Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000892

Physical Location & Seq

Genomic Coordinates Forward (+)

3908929 .. 3914908

Gene Structure 5980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1029800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3288 bp

ATGGATACCAAAGGAAGACTTATTGCAGGTTCTCACAACAGGAATGAGTTTGTTCTCATCAATGCTGATGAGGTTTCAAGAGTAACATCTGTTAAAGAACTGAGTGGGCAGATTTGCCAGATCTGTGGAGATGAGATTGAGATTACAGTGGATGGGGAGCCATTTGTTGCTTGCAATGAATGTGCATTCCCCGTTTGCAGATCTTGCTATGAGTATGAAAGGCGCGAGGGCAATCAAGCTTGCCCGCAATGCAAAACCCGATACAAGCGCATCAAAGGGAGTCCAAGAGTTGAAGGCGACGAAGAAGAGGATGACATTGATGATTTGGAGAATGAGTTTGATATTGCTAGCAGTGAGAGGAGAGATCCTCACAGCATTGCTGAGGCAGTGCTGGCTGCTCGCCTTAACATTGGAAGGGGTTCGCATGTCAACGGTTCGGGGATTAGCACACCAGCAGAGTTTGACTCTGCCTCCATTGCCTCCGAGATCCCTCTGCTGACCTATGGCCAAGAGGATGTTGGAATTGCCTCTGATAAGCATGCTCTTATTGTTCCCCCATTTATGAGTCGCGGAAAACGGGTTCATCCAATGCCATCTTCTGATTCCTCTATGTCCTTTCCACCGAGGCCAATGGATCCTAAGAAAGACTTAGCCGTGTATGGTTATGGAACTGTTGCATGGAAGGAGAGAATGGAGGACTGGAAGAAGAAGCAAAATGAGAAACTTCAAGTGGTGAAGCACCAAGGAGGAAATAATGGTGGAGACAATAATGGAGAACCAGATGATCCCGATTTACCAAAGATGGATGAAGGCAGGCAGCCGCTTTCGAGGAAGTTGCCTATTTCTTCTAGCAAGATAAATCCTTATAGGATGGTCATCTTACTCCGTCTTACAGTTCTTGGCCTCTTTTTTCACTATAGAATTCTCCACCCGGTCAACAATGCCTATGGACTGTGGTTAACTTCTATAATATGTGAGATTTGGTTTGCCATGTCATGGATATTGGATCAGTTTCCTAAGTGGTATCCAATTGAGAGAGAAACGTACCTTGATCGATTATCATTGAGGTATGAGAAAGAAGGGAAGCCATCTGAGTTGGCTGATCTAGATGTGTTTGTTAGTACTGTTGATCCTATGAAGGAACCTCCACTTATCACAGCAAACACGGTCCTGTCCATCCTTGCCGTAGATTATCCGGTTGACAAAGTTGCATGTTATGTATCAGATGATGGTGCTGCAATGCTCACTTTTGAAGCCCTCTCAGAGACATCTGAGTTTGCACGAAAGTGGGTTCCATTCTGCAAGAAGTTCAGCATTGAACCCCGTGCCCCAGAGTGGTATTTTGCTCAAAAAGTTGACTATCTGAGAGACAAAGTTGATCCGACATTTGTCAGGGAACGTCGAGCCATTAAGAGGGAGTATGAAGAGTTCAAAGTTCGGATAAATTTGTTGGTTGCAACAGCACAGAAAGTTCCTGAGGAGGGTTGGACAATGCAGGACGGGACTCCATGGCCTGGAAATAATGTCAGGGATCATCCAGGGATGATTCAGGTTTTCCTTGGTCAAAATGGTGTTCGTGATGTAGAAGGAAATGAATTACCACGTCTTGTTTATGTGTCTCGTGAGAAGAGACCGGGTTTTGATCACCACAAGAAAGCTGGAGCTATGAATTCTTTGGTGCGGGTATCAGCAATCATCTCAAATGCTCCTTACATACTGAATGTTGATTGTGATCACTACATCAACAACAGCAAAGCTCTTCGTGAAGCAATGTGTTTCATGATGGACCCCCAATCAGGAAAGAAGATCTGTTATGTACAATTTCCTCAAAGATTTGATGGGATTGATCTTCATGATAGATACTCAAATCGCAACGTTGTATTCTTTGATATCAATATGAAAGGTTTAGATGGGATCCAAGGGCCCATTTATGTCGGAACCGGGTGTGTCTTCCGAAGGCAGGCACTCTACGGATATGATGCTCCTACCAAGAAAAAACCACCAGGGAAGACTTGCAATTGTTGGCCAAAATGGTGCTGCATGTGTTGTGGATCTAGAAAGAAGAACAAGAAATCCAAGTCAAATGATAAAAAGAAGAAGACCAAGGATACCTCAAAGCAGATACATGCACTAGAAAATATTCAGGAGGGAATTGAAGGAATAGATAATGAAAAGTCATCCCTGATTCCCCAAATAAAATTTGAGAAAAAGTTTGGACAGTCGCCAGTTTTCATTGCTTCAACACTTATGGAAGACGGTGGAGTTCCAAAGGGAACAAGTTCTGCATCACTCTTGAAGGAAGCCATCCATGTCATTAGCTGTGGCTATGAAGATAAATCAGAATGGGGAAAAGAGGTTGGGTGGATCTATGGTTCTGTTACAGAGGATATCCTAACGGGCTTCAAGATGCATTGCCATGGCTGGCGATCTGTGTATTGCATGCCCAAGAGACCTGCATTCAAGGGTTCTGCTCCTATTAATCTTTCAGATCGGCTTCACCAGGTGCTTCGGTGGGCTTTGGGATCTGTTGAAATTTTGTTGAGCAGGCATTGCCCTATTTGGTATGGATACGGATGTGGTTTGAAATGGTTGGAGCGCTTTTCTTATATAAACTCGGTTGTTTATCCTTTGACATCCATCCCCTTGCTTGCCTACTGTTCCTTGCCGGCTGTCTGTCTGCTTACTGGGAAATTTATTGTCCCTGAGATTAGCAACTATGCCAGTATCCTTTTTATGGCTCTCTTCTTGTCCATTGCTGCAACGAGCATACTCGAGATGCAGTGGGGACATGTTGGCATCCACGACTGGTGGAGGAACGAACAGTTCTGGGTGATTGGTGGTGCGTCATCACACTTCTTCGCACTCATCCAGGGTCTGCTGAAGGTTTTGGGTGGTGTTAACACAAACTTCACTGTCACATCCAAAGCAGCAGATGACGGAGAGTTTTCCGACCTATACCTCTTCAAGTGGACGTCACTTTTGATCCCGCCCATGAGCTTATTGATCATAAACATAATTGGAGTCGTAGTTGGAGTTTCGGATGCCATCAACAATGGTTACGAAACATGGGGTCCTCTCTTTGGTAGGCTGTTCTTTGCCATTTGGGTCATCGTCCATCTTTACCCGTTCCTAAAAGGTTTGGTGGGAAGACAAGAGAGACTTCCCACCATCATTGTGGTGTGGTCAATTCTTCTGGCATCCATATTCTCCCTGCTATGGGTCCGAATCAACCCATTTGTGAACAAAGGTGGCATTGTACTAGAAGTTTGCGGGCTGGATTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0005975 GO:0005976 GO:0006073 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009825 GO:0009832 GO:0009833 GO:0009987 GO:0010330 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031224 GO:0031226 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

1096

Amino Acids

123.51

Weight (kDa)

7.24

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	30 - 105	7.2e-42	Zinc-binding RING-finger
Cellulose_synt	PF03552	369 - 1083	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	785 - 888	9.9e-07	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21770 AT4G39350 AT5G09870 AT5G64740
fragaria_vesca	FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_5g26830 FvH4_5g26830 FvH4_5g26830
malus_domestica	MD00G1146900.v1.1 MD05G1029400.v1.1 MD10G1029800.v1.1 MD15G1340200.v1.1
prunus_persica	Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.8G035100_v2.0.a1
pyrus_communis	pycom01g03410 pycom01g03420 pycom01g03470 pycom05g02060 pycom05g02070 pycom15g29990
rosa_chinensis	RchiOBHm_Chr2g0119881 RchiOBHm_Chr6g0274931 RchiOBHm_Chr7g0217741
rosa_laevigata	RLG00000002442 RLG00000013507 RLG00000018496
rosa_multiflora	Rmu_sc0000202.1_g000022 Rmu_sc0001501.1_g000028 Rmu_sc0007760.1_g000002
