183
HpaII	CCGG	7 cut(s)	27, 40, 196, 291, 558, 2696, 3024
HphI	GGTGA	4 cut(s)	305, 1147, 2836, 3112
Hpy166II	GTNNAC	6 cut(s)	1171, 1183, 1470, 1623, 2258, 2617
Hpy8I	GTNNAC	6 cut(s)	1171, 1183, 1470, 1623, 2258, 2617
Hpy99I	CGWCG	5 cut(s)	56, 77, 134, 152, 167
HpyCH4III	ACNGT	7 cut(s)	936, 1108, 1150, 1861, 2432, 2614, 2908
HpyCH4IV	ACGT	2 cut(s)	132, 265
HpyF3I	CTNAG	9 cut(s)	243, 589, 946, 1046, 1263, 1346, 1809, 2184, 2368
HpySE526I	ACGT	2 cut(s)	132, 265
HspAI	GCGC	6 cut(s)	70, 217, 374, 420, 1328, 1585
KflI	GGGWCCC	1 cut(s)	1273
Kpn2I	TCCGGA	2 cut(s)	557, 2695
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Ksp22I	TGATCA	4 cut(s)	855, 988, 1513, 1714
LguI	GCTCTTC	1 cut(s)	3089
LmnI	GCTCC	6 cut(s)	91, 399, 548, 1643, 1969, 2587
Lsp1109I	GCAGC	3 cut(s)	379, 631, 1204
LweI	GCATC	8 cut(s)	376, 913, 1951, 2169, 2240, 2288, 2391, 2920
MaeI	CTAG	3 cut(s)	2243, 2271, 2715
MaeII	ACGT	2 cut(s)	132, 265
MaeIII	GTNAC	4 cut(s)	170, 1135, 2371, 2908
MfeI	CAATTG	1 cut(s)	2520
MhlI	GDGCHC	6 cut(s)	51, 141, 1312, 1680, 2190, 2512
MlsI	TGGCCA	3 cut(s)	402, 1545, 3236
MluNI	TGGCCA	3 cut(s)	402, 1545, 3236
MlyI	GAGTC	4 cut(s)	1674, 1757, 3065, 3148
MmeI	TCCRAC	6 cut(s)	33, 671, 1897, 2175, 2992, 3222
Mox20I	TGGCCA	3 cut(s)	402, 1545, 3236
Mph1103I	ATGCAT	2 cut(s)	928, 2406
MroI	TCCGGA	2 cut(s)	557, 2695
MroNI	GCCGGC	1 cut(s)	26
MroXI	GAANNNNTTC	2 cut(s)	332, 2298
MscI	TGGCCA	3 cut(s)	402, 1545, 3236
MslI	CAYNNNNRTG	6 cut(s)	732, 1877, 2014, 2409, 2959, 3170
Msp20I	TGGCCA	3 cut(s)	402, 1545, 3236
MspI	CCGG	7 cut(s)	27, 40, 196, 291, 558, 2696, 3024
MspR9I	CCNGG	7 cut(s)	979, 1497, 1521, 1589, 1617, 1990, 3257
MunI	CAATTG	1 cut(s)	2520
Mva1269I	GAATGC	1 cut(s)	1657
MvaI	CCWGG	7 cut(s)	979, 1497, 1521, 1589, 1617, 1990, 3257
MvnI	CGCG	4 cut(s)	66, 72, 420, 1585
NaeI	GCCGGC	1 cut(s)	28
NcoI	CCATGG	4 cut(s)	397, 621, 2410, 2621
NgoMIV	GCCGGC	1 cut(s)	26
NheI	GCTAGC	1 cut(s)	2714
NmeAIII	GCCGAG	1 cut(s)	245
NmuCI	GTSAC	2 cut(s)	1135, 2908
NsbI	TGCGCA	1 cut(s)	1329
NsiI	ATGCAT	2 cut(s)	928, 2406
NspI	RCATGY	4 cut(s)	374, 527, 1699, 1998
NspV	TTCGAA	1 cut(s)	1420
PaeI	GCATGC	1 cut(s)	374
PagI	TCATGA	1 cut(s)	1761
PciI	ACATGT	1 cut(s)	1695
PciSI	GCTCTTC	1 cut(s)	3089
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	1657
PdiI	GCCGGC	1 cut(s)	28
PdmI	GAANNNNTTC	2 cut(s)	332, 2298
PfeI	GAWTC	8 cut(s)	80, 258, 910, 982, 1528, 2133, 2632, 3027
PflFI	GACNNNGTC	1 cut(s)	1187
PfoI	TCCNGGA	2 cut(s)	977, 3255
PkrI	GCNGC	5 cut(s)	65, 369, 419, 646, 1219
PleI	GAGTC	4 cut(s)	1673, 1756, 3064, 3148