rosa_roxburghii	Rroxscaffold_2G00124010 Rroxscaffold_3G00241720 Rroxscaffold_7G00193790
rosa_rugosa	Rorug02G0224300 Rorug02G0224400 Rorug02G0224500 Rorug06G0086400 Rorug06G0086500 Rorug07G0170900.1
rosa_samantha	Rh2AG282100 Rh2BG293400 Rh2DG288300 Rh2DG307400 Rh6AG201300 Rh6BG204900 Rh6CG206300 Rh6DG196400 Rh7AG311600 Rh7BG303500 Rh7CG330400
rosa_wichuraiana	Rw2G022520 Rw6G017510 Rw7G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2975
Acc36I	ACCTGC	2 cut(s)	17, 2461
AccB7I	CCANNNNNTGG	2 cut(s)	996, 1514
AccII	CGCG	2 cut(s)	225, 570
AciI	CCGC	6 cut(s)	245, 570, 821, 1681, 2987, 3270
AclI	AACGTT	1 cut(s)	1875
AcoI	YGGCCR	2 cut(s)	505, 2024
AcsI	RAATTY	6 cut(s)	921, 1444, 1669, 2198, 2532, 2690
AcuI	CTGAAG	1 cut(s)	2900
AcyI	GRCGYC	1 cut(s)	2972
AdeI	CACNNNGTG	1 cut(s)	2503
AfaI	GTAC	4 cut(s)	1046, 1123, 1818, 3258
AfeI	AGCGCT	1 cut(s)	2597
AflIII	ACRYGT	1 cut(s)	2788
AjiI	CACGTC	1 cut(s)	1604
AjnI	CCWGG	5 cut(s)	1513, 1537, 2002, 2499, 2868
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AleI	CACNNNNGTG	1 cut(s)	1285
AloI	GAACNNNNNNTCC	6 cut(s)	564, 596, 2057, 2089, 2356, 2388
AluBI	AGCT	6 cut(s)	239, 1658, 1664, 1757, 2319, 2997
AluI	AGCT	6 cut(s)	239, 1658, 1664, 1757, 2319, 2997
Alw26I	GTCTC	7 cut(s)	756, 1259, 1362, 1623, 1624, 2443, 3151
AlwNI	CAGNNNCTG	1 cut(s)	2875
Ama87I	CYCGRG	1 cut(s)	2771
Aor51HI	AGCGCT	1 cut(s)	2597
AoxI	GGCC	6 cut(s)	505, 626, 901, 1511, 1922, 2024
ApaI	GGGCCC	1 cut(s)	1926
ApeKI	GCWGC	6 cut(s)	395, 817, 1235, 2037, 2756, 2927
ApoI	RAATTY	6 cut(s)	921, 1444, 1669, 2198, 2532, 2690
ArsI	GACNNNNNNTTYG	2 cut(s)	2962, 2994
AseI	ATTAAT	1 cut(s)	2478
Asp700I	GAANNNNTTC	3 cut(s)	418, 2139, 2278
AspLEI	GCGC	3 cut(s)	225, 270, 2598
AspS9I	GGNCC	6 cut(s)	1168, 1786, 1922, 1923, 3071, 3220
AsuC2I	CCSGG	3 cut(s)	932, 1635, 1942
AsuHPI	GGTGA	4 cut(s)	745, 1637, 2489, 2842
AsuNHI	GCTAGC	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	2771
AvaII	GGWCC	4 cut(s)	1168, 1786, 3071, 3220
AxyI	CCTNAGG	1 cut(s)	1476
BaeGI	GKGCMC	2 cut(s)	1330, 1926
BaeI	ACNNNNGTAYC	2 cut(s)	2560, 2593
BalI	TGGCCA	2 cut(s)	507, 2026
BamHI	GGATCC	2 cut(s)	634, 1914
BanII	GRGCYC	1 cut(s)	1926
BauI	CACGAG	1 cut(s)	1620
BbsI	GAAGAC	6 cut(s)	22, 1942, 2015, 2105, 2259, 3154
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	6 cut(s)	382, 829, 1222, 2024, 2743, 2939
BceAI	ACGGC	2 cut(s)	638, 1169
BcgI	CGANNNNNNTGC	2 cut(s)	817, 851
BciT130I	CCWGG	5 cut(s)	1515, 1539, 2004, 2501, 2870
BciVI	GTATCC	4 cut(s)	1035, 2101, 2561, 2735
BclI	TGATCA	3 cut(s)	1642, 1732, 3003
BcnI	CCSGG	3 cut(s)	932, 1635, 1942
BcoDI	GTCTC	7 cut(s)	756, 1259, 1362, 1623, 1624, 2443, 3151
BfaI	CTAG	6 cut(s)	348, 849, 1106, 2055, 2132, 3260
BfmI	CTRYAG	1 cut(s)	916
BfoI	RGCGCY	1 cut(s)	2599
BfuAI	ACCTGC	2 cut(s)	17, 2461
BfuI	GTATCC	4 cut(s)	1035, 2101, 2561, 2735
BglII	AGATCT	3 cut(s)	120, 200, 1806
BisI	GCNGC	7 cut(s)	396, 818, 821, 1236, 2038, 2757, 2928
BlsI	GCNGC	7 cut(s)	397, 819, 822, 1237, 2039, 2758, 2929
BmcAI	AGTACT	1 cut(s)	1123
Bme1390I	CCNGG	8 cut(s)	932, 1515, 1539, 1635, 1942, 2004, 2501, 2870
Bme18I	GGWCC	4 cut(s)	1168, 1786, 3071, 3220
BmeT110I	CYCGRG	1 cut(s)	2771
BmgBI	CACGTC	1 cut(s)	1604
BmgT120I	GGNCC	6 cut(s)	1168, 1786, 1922, 1923, 3071, 3220
BmrFI	CCNGG	8 cut(s)	932, 1515, 1539, 1635, 1942, 2004, 2501, 2870
BmrI	ACTGGG	1 cut(s)	2694
BmsI	GCATC	8 cut(s)	279, 1969, 2294, 2397, 2766, 2805, 3031, 3206
BmtI	GCTAGC	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	2694
BoxI	GACNNNNGTC	1 cut(s)	1388
BpiI	GAAGAC	6 cut(s)	22, 1942, 2015, 2105, 2259, 3154
BplI	GAGNNNNNCTC	4 cut(s)	352, 384, 449, 481
BpmI	CTGGAG	1 cut(s)	1680
Bpu10I	CCTNAGC	1 cut(s)	381
BpuMI	CCSGG	3 cut(s)	932, 1635, 1942
Bsa29I	ATCGAT	1 cut(s)	1054
BsaBI	GATNNNNATC	2 cut(s)	875, 1731
BsaHI	GRCGYC	1 cut(s)	2972
BsaI	GGTCTC	2 cut(s)	1624, 2443
BsaWI	WCCGGW	1 cut(s)	1195
BsaXI	ACNNNNNCTCC	6 cut(s)	320, 350, 455, 485, 3012, 3042
Bse118I	RCCGGY	1 cut(s)	2665
Bse1I	ACTGG	5 cut(s)	704, 2225, 2689, 2721, 2810
Bse21I	CCTNAGG	1 cut(s)	1476
Bse8I	GATNNNNATC	2 cut(s)	875, 1731
BseBI	CCWGG	5 cut(s)	1515, 1539, 2004, 2501, 2870
BseCI	ATCGAT	1 cut(s)	1054
BseJI	GATNNNNATC	2 cut(s)	875, 1731
BseMII	CTCAG	8 cut(s)	92, 372, 1083, 1263, 1275, 1355, 1467, 2694
BseNI	ACTGG	5 cut(s)	704, 2225, 2689, 2721, 2810
BseRI	GAGGAG	2 cut(s)	373, 1493
BseSI	GKGCMC	2 cut(s)	1330, 1926
BseXI	GCAGC	6 cut(s)	382, 829, 1222, 2024, 2743, 2939
Bsh1236I	CGCG	2 cut(s)	225, 570
BshFI	GGCC	6 cut(s)	507, 628, 903, 1513, 1924, 2026
BshVI	ATCGAT	1 cut(s)	1054
BsiHKCI	CYCGRG	1 cut(s)	2771
BsiSI	CCGG	5 cut(s)	932, 1196, 1634, 1941, 2666
BslFI	GGGAC	3 cut(s)	1516, 2684, 2799
BsmAI	GTCTC	7 cut(s)	756, 1259, 1362, 1623, 1624, 2443, 3151
BsmFI	GGGAC	3 cut(s)	1516, 2684, 2799
BsmI	GAATGC	2 cut(s)	185, 2456
BsnI	GGCC	6 cut(s)	507, 628, 903, 1513, 1924, 2026