PpsI	GAGTC	4 cut(s)	1673, 1756, 3064, 3148
PpuMI	RGGWCCY	2 cut(s)	1273, 1904
PscI	ACATGT	1 cut(s)	1695
PshBI	ATTAAT	1 cut(s)	1425
Psp124BI	GAGCTC	1 cut(s)	51
Psp5II	RGGWCCY	2 cut(s)	1273, 1904
Psp6I	CCWGG	7 cut(s)	977, 1495, 1519, 1587, 1615, 1988, 3255
PspGI	CCWGG	7 cut(s)	977, 1495, 1519, 1587, 1615, 1988, 3255
PspOMI	GGGCCC	1 cut(s)	2508
PspPI	GGNCC	8 cut(s)	767, 1273, 1660, 1904, 2508, 2509, 3065, 3248
PspPPI	RGGWCCY	2 cut(s)	1273, 1904
PstNI	CAGNNNCTG	2 cut(s)	596, 2114
PsyI	GACNNNGTC	1 cut(s)	1187
RsaI	GTAC	4 cut(s)	1105, 1359, 2618, 2653
RsaNI	GTAC	4 cut(s)	1104, 1358, 2617, 2652
RseI	CAYNNNNRTG	6 cut(s)	732, 1877, 2014, 2409, 2959, 3170
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	3089
SatI	GCNGC	5 cut(s)	64, 368, 418, 645, 1218
Sau96I	GGNCC	8 cut(s)	767, 1273, 1660, 1904, 2508, 2509, 3065, 3248
SchI	GAGTC	4 cut(s)	1674, 1757, 3065, 3148
ScrFI	CCNGG	7 cut(s)	979, 1497, 1521, 1589, 1617, 1990, 3257
SduI	GDGCHC	6 cut(s)	51, 141, 1312, 1680, 2190, 2512
SfaNI	GCATC	8 cut(s)	376, 913, 1951, 2169, 2240, 2288, 2391, 2920
SfcI	CTRYAG	2 cut(s)	713, 2610
SfuI	TTCGAA	1 cut(s)	1420
SinI	GGWCC	3 cut(s)	1273, 1660, 1904
SmiI	ATTTAAAT	1 cut(s)	2959
SmiMI	CAYNNNNRTG	6 cut(s)	732, 1877, 2014, 2409, 2959, 3170
SmlI	CTYRAG	1 cut(s)	3125
SmoI	CTYRAG	1 cut(s)	3125
SphI	GCATGC	1 cut(s)	374
SsiI	CCGC	6 cut(s)	61, 64, 381, 418, 1583, 2855
SspI	AATATT	3 cut(s)	2529, 2710, 3183
SspMI	CTAG	3 cut(s)	2243, 2271, 2715
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	7 cut(s)	977, 1495, 1519, 1587, 1615, 1988, 3255
StyI	CCWWGG	7 cut(s)	397, 621, 1656, 1900, 2410, 2512, 2621
SwaI	ATTTAAAT	1 cut(s)	2959
TaaI	ACNGT	7 cut(s)	936, 1108, 1150, 1861, 2432, 2614, 2908
TaiI	ACGT	2 cut(s)	135, 268
TaqII	GACCGA	1 cut(s)	418
TatI	WGTACW	2 cut(s)	1103, 2651
TauI	GCSGC	2 cut(s)	66, 420
TfiI	GAWTC	8 cut(s)	80, 258, 910, 982, 1528, 2133, 2632, 3027
TscAI	CASTG	8 cut(s)	251, 612, 939, 1113, 1153, 1173, 2265, 2619
TseFI	GTSAC	2 cut(s)	1135, 2908
TseI	GCWGC	3 cut(s)	367, 644, 1217
Tsp45I	GTSAC	2 cut(s)	1135, 2908
TspGWI	ACGGA	2 cut(s)	90, 1761
TspRI	CASTG	8 cut(s)	251, 612, 939, 1113, 1153, 1173, 2265, 2619
Tth111I	GACNNNGTC	1 cut(s)	1187
VpaK11BI	GGWCC	3 cut(s)	1273, 1660, 1904
VspI	ATTAAT	1 cut(s)	1425
XapI	RAATTY	7 cut(s)	332, 1256, 1316, 1702, 2089, 2167, 2684
XceI	RCATGY	4 cut(s)	374, 527, 1699, 1998
XcmI	CCANNNNNNNNNTGG	3 cut(s)	16, 1165, 1464
XmnI	GAANNNNTTC	2 cut(s)	332, 2298
XspI	CTAG	3 cut(s)	2243, 2271, 2715
Zsp2I	ATGCAT	2 cut(s)	928, 2406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.