Bso31I	GGTCTC	2 cut(s)	1624, 2443
BsoBI	CYCGRG	1 cut(s)	2771
Bsp120I	GGGCCC	1 cut(s)	1922
Bsp1286I	GDGCHC	2 cut(s)	1330, 1926
Bsp1407I	TGTACA	1 cut(s)	1816
Bsp19I	CCATGG	2 cut(s)	1508, 2416
BspACI	CCGC	6 cut(s)	245, 570, 821, 1681, 2987, 3270
BspANI	GGCC	6 cut(s)	507, 628, 903, 1513, 1924, 2026
BspCNI	CTCAG	8 cut(s)	93, 373, 1084, 1264, 1274, 1356, 1468, 2695
BspDI	ATCGAT	1 cut(s)	1054
BspFNI	CGCG	2 cut(s)	225, 570
BspHI	TCATGA	2 cut(s)	1779, 1852
BspMI	ACCTGC	2 cut(s)	17, 2461
BspOI	GCTAGC	1 cut(s)	351
BspQI	GCTCTTC	1 cut(s)	1764
BspTNI	GGTCTC	2 cut(s)	1624, 2443
BsrFI	RCCGGY	1 cut(s)	2665
BsrGI	TGTACA	1 cut(s)	1816
BsrI	ACTGG	5 cut(s)	704, 2225, 2689, 2721, 2810
BssAI	RCCGGY	1 cut(s)	2665
BssNI	GRCGYC	1 cut(s)	2972
BssSI	CACGAG	1 cut(s)	1620
BssT1I	CCWWGG	6 cut(s)	742, 1508, 1558, 1918, 2103, 2416
Bst2BI	CACGAG	1 cut(s)	1620
Bst2UI	CCWGG	5 cut(s)	1515, 1539, 2004, 2501, 2870
Bst6I	CTCTTC	6 cut(s)	300, 1419, 1622, 1764, 2747, 2966
BstACI	GRCGYC	1 cut(s)	2972
BstAPI	GCANNNNNTGC	2 cut(s)	204, 2550
BstAUI	TGTACA	1 cut(s)	1816
BstDSI	CCRYGG	2 cut(s)	1508, 2416
BstFNI	CGCG	2 cut(s)	225, 570
BstH2I	RGCGCY	1 cut(s)	2599
BstHHI	GCGC	3 cut(s)	225, 270, 2598
BstMAI	GTCTC	7 cut(s)	756, 1259, 1362, 1623, 1624, 2443, 3151
BstMWI	GCNNNNNNNGC	5 cut(s)	204, 249, 392, 476, 2550
BstNI	CCWGG	5 cut(s)	1515, 1539, 2004, 2501, 2870
BstNSI	RCATGY	7 cut(s)	428, 542, 1215, 2044, 2129, 2443, 2792
BstPAI	GACNNNNGTC	1 cut(s)	1388
BstSCI	CCNGG	8 cut(s)	930, 1513, 1537, 1633, 1940, 2002, 2499, 2868
BstSFI	CTRYAG	1 cut(s)	916
BstSLI	GKGCMC	2 cut(s)	1330, 1926
BstUI	CGCG	2 cut(s)	225, 570
BstV1I	GCAGC	6 cut(s)	382, 829, 1222, 2024, 2743, 2939
BstV2I	GAAGAC	6 cut(s)	22, 1942, 2015, 2105, 2259, 3154
BstXI	CCANNNNNNTGG	2 cut(s)	125, 3175
Bsu15I	ATCGAT	1 cut(s)	1054
Bsu36I	CCTNAGG	1 cut(s)	1476
BsuI	GTATCC	4 cut(s)	1035, 2101, 2561, 2735
BsuRI	GGCC	6 cut(s)	507, 628, 903, 1513, 1924, 2026
BsuTUI	ATCGAT	1 cut(s)	1054
BtgI	CCRYGG	2 cut(s)	1508, 2416
BtrI	CACGTC	1 cut(s)	1604
BtsI	GCAGTG	3 cut(s)	358, 393, 2786
BtsIMutI	CAGTG	5 cut(s)	153, 358, 393, 2786, 2910
BveI	ACCTGC	2 cut(s)	17, 2461
CaiI	CAGNNNCTG	1 cut(s)	2875
CciI	TCATGA	2 cut(s)	1779, 1852
CfoI	GCGC	3 cut(s)	225, 270, 2598
Cfr10I	RCCGGY	1 cut(s)	2665
Cfr13I	GGNCC	6 cut(s)	1168, 1786, 1922, 1923, 3071, 3220
ClaI	ATCGAT	1 cut(s)	1054
CseI	GACGC	1 cut(s)	2832
CsiI	ACCWGGT	1 cut(s)	2499
Csp6I	GTAC	4 cut(s)	1045, 1122, 1817, 3257
CspCI	CAANNNNNGTGG	2 cut(s)	3154, 3189
CviQI	GTAC	4 cut(s)	1045, 1122, 1817, 3257
DraIII	CACNNNGTG	1 cut(s)	2503
EaeI	YGGCCR	2 cut(s)	505, 2024
Eam1104I	CTCTTC	6 cut(s)	300, 1419, 1622, 1764, 2747, 2966
EarI	CTCTTC	6 cut(s)	300, 1419, 1622, 1764, 2747, 2966
Eco130I	CCWWGG	6 cut(s)	742, 1508, 1558, 1918, 2103, 2416
Eco24I	GRGCYC	1 cut(s)	1926
Eco31I	GGTCTC	2 cut(s)	1624, 2443
Eco32I	GATATC	2 cut(s)	1891, 2389
Eco47I	GGWCC	4 cut(s)	1168, 1786, 3071, 3220
Eco47III	AGCGCT	1 cut(s)	2597
Eco57I	CTGAAG	1 cut(s)	2900
Eco81I	CCTNAGG	1 cut(s)	1476
Eco88I	CYCGRG	1 cut(s)	2771
EcoO109I	RGGNCCY	2 cut(s)	1922, 3071
EcoRI	GAATTC	2 cut(s)	921, 1669
EcoRII	CCWGG	5 cut(s)	1513, 1537, 2002, 2499, 2868
EcoRV	GATATC	2 cut(s)	1891, 2389
EcoT14I	CCWWGG	6 cut(s)	742, 1508, 1558, 1918, 2103, 2416
EcoT22I	ATGCAT	1 cut(s)	2412
EcoT38I	GRGCYC	1 cut(s)	1926
ErhI	CCWWGG	6 cut(s)	742, 1508, 1558, 1918, 2103, 2416
FalI	AAGNNNNNCTT	5 cut(s)	35, 632, 664, 3144, 3176
FaqI	GGGAC	3 cut(s)	1516, 2684, 2799
FauI	CCCGC	4 cut(s)	252, 1674, 2994, 3263
FbaI	TGATCA	3 cut(s)	1642, 1732, 3003
Fnu4HI	GCNGC	7 cut(s)	396, 818, 821, 1236, 2038, 2757, 2928
FriOI	GRGCYC	1 cut(s)	1926
Fsp4HI	GCNGC	7 cut(s)	396, 818, 821, 1236, 2038, 2757, 2928
FspBI	CTAG	6 cut(s)	348, 849, 1106, 2055, 2132, 3260
GlaI	GCGC	3 cut(s)	224, 269, 2597
GluI	GCNGC	7 cut(s)	396, 818, 821, 1236, 2038, 2757, 2928
GsuI	CTGGAG	1 cut(s)	1680
HaeII	RGCGCY	1 cut(s)	2599
HaeIII	GGCC	6 cut(s)	507, 628, 903, 1513, 1924, 2026
HapII	CCGG	5 cut(s)	932, 1196, 1634, 1941, 2666
HgaI	GACGC	1 cut(s)	2832
HhaI	GCGC	3 cut(s)	225, 270, 2598
Hin1I	GRCGYC	1 cut(s)	2972
Hin6I	GCGC	3 cut(s)	223, 268, 2596
HinP1I	GCGC	3 cut(s)	223, 268, 2596
HincII	GTYRAC	6 cut(s)	430, 937, 960, 1201, 1357, 2899
HindII	GTYRAC	6 cut(s)	430, 937, 960, 1201, 1357, 2899
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	9 cut(s)	280, 464, 565, 602, 1504, 1546, 2185, 3021, 3225
HpaI	GTTAAC	2 cut(s)	960, 2899
HpaII	CCGG	5 cut(s)	932, 1196, 1634, 1941, 2666
HphI	GGTGA	4 cut(s)	745, 1637, 2489, 2842
Hpy166II	GTNNAC	8 cut(s)	430, 937, 960, 1201, 1357, 2899, 2970, 3241
Hpy8I	GTNNAC	8 cut(s)	430, 937, 960, 1201, 1357, 2899, 2970, 3241
Hpy99I	CGWCG	2 cut(s)	302, 1404
HpyCH4IV	ACGT	5 cut(s)	1043, 1399, 1603, 1875, 2972
HpyF10VI	GCNNNNNNNGC	5 cut(s)	204, 249, 392, 476, 2550
HpySE526I	ACGT	5 cut(s)	1043, 1399, 1603, 1875, 2972
Hsp92I	GRCGYC	1 cut(s)	2972
HspAI	GCGC	3 cut(s)	223, 268, 2596
KroI	GCCGGC	1 cut(s)	2665
KroNI	GCCGGC	1 cut(s)	2667
Ksp22I	TGATCA	3 cut(s)	1642, 1732, 3003
KspAI	GTTAAC	2 cut(s)	960, 2899
LguI	GCTCTTC	1 cut(s)	1764
LmnI	GCTCC	6 cut(s)	157, 1661, 1711, 1987, 2476, 2593
Lsp1109I	GCAGC	6 cut(s)	382, 829, 1222, 2024, 2743, 2939
LweI	GCATC	8 cut(s)	279, 1969, 2294, 2397, 2766, 2805, 3031, 3206
MabI	ACCWGGT	1 cut(s)	2499
MaeI	CTAG	6 cut(s)	348, 849, 1106, 2055, 2132, 3260
MaeII	ACGT	5 cut(s)	1043, 1399, 1603, 1875, 2972
MaeIII	GTNAC	6 cut(s)	82, 2377, 2914, 2973, 3056, 3281
MfeI	CAATTG	2 cut(s)	1029, 2017
MhlI	GDGCHC	2 cut(s)	1330, 1926
MlsI	TGGCCA	2 cut(s)	507, 2026
MluNI	TGGCCA	2 cut(s)	507, 2026
MlyI	GAGTC	5 cut(s)	289, 458, 574, 1498, 3030
MmeI	TCCRAC	7 cut(s)	499, 1406, 1466, 1915, 2571, 2973, 3010
Mox20I	TGGCCA	2 cut(s)	507, 2026
Mph1103I	ATGCAT	1 cut(s)	2412
MroNI	GCCGGC	1 cut(s)	2665
MroXI	GAANNNNTTC	3 cut(s)	418, 2139, 2278
MscI	TGGCCA	2 cut(s)	507, 2026
MseI	TTAA	6 cut(s)	93, 405, 959, 1410, 2478, 2898
MslI	CAYNNNNRTG	4 cut(s)	1285, 2415, 3173, 3176
Msp20I	TGGCCA	2 cut(s)	507, 2026
MspI	CCGG	5 cut(s)	932, 1196, 1634, 1941, 2666
MspR9I	CCNGG	8 cut(s)	932, 1515, 1539, 1635, 1942, 2004, 2501, 2870
MunI	CAATTG	2 cut(s)	1029, 2017
Mva1269I	GAATGC	2 cut(s)	185, 2456
MvaI	CCWGG	5 cut(s)	1515, 1539, 2004, 2501, 2870
MvnI	CGCG	2 cut(s)	225, 570
MwoI	GCNNNNNNNGC	5 cut(s)	204, 249, 392, 476, 2550
NaeI	GCCGGC	1 cut(s)	2667
NciI	CCSGG	3 cut(s)	932, 1635, 1942
NcoI	CCATGG	2 cut(s)	1508, 2416
NgoMIV	GCCGGC	1 cut(s)	2665
NheI	GCTAGC	1 cut(s)	347
NmuCI	GTSAC	2 cut(s)	2914, 2973
NsiI	ATGCAT	1 cut(s)	2412
NspI	RCATGY	7 cut(s)	428, 542, 1215, 2044, 2129, 2443, 2792
OliI	CACNNNNGTG	1 cut(s)	1285
PaeI	GCATGC	2 cut(s)	542, 2443
PaeR7I	CTCGAG	1 cut(s)	2771
PagI	TCATGA	2 cut(s)	1779, 1852
PciI	ACATGT	1 cut(s)	2788
PciSI	GCTCTTC	1 cut(s)	1764
PctI	GAATGC	2 cut(s)	185, 2456
PdiI	GCCGGC	1 cut(s)	2667
PdmI	GAANNNNTTC	3 cut(s)	418, 2139, 2278
PfeI	GAWTC	4 cut(s)	602, 1546, 2185, 3225
PflMI	CCANNNNNTGG	2 cut(s)	996, 1514
PkrI	GCNGC	7 cut(s)	397, 819, 822, 1237, 2039, 2758, 2929
PleI	GAGTC	5 cut(s)	288, 458, 573, 1498, 3029
PpsI	GAGTC	5 cut(s)	288, 458, 573, 1498, 3029
PpuMI	RGGWCCY	1 cut(s)	3071
PscI	ACATGT	1 cut(s)	2788
PshAI	GACNNNNGTC	1 cut(s)	1388
PshBI	ATTAAT	1 cut(s)	2478
Psp1406I	AACGTT	1 cut(s)	1875
Psp5II	RGGWCCY	1 cut(s)	3071
Psp6I	CCWGG	5 cut(s)	1513, 1537, 2002, 2499, 2868
PspGI	CCWGG	5 cut(s)	1513, 1537, 2002, 2499, 2868
PspOMI	GGGCCC	1 cut(s)	1922
PspPI	GGNCC	6 cut(s)	1168, 1786, 1922, 1923, 3071, 3220
PspPPI	RGGWCCY	1 cut(s)	3071
PsrI	GAACNNNNNNTAC	2 cut(s)	1412, 1444
PstNI	CAGNNNCTG	1 cut(s)	2875
RsaI	GTAC	4 cut(s)	1046, 1123, 1818, 3258
RsaNI	GTAC	4 cut(s)	1045, 1122, 1817, 3257
RseI	CAYNNNNRTG	4 cut(s)	1285, 2415, 3173, 3176
SapI	GCTCTTC	1 cut(s)	1764
SaqAI	TTAA	6 cut(s)	93, 405, 959, 1410, 2478, 2898
SatI	GCNGC	7 cut(s)	396, 818, 821, 1236, 2038, 2757, 2928
Sau96I	GGNCC	6 cut(s)	1168, 1786, 1922, 1923, 3071, 3220
ScaI	AGTACT	1 cut(s)	1123
SchI	GAGTC	5 cut(s)	289, 458, 574, 1498, 3030
ScrFI	CCNGG	8 cut(s)	932, 1515, 1539, 1635, 1942, 2004, 2501, 2870
SduI	GDGCHC	2 cut(s)	1330, 1926
SexAI	ACCWGGT	1 cut(s)	2499
SfaNI	GCATC	8 cut(s)	279, 1969, 2294, 2397, 2766, 2805, 3031, 3206
SfcI	CTRYAG	1 cut(s)	916
Sfr274I	CTCGAG	1 cut(s)	2771
SinI	GGWCC	4 cut(s)	1168, 1786, 3071, 3220
SlaI	CTCGAG	1 cut(s)	2771
SmiMI	CAYNNNNRTG	4 cut(s)	1285, 2415, 3173, 3176
SmlI	CTYRAG	1 cut(s)	2771
SmoI	CTYRAG	1 cut(s)	2771
SphI	GCATGC	2 cut(s)	542, 2443
SsiI	CCGC	6 cut(s)	245, 570, 821, 1681, 2987, 3270
SspI	AATATT	1 cut(s)	2140
SspMI	CTAG	6 cut(s)	348, 849, 1106, 2055, 2132, 3260
StyD4I	CCNGG	8 cut(s)	930, 1513, 1537, 1633, 1940, 2002, 2499, 2868
StyI	CCWWGG	6 cut(s)	742, 1508, 1558, 1918, 2103, 2416
TaiI	ACGT	5 cut(s)	1046, 1402, 1606, 1878, 2975
TaqI	TCGA	4 cut(s)	827, 1054, 1402, 2772
TatI	WGTACW	3 cut(s)	1121, 1816, 3256
TauI	GCSGC	1 cut(s)	823
TfiI	GAWTC	4 cut(s)	602, 1546, 2185, 3225
Tru1I	TTAA	6 cut(s)	93, 405, 959, 1410, 2478, 2898
Tru9I	TTAA	6 cut(s)	93, 405, 959, 1410, 2478, 2898
TscAI	CASTG	5 cut(s)	153, 358, 393, 2786, 2917
TseFI	GTSAC	2 cut(s)	2914, 2973
TseI	GCWGC	6 cut(s)	395, 817, 1235, 2037, 2756, 2927
Tsp45I	GTSAC	2 cut(s)	2914, 2973
TspGWI	ACGGA	4 cut(s)	875, 1986, 2586, 2952
TspRI	CASTG	5 cut(s)	153, 358, 393, 2786, 2917
Van91I	CCANNNNNTGG	2 cut(s)	996, 1514
VpaK11BI	GGWCC	4 cut(s)	1168, 1786, 3071, 3220
VspI	ATTAAT	1 cut(s)	2478
XapI	RAATTY	6 cut(s)	921, 1444, 1669, 2198, 2532, 2690
XbaI	TCTAGA	2 cut(s)	1105, 2054
XceI	RCATGY	7 cut(s)	428, 542, 1215, 2044, 2129, 2443, 2792
XcmI	CCANNNNNNNNNTGG	3 cut(s)	515, 1655, 3172
XhoI	CTCGAG	1 cut(s)	2771
XmnI	GAANNNNTTC	3 cut(s)	418, 2139, 2278
XspI	CTAG	6 cut(s)	348, 849, 1106, 2055, 2132, 3260
ZraI	GACGTC	1 cut(s)	2973
ZrmI	AGTACT	1 cut(s)	1123
Zsp2I	ATGCAT	1 cut(s)	2412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.